BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2740979	316 (0.880)	18 (0.060)	12/132	NT	5.8%	intergenic (+21/+60)	yhdG_2/USA300HOU_RS14115	putative amino acid permease YhdG/Isoleucine 2‑epimerase
*	?	USA300TCH1516_ALE	= 2741001	321 (1.090)	18 (0.060)	12/132	NT	5.8%	intergenic (+43/+38)	yhdG_2/USA300HOU_RS14115	putative amino acid permease YhdG/Isoleucine 2‑epimerase

Only 100 of 476 total aligned reads displayed.

AGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAG  >  USA300TCH1516_ALE/2740911‑2741091

aGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGAtgt                                                                                            <  1:6241693/91‑1 (MQ=255)

 gACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTg                                                                                           <  1:5661281‑M2/91‑2 (MQ=255)

 gACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTg                                                                                           >  2:3386078‑M2/1‑90 (MQ=255)

 gACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTg                                                                                           <  1:2091342‑M2/91‑2 (MQ=255)

     ttCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaa                                                                                       >  1:5752448‑M2/1‑86 (MQ=255)

     ttCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaa                                                                                       <  1:4136500‑M2/91‑6 (MQ=255)

       cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatg                                                                                     <  2:4204548‑M2/91‑8 (MQ=255)

       cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatg                                                                                     <  2:1074940‑M2/91‑8 (MQ=255)

       cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatg                                                                                     <  1:3094256‑M2/91‑8 (MQ=255)

        tAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatga                                                                                    <  2:3887116‑M2/91‑9 (MQ=255)

          aGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgatt                                                                                  <  1:3489284‑M2/91‑11 (MQ=255)

           gAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattt                                                                                 <  1:2141874‑M2/91‑12 (MQ=255)

           gAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattt                                                                                 >  1:770557‑M2/1‑80 (MQ=255)

           gAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattt                                                                                 <  1:1668649‑M2/91‑12 (MQ=255)

            aaaaaTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgatttt                                                                                >  2:552595‑M2/1‑79 (MQ=255)

             aaaaTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattttt                                                                               <  2:1990608‑M2/91‑14 (MQ=255)

                aTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat                                                                            <  2:2705277/91‑1 (MQ=255)

                 tGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatt                                                                           >  1:1383320/1‑91 (MQ=255)

                 ggACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatt                                                                           <  2:1631109/90‑1 (MQ=255)

                  gACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttattt                                                                          <  1:4056905/91‑1 (MQ=255)

                  aaCGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttattt                                                                          <  2:6364997/90‑1 (MQ=255)

                    cGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttta                                                                        >  1:177275/1‑91 (MQ=255)

                     gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCGTCTGATTAACATCCAGATGTGGAAATGATTTtttattttat                                                                       <  2:4701837/91‑1 (MQ=255)

                     gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTtttattttat                                                                       <  2:4160542/91‑1 (MQ=255)

                     gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTtttattttat                                                                       >  2:2159753/1‑91 (MQ=255)

                       aGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat                                                                     >  2:3716078/1‑91 (MQ=255)

                       aGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat                                                                     >  2:4431856/1‑91 (MQ=255)

                        gCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCAATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATAtt                                                                    >  2:6757993/1‑91 (MQ=255)

                         atGAATAACACCCAACAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa                                                                   <  2:723962/90‑1 (MQ=255)

                          tGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTaa                                                                  <  1:1222571/91‑1 (MQ=255)

                           gAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAg                                                                 <  2:497756/91‑1 (MQ=255)

                           gAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAg                                                                 <  2:784455/91‑1 (MQ=255)

                             aTACCACACAAAAAAAAAAAAAAAAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGAt                                                               <  2:4547437/91‑1 (MQ=255)

                              tACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATa                                                              >  2:5070554/1‑91 (MQ=255)

                              aaccacaCAAAAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATa                                                              <  2:931122/90‑1 (MQ=255)

                                ccacccacCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATTTTAAGATAAt                                                            >  2:2214086/1‑91 (MQ=255)

                                ccacccacCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAAt                                                            >  2:54638/1‑91 (MQ=255)

                                    ccaccaAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCt                                                        <  1:2721644/91‑1 (MQ=255)

                                     caccaAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTa                                                       <  1:3019726/91‑1 (MQ=255)

                                        caAAATAAAAAATAAAAAAAATCATTTCCCAGCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTa                                                    <  1:2625398/91‑1 (MQ=255)

                                         aaaataaaaaataaAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAc                                                   <  1:1570771/91‑1 (MQ=255)

                                         aaaataaaaaataaAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAc                                                   >  1:3760681/1‑91 (MQ=255)

                                          aaataaaaaataaaAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc                                                  >  2:655187/1‑91 (MQ=255)

                                          aaataaaaaataaaAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc                                                  >  2:5890712/1‑91 (MQ=255)

                                          aaataaaaaataaaAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc                                                  >  1:988966/1‑91 (MQ=255)

                                           aataaaaaataaaaAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCa                                                 <  1:391518/91‑1 (MQ=255)

