BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	435 (1.220)	6 (0.020)	6/150	NT	1.5%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	6 (0.020)	6/150	NT	1.5%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 451 total aligned reads displayed.

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

tataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAgg                                                                                      <  1:3093154/91‑1 (MQ=31)

tataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAgg                                                                                      <  2:4409743/91‑1 (MQ=31)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  2:1582272/91‑1 (MQ=33)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    >  2:3505924/1‑91 (MQ=33)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  2:5097575/1‑91 (MQ=34)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  2:3780835/1‑91 (MQ=34)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   <  1:2118174/91‑1 (MQ=34)

     aaCACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgagaga                                                                                 <  1:6471030/91‑1 (MQ=37)

      acacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAt                                                                                >  1:2039282/1‑91 (MQ=38)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:2194494/1‑91 (MQ=39)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:5149243/1‑91 (MQ=39)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:299596/1‑91 (MQ=39)

         ccATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTTCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGa                                                                             <  2:673909/91‑1 (MQ=255)

         ccATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGa                                                                             <  1:726184/91‑1 (MQ=255)

          cATTGGAAGTATTTATGAGTTTCATCGAAGATGATCAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGaa                                                                            >  2:1095388/1‑91 (MQ=255)

          cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGaa                                                                            >  1:5970541/1‑91 (MQ=255)

            ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          >  1:5696365/1‑91 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:4525267/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:1425172/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:2408127/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:4427944/91‑1 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  2:604032/1‑91 (MQ=255)

               gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       <  1:3488973/91‑1 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      >  2:4564083/1‑91 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      >  2:4372459/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  2:4079379/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  2:5630581/1‑91 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  1:3734128/1‑91 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  2:6133271/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               >  2:1866224/1‑91 (MQ=255)

                         tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             <  1:4789852/91‑1 (MQ=255)

                           aGTTTCATCGTAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  1:6974414/91‑1 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  2:1760910/91‑1 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  1:1033479/91‑1 (MQ=255)

                            gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  2:3372599/1‑66 (MQ=37)

                            gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAAt                                                          <  2:2887331/91‑1 (MQ=255)

                            gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAAt                                                          >  1:6632916/1‑91 (MQ=255)

                             tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAAtt                                                         <  2:5477918/91‑1 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       >  1:577496/1‑91 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       <  1:1302465/91‑1 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       <  2:824023/91‑1 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTa                                                     >  2:3875132/1‑91 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTa                                                     >  1:69519/1‑91 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTa                                                     <  1:3354036/91‑1 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    <  2:6771581/91‑1 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  1:1702261/1‑91 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  2:594705/1‑91 (MQ=255)

                                   cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   >  2:642478/1‑91 (MQ=255)

                                   cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   <  1:53306/91‑1 (MQ=255)

                                   cGAAGATGATAAACTTGTCCAGCTTAATTCGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   <  1:6179632/91‑1 (MQ=255)

                                    gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaaa                                                  >  2:6544775/1‑91 (MQ=255)

                                     aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAAc                                                 <  1:3265814/91‑1 (MQ=255)

                                     aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAAc                                                 <  1:3240223/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  2:2144104/1‑91 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  2:4741834/1‑91 (MQ=255)

                                       gatgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACaa                                               <  2:6938903/91‑1 (MQ=255)

                                         tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATc                                             <  1:3590073/91‑1 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            <  2:2650914/91‑1 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCat                                           <  1:856167/91‑1 (MQ=255)

                                            tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCata                                          >  1:471146/1‑91 (MQ=255)

                                             aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCatat                                         >  2:1420719/1‑91 (MQ=255)

                                              aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:6258825/1‑91 (MQ=255)

                                                  tGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGa                                    <  1:2624223/91‑1 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  2:5161416/1‑91 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  1:2291987/1‑91 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  2:6238042/91‑1 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  1:1116687/1‑91 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 <  2:2502652/91‑1 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 >  1:2711827/1‑91 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 >  2:1976861/1‑91 (MQ=255)

                                                      cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                >  2:10142/1‑91 (MQ=255)

                                                      cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                >  2:4903522/1‑91 (MQ=255)

                                                       aGCTTAATTTGTCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  2:6999015/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:3835218/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:1850147/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:3902196/91‑1 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAACAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              >  2:3108039/1‑91 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              >  2:2340608/1‑91 (MQ=255)

                                                             aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         >  1:4253902/1‑91 (MQ=255)

                                                             aTTTGACAACCTAAAGATTTATAAAAAAGTAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGCGGATTTGAAAAAtt                         >  1:6416026/1‑91 (MQ=255)

                                                                tGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGa                      <  2:4242952/91‑1 (MQ=255)

                                                                 gACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  2:4968687/91‑1 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    <  1:3512602/91‑1 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    >  2:1256648/1‑91 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    >  1:3961055/1‑91 (MQ=255)

                                                                    aaTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGt                  <  2:1363572/91‑1 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 >  1:5486097/1‑91 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 <  1:2749360/91‑1 (MQ=255)

                                                                       cTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGCCTGTAAc               >  1:5538444/1‑91 (MQ=255)

                                                                            gATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGt          <  1:5593249/91‑1 (MQ=40)

                                                                             aTTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGta         >  1:2826059/1‑91 (MQ=39)

                                                                             aTTTATAAAAAAGGAGAAATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGta         >  2:2414745/1‑91 (MQ=255)

                                                                               ttATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGtata       <  2:2785720/91‑1 (MQ=37)

                                                                                 ataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAAc     >  1:6861451/1‑91 (MQ=34)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    >  2:5665454/1‑91 (MQ=33)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   <  1:5389071/91‑1 (MQ=32)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   <  1:1593275/91‑1 (MQ=32)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   <  1:4154494/91‑1 (MQ=32)

                                                                                    aaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTc  <  1:5008471/91‑1 (MQ=31)

                                                                                    aaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTc  <  2:5433112/91‑1 (MQ=31)

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.