BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2797807 =	326 (0.910)	16 (0.050)	12/142	NT	5.1%	intergenic (+95/+172)	USA300HOU_RS14370/USA300HOU_RS14375	N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase
*	?	USA300TCH1516_ALE	2797838 =	304 (0.960)	16 (0.050)	12/142	NT	5.1%	intergenic (+126/+141)	USA300HOU_RS14370/USA300HOU_RS14375	N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase

Only 100 of 468 total aligned reads displayed.

ACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAAA  >  USA300TCH1516_ALE/2797748‑2797928

  aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGt                                                                                          <  2:6378137/91‑1 (MQ=255)

   aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGtt                                                                                         >  1:6025403/1‑91 (MQ=255)

    ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCACGGGTCGttt                                                                                        >  2:5545421/1‑91 (MQ=255)

       gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat                                                                                     >  2:1231773/1‑91 (MQ=255)

       gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat                                                                                     >  2:6312859/1‑91 (MQ=255)

       gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat                                                                                     >  1:6492968/1‑91 (MQ=255)

       gTTCGGACTTAAACATATGTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat                                                                                     >  1:2077934/1‑91 (MQ=255)

        ttCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtata                                                                                    <  2:4682891/91‑1 (MQ=255)

         tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtatat                                                                                   <  1:4968418/91‑1 (MQ=255)

         tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCATCGGGTCGTTTtatat                                                                                   >  1:236575/1‑91 (MQ=255)

           ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATaa                                                                                 >  2:1085489/1‑91 (MQ=255)

           ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATaa                                                                                 >  1:2435632/1‑91 (MQ=255)

           ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATaa                                                                                 >  1:5629727/1‑91 (MQ=255)

               ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatat                                                                             <  1:2503584/91‑1 (MQ=255)

                tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatata                                                                            <  1:3159336/91‑1 (MQ=255)

                tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatata                                                                            >  1:6618877/1‑91 (MQ=255)

                 aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatatat                                                                           <  2:2437192/91‑1 (MQ=255)

                   aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta                                                                         <  1:4881530/91‑1 (MQ=255)

                    cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat                                                                        >  1:1272991/1‑91 (MQ=255)

                    cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat                                                                        <  2:3987534/91‑1 (MQ=255)

                    cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat                                                                        <  1:1781284/91‑1 (MQ=255)

                        tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa                                                                    >  2:3797035/1‑91 (MQ=255)

                        tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa                                                                    >  1:3344968/1‑91 (MQ=255)

                        tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa                                                                    >  2:6561442/1‑91 (MQ=255)

                         ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTAt                                                                   <  2:4977040/91‑1 (MQ=255)

                          tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg                                                                  <  1:3600123/91‑1 (MQ=255)

                           cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt                                                                 >  1:1498743/1‑91 (MQ=255)

                           cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt                                                                 >  1:1742436/1‑91 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:3119279/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  1:3759360/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  1:5164531/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTAGTCACTTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:6898390/91‑1 (MQ=255)

                               tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa                                                             >  1:2935558/1‑91 (MQ=255)

                                cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa                                                            <  2:5885055/91‑1 (MQ=255)

                                cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa                                                            >  2:4788141/1‑91 (MQ=255)

                                 aTAAGTCTGATTTCTTATTGAATTAAACCCAAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt                                                           <  1:5377654/91‑1 (MQ=255)

                                 aTAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt                                                           <  1:6634046/91‑1 (MQ=255)

                                  tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg                                                          <  2:5374251/91‑1 (MQ=255)

                                  tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg                                                          >  1:5233799/1‑91 (MQ=255)

                                   aaGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGt                                                         <  2:3697241/91‑1 (MQ=255)

                                    aGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGGCGTTTTATATAAATATATTATTTTATGTTCAAATGtt                                                        <  1:2216487/91‑1 (MQ=255)

                                     gTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGTCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTc                                                       <  2:6763625/91‑1 (MQ=255)

                                       cTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTccc                                                     >  2:1025267/1‑90 (MQ=255)

                                       cTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt                                                     <  2:25499/91‑1 (MQ=255)

                                       cTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt                                                     >  1:4218476/1‑91 (MQ=255)

                                         gATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtca                                                   >  1:1114528/1‑91 (MQ=255)

                                          aTTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat                                                  >  2:2823873/1‑91 (MQ=255)

                                           tttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatc                                                 <  1:5905701/91‑1 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca                                                >  1:6330256/1‑91 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca                                                >  1:4334700/1‑91 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca                                                <  1:3774727/91‑1 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTCTATGTTCAAATGTTCCtcatca                                                <  2:5318485/91‑1 (MQ=255)

                                               ttATTCAATTAAACCCGAGGCATTCTGTTCGAACGCCTCGGGTCGTTTTTTATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat                                             <  2:6481044/91‑1 (MQ=255)

                                               ttATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat                                             >  2:2661778/1‑91 (MQ=255)

                                                tATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATc                                            >  1:5666371/1‑91 (MQ=255)

                                                tATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATc                                            <  1:2593907/91‑1 (MQ=255)

                                                 aTTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc                                           <  1:4003424/91‑1 (MQ=255)

                                                 aTTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc                                           <  1:4467229/91‑1 (MQ=255)

                                                 aTTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc                                           >  2:3200929/1‑91 (MQ=255)

                                                  ttCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCg                                          <  2:1727890/91‑1 (MQ=255)

                                                   tCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt                                         <  2:3341392/91‑1 (MQ=255)

                                                   tCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt                                         >  2:4125472/1‑91 (MQ=255)

                                                    cAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGtt                                        <  2:3468439/91‑1 (MQ=255)

                                                    cAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGtt                                        <  2:291738/91‑1 (MQ=255)

                                                        tAAACCCGAGGCATGCAGTTCGCACGCCTCGGGTCGTTTCATATAAATATATTATTTTATGTTCAACTGTTCCTCATCATATCCGTTTCaa                                    >  2:861105/1‑91 (MQ=255)

                                                          aaCCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt                                  <  1:4539855/91‑1 (MQ=255)

                                                           ACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATGAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTg                                 <  2:4722457‑M1/91‑1 (MQ=255)

                                                            CCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc                                <  1:202554‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  1:3263217‑M1/91‑1 (MQ=255)

                                                               GAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAt                             <  2:4221379‑M1/91‑1 (MQ=255)

                                                                  GCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc                          >  1:584221‑M1/1‑91 (MQ=255)

                                                                  GCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc                          >  1:6778383‑M1/1‑91 (MQ=255)

                                                                    aTTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcac                        >  2:5973096/1‑91 (MQ=255)

                                                                     ttcgaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca                       >  2:4456600‑M2/22‑91 (MQ=255)

                                                                     ttCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca                       >  2:1614981/1‑91 (MQ=255)

                                                                     ttCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca                       <  2:6076657/91‑1 (MQ=255)

                                                                      tcgaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt                                   >  1:91669‑M2/21‑78 (MQ=255)

                                                                      tCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac                      <  1:5742751/91‑1 (MQ=255)

                                                                      tCAGTTCGAACGCCTCGCGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac                      <  2:1782969/91‑1 (MQ=255)

                                                                       cgaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacaca                     >  1:2982274‑M2/20‑91 (MQ=255)

                                                                       cAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacaca                     >  2:718286/1‑91 (MQ=255)

                                                                       cAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacaca                     <  1:3214284/91‑1 (MQ=255)

                                                                         gTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAtt                   >  1:3410746/1‑91 (MQ=255)

                                                                          ttCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAttt                  <  1:6922869/91‑1 (MQ=255)

                                                                          ttCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAttt                  <  2:5740174/91‑1 (MQ=255)

                                                                            cGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTta                <  2:4887340/91‑1 (MQ=255)

                                                                             gAACGCCTCGGGTCGTTTTATATAAATATGTTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtat               <  1:6189279/91‑1 (MQ=255)

                                                                              aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata              >  1:4767733/1‑91 (MQ=255)

                                                                              aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata              >  2:1500170/1‑91 (MQ=255)

                                                                              aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata              >  2:1913865/1‑91 (MQ=255)

                                                                                  cctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAata          <  1:3658663‑M2/83‑1 (MQ=255)

                                                                                   ctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAatat         <  2:5226834‑M2/84‑1 (MQ=255)

                                                                                   ctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAatat         >  1:795250‑M2/8‑91 (MQ=255)

                                                                                     cgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGa       <  1:5464974‑M2/86‑1 (MQ=255)

                                                                                     cgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGa       >  2:1978652‑M2/6‑91 (MQ=255)

                                                                                      gggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg      <  1:2859685‑M2/87‑1 (MQ=255)

                                                                                      gggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg      >  2:2096813‑M2/5‑91 (MQ=255)

                                                                                       ggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGc     >  2:2218845‑M2/4‑91 (MQ=255)

                                                                                       ggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGc     >  2:4597651‑M2/4‑91 (MQ=255)

                                                                                         tCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCaa   <  1:3505786‑M2/90‑1 (MQ=255)

ACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAAA  >  USA300TCH1516_ALE/2797748‑2797928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.