                                           aataaaaaataaaaAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCa                                                 <  1:6549129/91‑1 (MQ=255)

                                            ataaaaaataaaaaAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCaa                                                >  1:369831/1‑91 (MQ=255)

                                            ataaaaaataaaaaAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCaa                                                <  2:2604968/91‑1 (MQ=255)

                                             aaaaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAAc                                               <  2:4931747/90‑1 (MQ=255)

                                              aaaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAAcc                                              <  2:288615/91‑1 (MQ=255)

                                               aaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt                                             >  2:1819882/1‑91 (MQ=255)

                                                 aaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTg                                           >  2:1168346/1‑91 (MQ=255)

                                                  aataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGt                                          >  1:1823126/1‑91 (MQ=255)

                                                   ataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTc                                         >  1:4867968/1‑91 (MQ=255)

                                                     aaaaaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCa                                       <  1:3863443/91‑1 (MQ=255)

                                                        aaaaaTCATTTCCCATCTGATTAACATCCAGATGTggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttt                                    <  1:3560172‑M2/91‑57 (MQ=255)

                                                        aaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGat                                    <  1:2399393/91‑1 (MQ=255)

                                                        aaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGat                                    <  2:4050875/91‑1 (MQ=255)

                                                            aTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGt                                <  1:2281496/91‑1 (MQ=255)

                                                            aTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGt                                <  1:279641/91‑1 (MQ=255)

                                                             tCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTc                               <  1:4512119/91‑1 (MQ=255)

                                                               aTTTCCCATCTGATTAACATCCAGATGTggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttaga                             <  2:483231‑M2/91‑64 (MQ=255)

                                                               aTTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCat                             <  1:5073300/91‑1 (MQ=255)

                                                                tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                            <  2:5136781/91‑1 (MQ=255)

                                                                tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                            >  2:6930214/1‑91 (MQ=255)

                                                                tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                            <  2:3065914/91‑1 (MQ=255)

                                                                tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                            <  1:5137347/91‑1 (MQ=255)

                                                                tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                            <  1:53301/91‑1 (MQ=255)

                                                                 ttCCCATCTGATTAACATCCAGATGTggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttagaat                           <  1:6203911‑M2/91‑66 (MQ=255)

                                                                  tCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATAtt                          >  2:31801/1‑91 (MQ=255)

                                                                   cccATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTg                         >  1:1029226/1‑91 (MQ=255)

                                                                   cccATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTg                         >  1:90720/1‑91 (MQ=255)

                                                                    ccATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGa                        >  1:3279099/1‑91 (MQ=255)

                                                                    ccATCTGATTAACATCAAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGa                        <  2:6313899/91‑1 (MQ=255)

                                                                     cATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGAt                       <  2:2805212/91‑1 (MQ=255)

                                                                        cTGATTAACATCCAGATGTggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttagaatgtctaag                    <  2:6109560‑M2/91‑73 (MQ=255)

                                                                        cTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTa                    >  2:5629459/1‑91 (MQ=255)

                                                                         tGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTaa                   >  1:4282205/1‑91 (MQ=255)

                                                                         tGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTaa                   <  1:6344238/91‑1 (MQ=255)

                                                                            ttAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGtt                <  1:1998896/91‑1 (MQ=255)

                                                                             tAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTa               <  1:5951158/91‑1 (MQ=255)

                                                                              aaCATCCTGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTAc              <  1:5570330/91‑1 (MQ=255)

                                                                               aCATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTAcc             <  2:2477947/91‑1 (MQ=255)

                                                                               aCATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTAcc             <  1:1073403/91‑1 (MQ=255)

                                                                               aCATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTAcc             <  2:3779712/91‑1 (MQ=255)

                                                                                cATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCt            <  2:1746334/91‑1 (MQ=255)

                                                                                 aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg           <  2:1380550/91‑1 (MQ=255)

                                                                                 aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg           <  2:5351510/91‑1 (MQ=255)

                                                                                 aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg           <  2:4387011/91‑1 (MQ=255)

                                                                                 aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg           <  1:544230/91‑1 (MQ=255)

                                                                                   ccAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCt         <  1:6905054/91‑1 (MQ=255)

                                                                                   ccAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCt         <  1:6652528/91‑1 (MQ=255)

                                                                                    cAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTAc              <  1:1968785/85‑1 (MQ=255)

                                                                                     aGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTc       <  2:6895350/91‑1 (MQ=255)

                                                                                       aTGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCa     >  2:146983/1‑91 (MQ=255)

                                                                                        tgtgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCaa    <  1:4965124/91‑1 (MQ=255)

                                                                                        tgtgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCaa    >  2:2339869/1‑91 (MQ=255)

                                                                                          tgGAAATGATTTTTTTTTTTATATTAAGATAATCGCTATTACCAACCTTGCCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAg  >  2:351519/1‑91 (MQ=255)

                                                                                          tgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAg  >  1:4771620/1‑91 (MQ=255)

AGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAG  >  USA300TCH1516_ALE/2740911‑2741091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.