| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2797815 | 329 (0.920) | 14 (0.040) | 9/142 | NT | 4.5% | intergenic (+103/+164) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | = 2797828 | 304 (0.960) | intergenic (+116/+151) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 488 total aligned reads displayed.
ATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAA > USA300TCH1516_ALE/2797738‑2797917 | ataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAAc > 2:2624691/1‑91 (MQ=255) tgagatggcaattgaaacggatatgatgaagaacatttgaacataaaataatatatttatataaaacgACCCGAGGCATTC‑AGTTCGAACg > 2:1246215‑M1/69‑91 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACg < 1:4165230‑M2/91‑2 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACg < 2:5501833‑M2/91‑2 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACg < 1:2357434‑M2/91‑2 (MQ=255) aaGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgc < 2:5169946‑M2/91‑3 (MQ=255) aGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcc < 1:1991681‑M2/91‑4 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctc > 2:1058056‑M2/1‑86 (MQ=255) ataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcg > 1:29345‑M2/1‑85 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGCTTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt < 1:5453775‑M2/91‑10 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt < 2:872994‑M2/91‑10 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt > 1:5569168‑M2/1‑82 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACgcctcgggt < 1:6930513‑M2/91‑10 (MQ=255) aCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTc < 1:1704122/91‑1 (MQ=255) ttgaaacggatatgatgaggaacaattgaacataaaataatatatttatataaaacgACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGt > 2:4697253‑M1/58‑91 (MQ=255) aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtt < 2:6060882/91‑1 (MQ=255) ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGttt > 2:6737835/1‑91 (MQ=255) gAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGtttt < 1:3996123/91‑1 (MQ=255) aGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTta < 1:5749663/91‑1 (MQ=255) gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtat > 1:6492968/1‑91 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatat > 2:4532924/1‑91 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatat > 1:3879657/1‑91 (MQ=255) cGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTtatata < 2:74855/91‑1 (MQ=255) ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATaa > 1:2435632/1‑91 (MQ=255) aCTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAat > 2:1926619/1‑91 (MQ=255) aCTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAat > 2:6922869/1‑91 (MQ=255) cTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAata < 1:3669987/91‑1 (MQ=255) cTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAata > 1:2277378/1‑91 (MQ=255) ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 1:2503584/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 2:5342185/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 2:6323207/91‑1 (MQ=255) aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCGTTCGAACT‑GAATgcctcgggtttaattgaataagaaatc > 1:1196665‑M2/1‑64 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta < 1:4881530/91‑1 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta > 1:3469170/1‑91 (MQ=255) cATATTTCTGTTCATAAGTCTGATTGCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 2:3385846/91‑1 (MQ=255) tataTCTGTGCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCTAACGCCTCGGGTCGTTTTATATAAATATATTAttt < 2:4192668/91‑1 (MQ=255) tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa < 2:5407763/91‑1 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGTCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAACTATATTATTTTAt > 2:3332022/1‑91 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTAt < 2:4977040/91‑1 (MQ=255) tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg > 1:4456780/1‑91 (MQ=255) tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg < 1:3600123/91‑1 (MQ=255) cTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGt > 1:1430274/1‑91 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 1:5164531/91‑1 (MQ=255) gTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTc < 2:6532857/91‑1 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa > 2:2022192/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 2:375581/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa < 2:2762927/91‑1 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa > 1:3147515/1‑91 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa < 2:5885055/91‑1 (MQ=255) aTAAGTCTGATTTCTTATTGAATTAAACCCAAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt < 1:5377654/91‑1 (MQ=255) aTAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt > 2:291525/1‑91 (MQ=255) aTAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt < 1:5993240/91‑1 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg > 1:5233752/1‑91 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg < 1:4272975/91‑1 (MQ=255) cTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt > 1:820306/1‑91 (MQ=255) cTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt < 2:25499/91‑1 (MQ=255) gATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtca > 1:1114528/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 1:6912593/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 2:2178680/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 2:6189279/1‑91 (MQ=255) ttCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca > 1:6330256/1‑91 (MQ=255) tatttatataaaacgACCCGAGGCGTTCGAACT‑GAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca < 1:6663386‑M1/76‑1 (MQ=255) tCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat < 2:1506209/91‑1 (MQ=255) tCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat < 2:3094600/91‑1 (MQ=255) cTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata > 2:2436062/1‑91 (MQ=255) ttATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTCTATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat < 2:6449293/91‑1 (MQ=255) tATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATc < 1:3186816/91‑1 (MQ=255) tATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATc < 1:2593907/91‑1 (MQ=255) aTTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc > 2:1034487/1‑91 (MQ=255) aTTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATcc > 2:3200929/1‑91 (MQ=255) aaTTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGttt > 1:2967659/1‑91 (MQ=255) ttAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCa < 2:4764351/91‑1 (MQ=255) tAAACCCGAGGCATTC‑AGTTCGAACgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactcctt < 1:947184‑M2/91‑67 (MQ=255) aaaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt > 1:4977700/1‑91 (MQ=255) aaCCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt < 1:4539855/91‑1 (MQ=255) CCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc > 2:3854871‑M1/1‑91 (MQ=255) CCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc < 1:6614231‑M1/91‑1 (MQ=255) CCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc > 2:5006643‑M1/1‑91 (MQ=255) CCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc > 2:1836483‑M1/1‑91 (MQ=255) CCGAGGCATTC‑AGTTCGACCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGcc > 1:2081347‑M1/1‑91 (MQ=255) CGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa < 1:5648280‑M1/91‑1 (MQ=255) GAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAt < 1:5726526‑M1/91‑1 (MQ=255) AGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAGATATATTATTTTATGTTCAAATGTTCCTCTTCATATCCGTTTCAATTGCCAtc > 2:433102‑M1/1‑91 (MQ=255) AGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtc > 1:3316890‑M1/1‑91 (MQ=255) GCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc > 1:584221‑M1/1‑91 (MQ=255) CATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCa > 1:2039051‑M1/1‑91 (MQ=255) CATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCa > 1:3238785‑M1/1‑91 (MQ=255) ttC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcaca < 2:4018765/91‑1 (MQ=255) tC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac < 1:3765463/91‑1 (MQ=255) tC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac < 1:6189367/91‑1 (MQ=255) c‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacaca < 1:1775268/91‑1 (MQ=255) aagTTCGAACgcatcgggtttaaccgaataagaaatcagacgtaagaacagaaatatgtttaagtccgaactccttgtttatacgtataaa < 2:1675053‑M2/90‑82 (MQ=255) aGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAt > 2:1739851/1‑91 (MQ=255) aGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAt > 2:3570246/1‑91 (MQ=255) gTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAtt < 1:6045496/91‑1 (MQ=255) gTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAtt > 1:3410746/1‑91 (MQ=255) ttCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAttt < 2:5740174/91‑1 (MQ=255) cGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTta < 2:4887340/91‑1 (MQ=255) aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata > 1:2702486/1‑91 (MQ=255) aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata > 1:4767733/1‑91 (MQ=255) | ATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTC‑AGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAA > USA300TCH1516_ALE/2797738‑2797917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |