BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	435 (1.220)	6 (0.020)	6/150	NT	1.5%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	6 (0.020)	6/150	NT	1.5%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 548 total aligned reads displayed.

GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2862984‑2863164

 tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtc                                                                                           <  2:2189943/91‑1 (MQ=255)

 tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtc                                                                                           >  2:2511275/1‑91 (MQ=255)

 tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtc                                                                                           >  2:5191080/1‑91 (MQ=255)

  ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtct                                                                                          >  1:6790749/1‑91 (MQ=255)

     aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                       >  1:5727679/1‑91 (MQ=255)

     aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                       <  1:513730/91‑1 (MQ=255)

     aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                       >  1:4286559/1‑91 (MQ=255)

      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt                                                                                      <  2:3489656/91‑1 (MQ=255)

      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt                                                                                      >  1:205543/1‑91 (MQ=255)

       cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                     >  1:4021193/1‑91 (MQ=255)

       cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGCCTTTTCTCtgtg                                                                                     >  2:4496024/1‑91 (MQ=255)

         aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                   <  1:2509333/91‑1 (MQ=255)

          aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta                                                                                  >  1:2004098/1‑91 (MQ=255)

          aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta                                                                                  <  2:4769936/91‑1 (MQ=255)

               atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                             >  1:6070816/1‑91 (MQ=255)

                tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                            >  1:483549/1‑91 (MQ=255)

                 aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATc                                                                           >  1:2684604/1‑91 (MQ=255)

                 aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATATATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATc                                                                           >  2:4142159/1‑91 (MQ=255)

                  aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa                                                                          <  1:6519560/91‑1 (MQ=255)

                   aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg                                                                         >  2:5766354/1‑91 (MQ=255)

                   aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg                                                                         >  2:3598468/1‑91 (MQ=255)

                   aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg                                                                         <  2:409268/91‑1 (MQ=255)

                     ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTCCGGCTTTTCTCTGTGCTATAAAATCAGTa                                                                       >  1:6177431/1‑91 (MQ=255)

                       gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg                                                                     >  2:5004706/1‑91 (MQ=255)

                        tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg                                                                    >  1:2562645/1‑91 (MQ=255)

                          cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                  >  1:394466/1‑91 (MQ=255)

                          cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                  >  2:6241784/1‑91 (MQ=255)

                          cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                  >  1:4813979/1‑91 (MQ=255)

                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa                                                                >  2:4733315/1‑91 (MQ=255)

                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa                                                                >  2:2401822/1‑91 (MQ=255)

                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa                                                                >  2:5232321/1‑91 (MQ=255)

                             cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg                                                               <  2:598669/91‑1 (MQ=255)

                             cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTCTCTCTGTGCTATAAAATCAGAATGGCGAAg                                                               >  1:5402145/1‑91 (MQ=255)

                               tAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGca                                                             >  1:3600809/1‑91 (MQ=255)

                                 aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                           >  1:3728570/1‑91 (MQ=255)

                                    tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATGAGTATGACGAAGCACAGTg                                                        <  2:6506562/91‑1 (MQ=255)

                                     aaCAATCTAAAGATTTATAAAAAAGCCGTGGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGa                                                       <  2:6836025/90‑1 (MQ=255)

                                      aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCCCAGTGAt                                                      >  1:1638220/1‑91 (MQ=255)

                                      aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt                                                      >  1:1126229/1‑91 (MQ=255)

                                      aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt                                                      >  2:6576922/1‑91 (MQ=255)

                                       cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACGGTGATc                                                     >  2:6410683/1‑91 (MQ=255)

                                       cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                     <  2:1844298/91‑1 (MQ=255)

                                          tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt                                                  <  1:5224805/91‑1 (MQ=255)

                                           cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                 >  1:5182462/1‑91 (MQ=255)

                                            tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGa                                                >  2:3135097/1‑91 (MQ=255)

                                             aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                               <  1:4948205/91‑1 (MQ=255)

                                              aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                              >  2:2628116/1‑91 (MQ=255)

                                              aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                              <  1:1288930/91‑1 (MQ=255)

                                              aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                              <  2:5666516/91‑1 (MQ=255)

                                               aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAtt                                             >  1:1691836/1‑91 (MQ=255)

                                               aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAAATACCGCTTTTCTCTGTGCTATAAAATCCGTATGGCGAAGCACAGTGATCATTGAAtt                                             >  2:7002888/1‑91 (MQ=255)

                                                gATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTc                                            <  2:6070816/91‑1 (MQ=255)

                                                gATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTc                                            <  2:3075639/91‑1 (MQ=255)

                                                 aTTTATGAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTTTGGCGAAGCACAGTGATCATTGAATTCt                                           <  2:6688519/91‑1 (MQ=255)

                                                 aTTTATAAAAAAGCCGTTGGTCTCTTCGAAGCTACGGCTGTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt                                           <  1:3261815/91‑1 (MQ=255)

                                                 aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt                                           <  2:1968816/91‑1 (MQ=255)

                                                  tttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTg                                          <  1:4160145/91‑1 (MQ=255)

                                                   ttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGa                                         >  1:6363860/1‑91 (MQ=255)

                                                    tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                        <  1:6938228/91‑1 (MQ=255)

                                                        aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                    <  2:4357197/91‑1 (MQ=255)

                                                         aaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat                                   <  2:3245838/91‑1 (MQ=255)

                                                          aaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                  >  2:3928038/1‑91 (MQ=255)

                                                             gCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcat                               >  2:2735963‑M1/1‑30 (MQ=255)

                                                              ccGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt                              <  1:2841084/91‑1 (MQ=255)

                                                               cGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                             >  1:1016563/1‑91 (MQ=255)

                                                               cGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                             >  2:6292592/1‑91 (MQ=255)

                                                                 ttGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa                           >  1:5884721/1‑91 (MQ=255)

                                                                  tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                          <  1:2973535/91‑1 (MQ=255)

                                                                    gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                        <  2:2946365/91‑1 (MQ=255)

                                                                    gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                        <  1:4496024/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                  <  1:599154/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                  <  2:5577060/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                  >  1:3130003/1‑91 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                  <  1:1336928/91‑1 (MQ=255)

                                                                           cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCttt                 <  1:5613115/91‑1 (MQ=255)

                                                                           cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCttt                 >  1:83511/1‑91 (MQ=255)

                                                                             aaaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg               >  2:1220789/1‑91 (MQ=255)

                                                                              aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa              <  2:1462305/91‑1 (MQ=255)

                                                                               aCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGAt             <  1:782638/91‑1 (MQ=255)

                                                                                cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa            >  2:1723567/1‑91 (MQ=255)

                                                                                 tACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATac           <  1:1390857/91‑1 (MQ=255)

                                                                                  aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct          >  1:1187682‑M1/1‑9 (MQ=255)

                                                                                  aCGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca          >  1:6654175/1‑91 (MQ=255)

                                                                                  aCGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca          >  1:4367954/1‑91 (MQ=255)

                                                                                  aCGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca          >  1:1493577/1‑91 (MQ=255)

                                                                                   cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta         >  2:368970‑M1/1‑8 (MQ=255)

                                                                                   cGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATacac         <  1:5918357/91‑1 (MQ=255)

                                                                                    ggCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctat        <  1:5968445‑M1/91‑85 (MQ=255)

                                                                                    ggCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt        <  2:4881727/91‑1 (MQ=255)

                                                                                    ggCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt        >  2:3435460/1‑91 (MQ=255)

                                                                                     gCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg       >  1:2413050/1‑91 (MQ=255)

                                                                                     gCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg       >  1:1956178/1‑91 (MQ=255)

                                                                                     gCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg       >  1:33985/1‑91 (MQ=255)

                                                                                      cTTTTttctaaatctctagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa      <  2:5397734‑M1/91‑87 (MQ=255)

                                                                                         ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct   <  2:1616048‑M1/91‑90 (MQ=255)

                                                                                         ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga   <  1:2258690/91‑1 (MQ=255)

                                                                                         ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga   <  1:3866395/91‑1 (MQ=255)

                                                                                         ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga   <  1:4702203/91‑1 (MQ=255)

                                                                                          tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta  >  1:1872008‑M1/1‑1 (MQ=255)

                                                                                          tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta  <  2:1115071‑M1/91‑91 (MQ=255)

GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2862984‑2863164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.