| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2797807 = | 326 (0.910) | 16 (0.050) | 12/142 | NT | 5.1% | intergenic (+95/+172) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | 2797838 = | 304 (0.960) | intergenic (+126/+141) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
Only 100 of 545 total aligned reads displayed.
TATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTG > USA300TCH1516_ALE/2797717‑2797897 | tgctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAc < 2:1731822‑M1/2‑1 (MQ=255) tatTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACC < 1:1173632‑M1/91‑1 (MQ=255) tatTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACC < 2:630657‑M1/91‑1 (MQ=255) gctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAcc > 1:3568366‑M1/89‑91 (MQ=255) gctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAcc > 2:4597651‑M1/89‑91 (MQ=255) gctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAcc > 2:5911228‑M1/89‑91 (MQ=255) ctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaatataaaataatatatttatataaaacgAccc < 2:6924582‑M1/4‑1 (MQ=255) ctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAccc > 2:2096813‑M1/88‑91 (MQ=255) ctcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgAccc < 1:2859685‑M1/4‑1 (MQ=255) atTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCC < 1:1063597‑M1/91‑1 (MQ=255) atTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCCTATTCAAGTAAACCC > 2:5386795‑M1/1‑91 (MQ=255) tcatatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCg < 1:5464974‑M1/5‑1 (MQ=255) catatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGa < 2:6774667‑M1/6‑1 (MQ=255) atatttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaatgACCCGAg < 2:5269119‑M1/7‑1 (MQ=255) aaaCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAG > 2:5984685‑M1/1‑91 (MQ=255) aaaCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAG > 1:3053985‑M1/1‑91 (MQ=255) aaaCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAG > 2:4983638‑M1/1‑91 (MQ=255) aCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGC > 2:6150902‑M1/1‑91 (MQ=255) aCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGC < 2:4889251‑M1/91‑1 (MQ=255) ccGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAt > 1:4195806/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 1:1564957/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 2:3774520/1‑91 (MQ=255) gTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc > 2:658936/1‑91 (MQ=255) aaaaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑Ag > 1:328825/1‑91 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGtt > 2:3616274/1‑91 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGtt > 2:3378811/1‑91 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc < 1:5605163/91‑1 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc > 1:1799524/1‑91 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCgttcgaactga < 1:4603848‑M1/91‑12 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGa > 1:5240206/1‑91 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAACTAAACCCGAGGCATTC‑AGTTCGa > 1:4975813/1‑91 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGaa < 1:3635599/91‑1 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGaa > 1:4276560/1‑91 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcct < 1:2649443‑M2/91‑5 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcct > 1:2074230‑M2/1‑87 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctc > 2:1057162‑M2/1‑86 (MQ=255) ataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcg < 1:697883‑M2/91‑7 (MQ=255) ataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcg > 1:4796854‑M2/1‑85 (MQ=255) taAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgg > 2:220947‑M2/1‑84 (MQ=255) taAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgg > 2:5160336‑M2/1‑84 (MQ=255) aaaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcggg > 1:5668039‑M2/1‑83 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt > 1:5189151‑M2/1‑82 (MQ=255) ttgaaacggatatgatgaggaacaattgaacataaaataatatatttatataaaacgACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGt > 2:4697253‑M1/58‑91 (MQ=255) aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGt > 2:1857360/1‑91 (MQ=255) tgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtt > 2:4771955‑M1/57‑91 (MQ=255) aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtt > 1:4119252/1‑91 (MQ=255) ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGttt > 1:6330269/1‑91 (MQ=255) ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGttt > 1:93608/1‑91 (MQ=255) aGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTta < 1:3951414/91‑1 (MQ=255) gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtat > 1:6492968/1‑91 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatat > 2:2625899/1‑91 (MQ=255) cGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatata > 1:2377111/1‑91 (MQ=255) ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATaa > 2:5589571/1‑91 (MQ=255) gACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATaaa < 2:248257/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata > 2:5780388/1‑91 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 2:5342318/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 1:3159336/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata > 1:6620537/1‑91 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta > 1:3469170/1‑91 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTATACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 1:5792140/91‑1 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 2:805294/91‑1 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 2:3987534/91‑1 (MQ=255) atTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAtttt < 2:4459444/91‑1 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa > 1:5036092/1‑91 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa < 1:6150902/91‑1 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa > 1:2322889/1‑91 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGTCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAACTATATTATTTTAt > 2:3332022/1‑91 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 1:1742436/1‑91 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 1:1430274/1‑91 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt > 2:4206669/1‑91 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCattcagttcgaacgcctcgggtttaattgaataagaaatcagacttatgaaca > 1:2026870‑M1/1‑38 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa < 2:2773201/91‑1 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa > 2:3462881/1‑91 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa > 2:2593584/1‑91 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa < 2:2928853/91‑1 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 2:375581/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 1:2957456/1‑91 (MQ=255) aTAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt < 1:5993240/91‑1 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg < 2:1991681/91‑1 (MQ=255) cTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt > 1:820306/1‑91 (MQ=255) tGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtc < 1:3365448/91‑1 (MQ=255) ttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca < 1:3774520/91‑1 (MQ=255) ttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca > 1:4929069/1‑91 (MQ=255) tatttatataaaacgACCCGAGGCGTTCGAACT‑GAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca < 1:6663386‑M1/76‑1 (MQ=255) ttATTCAATTAAACCCGAGGCATTC‑CGTTCGAACGCCTCGGGTCGTTTTCTATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat < 2:6482033/91‑1 (MQ=255) aTTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc > 2:3199826/1‑91 (MQ=255) aTTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTAGTTTTATATAAATATATTATTTTATGTTCAAACGTTCCTCATCATATcc > 1:6924582/1‑91 (MQ=255) ttCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCg < 2:1377985/91‑1 (MQ=255) ttCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTACTTTATGTTCAAATGTTCCTCATCATATCCg > 1:5400820/1‑91 (MQ=255) tCAATTAAACCCGAGGCattcagttcgaacgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaac > 1:2452196‑M1/1‑17 (MQ=255) tCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt > 2:1569475/1‑91 (MQ=255) cAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGtt < 2:1018268/91‑1 (MQ=255) aaTTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGttt > 2:1222236/1‑91 (MQ=255) aaTTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGttt < 1:4499811/91‑1 (MQ=255) ttAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAGATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCa < 1:4374409/91‑1 (MQ=255) tAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCaa < 1:1279725/91‑1 (MQ=255) aaaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt > 1:3751175/1‑91 (MQ=255) aaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt < 1:2554643/91‑1 (MQ=255) aaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt < 2:6342029/91‑1 (MQ=255) aCCCGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtt < 2:875083‑M1/91‑83 (MQ=255) | TATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTG > USA300TCH1516_ALE/2797717‑2797897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |