| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2797815 | 329 (0.920) | 14 (0.040) | 9/142 | NT | 4.5% | intergenic (+103/+164) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | = 2797828 | 304 (0.960) | intergenic (+116/+151) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 566 total aligned reads displayed.
ACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCA > USA300TCH1516_ALE/2797725‑2797905 | atttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGc > 2:122685‑M1/83‑91 (MQ=255) cccGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCa > 2:3266633/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 1:1564957/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 2:6991006/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 2:3774520/1‑91 (MQ=255) gTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc > 2:658936/1‑91 (MQ=255) gTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc > 1:2445742/1‑91 (MQ=255) aaaaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑Ag > 2:3951414/1‑91 (MQ=255) aaaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGt > 1:2983386/1‑91 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGtt > 2:2808023/1‑91 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGtt > 2:502589/1‑91 (MQ=255) aaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGtt < 2:4906026/91‑1 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc < 2:3418129/91‑1 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc < 1:5605163/91‑1 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc > 1:1799524/1‑91 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTc < 2:1405509/91‑1 (MQ=255) tttATACGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCTTACGTCTGATTTCTTATTCGGTTAAACCCGATGCgttcgaactt < 2:1675053‑M1/91‑11 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAGCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGa < 1:2769736/91‑1 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGa > 1:4977040/1‑91 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGa < 1:1422144/91‑1 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGa < 1:4635797/91‑1 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCgttcgaactgaa < 1:6025976‑M1/91‑13 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGaa > 1:3815828/1‑91 (MQ=255) ataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAAc > 2:2624691/1‑91 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACg < 2:5501833‑M2/91‑2 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACg < 2:6231802‑M2/91‑2 (MQ=255) aaGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgc < 2:5169946‑M2/91‑3 (MQ=255) aGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcc < 2:424419‑M2/91‑4 (MQ=255) aGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcc < 2:2563195‑M2/91‑4 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctc > 1:361786‑M2/1‑86 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATCC‑AGTTCGAACgcctc < 2:6087028‑M2/91‑6 (MQ=255) ataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcg > 1:4796854‑M2/1‑85 (MQ=255) aaaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcggg > 1:6599070‑M2/1‑83 (MQ=255) aaaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcggg > 2:5001646‑M2/1‑83 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt < 1:859575‑M2/91‑10 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt < 1:6930513‑M2/91‑10 (MQ=255) tgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtt > 2:4771955‑M1/57‑91 (MQ=255) aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtt > 1:4119252/1‑91 (MQ=255) aGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTta < 1:3951414/91‑1 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatat > 1:3446859/1‑91 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCATCGGGTCGTTTtatat > 1:236575/1‑91 (MQ=255) cGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatata < 2:74855/91‑1 (MQ=255) ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATaa > 2:1085489/1‑91 (MQ=255) aCTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAat > 2:1926619/1‑91 (MQ=255) ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 1:2503584/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 1:3159336/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata > 1:6620709/1‑91 (MQ=255) aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCGTTCGAACT‑GAATgcctcgggtttaattgaataagaaatc > 1:1196665‑M2/1‑64 (MQ=255) atTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAtttt < 2:4459444/91‑1 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa > 1:3344968/1‑91 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa < 2:5407763/91‑1 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt < 1:815210/91‑1 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 1:1742436/1‑91 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 2:5765387/1‑91 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 1:5222335/1‑91 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 1:3759360/91‑1 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa < 2:2928853/91‑1 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa > 1:2935558/1‑91 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa > 2:2022192/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 2:375581/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 1:1993141/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 2:2450828/1‑91 (MQ=255) aTAAGTCTGATTTCTTATTGAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt < 1:5373452/91‑1 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg < 1:5729769/91‑1 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg < 1:4272975/91‑1 (MQ=255) gTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGTCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTc < 2:6763625/91‑1 (MQ=255) gATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtca > 1:1114528/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGTGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 2:5334661/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 2:2178680/1‑91 (MQ=255) tttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatc < 1:5905701/91‑1 (MQ=255) ttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca > 1:4929069/1‑91 (MQ=255) ttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca > 1:6484097/1‑91 (MQ=255) tCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat < 1:6794462/91‑1 (MQ=255) tCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat > 2:1035660/1‑91 (MQ=255) cTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata > 2:5927109/1‑91 (MQ=255) ttATTCAATTAAACCCGAGGCATTC‑CGTTCGAACGCCTCGGGTCGTTTTCTATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat < 2:6482033/91‑1 (MQ=255) aTTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc > 2:3199826/1‑91 (MQ=255) tCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt > 2:4125472/1‑91 (MQ=255) aaTTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGttt < 1:4499811/91‑1 (MQ=255) ttAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAGATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCa < 1:4374409/91‑1 (MQ=255) aaaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt < 1:955220/91‑1 (MQ=255) aaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt < 2:6342029/91‑1 (MQ=255) aCCCGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtt < 2:875083‑M1/91‑83 (MQ=255) aCCCGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtt > 1:5569168‑M1/1‑9 (MQ=255) ACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTg < 1:3547740‑M1/91‑1 (MQ=255) ACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTg < 1:2060985‑M1/91‑1 (MQ=255) cccGAGGCgttcgaactgaatgcctcgggtttaattgaataagcaatcagacttatgaaccgaactctgtttaagtccgaactacttgttt > 2:3538933‑M1/1‑8 (MQ=255) cccGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgttt > 1:5668039‑M1/1‑8 (MQ=255) cGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttat < 1:5182993‑M1/91‑86 (MQ=255) CGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa < 1:2112774‑M1/91‑1 (MQ=255) CGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa < 2:4704219‑M1/91‑1 (MQ=255) aGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatac < 1:2649443‑M1/91‑88 (MQ=255) GGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtct > 2:4672419‑M1/1‑91 (MQ=255) gCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatactt < 2:3365448‑M1/91‑90 (MQ=255) GCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc < 2:1771684‑M1/91‑1 (MQ=255) GCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc > 1:2286187‑M1/1‑91 (MQ=255) cgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatactta > 1:4170817‑M1/1‑1 (MQ=255) cgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatactta < 1:6298848‑M1/91‑91 (MQ=255) cATTC‑AGTTCGAACgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatactta < 1:542542‑M2/91‑78 (MQ=255) CATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCa > 1:3238785‑M1/1‑91 (MQ=255) | ACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCA > USA300TCH1516_ALE/2797725‑2797905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |