| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2866995 | 314 (0.880) | 10 (0.030) | 9/134 | NT | 3.4% | intergenic (‑394/+59) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | = 2867006 | 306 (1.030) | intergenic (‑405/+48) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 506 total aligned reads displayed.
AGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT > USA300TCH1516_ALE/2866905‑2867085 | gagCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTg > 1:439880/1‑91 (MQ=255) gCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGtt < 2:403753/91‑1 (MQ=255) cATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCCCGTAAAACAAAAAAAAAGACAAAGCTGTTa > 2:2747284/1‑91 (MQ=255) cATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTa > 1:3682775/1‑91 (MQ=255) aTAGAACGTTGATTTATGTACCAGCCTGATCAACATATAAATGTAAATTTTTATGTTTCATGTAAAACAAAAAAAAATACAAAGCTGTTAt < 1:5551570/91‑1 (MQ=255) tAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTaagatc < 2:6504360‑M1/91‑7 (MQ=255) tAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATg < 1:3254951/91‑1 (MQ=255) gAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAACACAAAAAAAAAGACAAATCTGATATGAt > 1:1883049/1‑91 (MQ=255) gAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGAt > 2:3771718/1‑91 (MQ=255) aaCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATc > 1:580469/1‑91 (MQ=255) aaCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAGACAAAGCTGTTATGATCt > 1:2662695/1‑91 (MQ=255) cATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCtt > 2:5790055/1‑91 (MQ=255) ttGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTag < 1:1068591‑M2/91‑3 (MQ=255) ttGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTag < 2:250308‑M2/91‑3 (MQ=255) ttGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTag < 1:182735‑M2/91‑3 (MQ=255) agaTTTATGTACAAGCATGATAAACATATAAATAAAAATTTTTATGTTTAAAGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagc > 2:1895042‑M2/2‑88 (MQ=255) gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagct > 2:1378624‑M2/1‑87 (MQ=255) gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAAACAAAGCTGTTATGATCTTagct < 2:2385173‑M2/91‑5 (MQ=255) aTTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagctt < 1:6597688‑M2/91‑6 (MQ=255) aTTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagctt < 1:2935851‑M2/91‑6 (MQ=255) tttATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagcttt < 1:2743214‑M2/91‑7 (MQ=255) ttATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagct > 2:1012517‑M2/1‑84 (MQ=255) tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtct < 2:6596189‑M2/91‑11 (MQ=255) cgtACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtct < 1:5221253‑M2/90‑11 (MQ=255) ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATTTTAGCTTTGTCTTTTa > 1:3149298/1‑91 (MQ=255) ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTa > 1:6369146/1‑91 (MQ=255) cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt < 1:2198671/91‑1 (MQ=255) cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt > 2:1185159/1‑91 (MQ=255) aGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTaagatcataacagctttgtcttttttt < 1:4183377‑M1/91‑28 (MQ=255) ccTGAAAAACATATAAATATAAATTTTTATTTTTAAAAAAAAAAAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtg < 2:681930/91‑1 (MQ=255) cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt < 1:4864315/91‑1 (MQ=255) gATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTa > 1:1353345/1‑91 (MQ=255) tCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGt < 1:5335194/91‑1 (MQ=255) cAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtc > 1:3478894/1‑91 (MQ=255) cAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtc > 2:198900/1‑91 (MQ=255) aaCATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca > 2:4756862/1‑91 (MQ=255) aCATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat > 1:5061732/1‑91 (MQ=255) atataaatataaATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca < 1:2117027/91‑1 (MQ=255) atataaatataaATTTTTATGTTTAACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca < 2:3430337/91‑1 (MQ=255) aaatataaatTTTTATGTTGCACGTAAAACAAAAAAAAAGTCAAAGCTGTTATGATCTTAGCTTTGACGTTTATGTGTTAATCATCATGta > 2:5560542/1‑91 (MQ=255) aaatataaatTTTTAGGTTTCACGTAAAAC‑AAAAAAAAGACAAAGTTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGtat < 2:6771837/91‑1 (MQ=255) aatataaatTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGtat > 2:289773/1‑91 (MQ=255) atataaatTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTTTTAGTCATCATGtata > 1:564195/1‑91 (MQ=255) atgaatGTTTATGTTTCACGAAAAAAAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACg < 2:3087840/88‑1 (MQ=255) aaatTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGAc < 2:5221253/91‑1 (MQ=255) aaatTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGAc > 2:598992/1‑91 (MQ=255) aatTTTTATGTTTCACAAAAAAAAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACa < 2:5510799/91‑1 (MQ=255) atTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACAt > 1:676144/1‑91 (MQ=255) tttttATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTTTTAGTCATCTTTTATACGTCATc > 1:2543625/1‑91 (MQ=255) tttttATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATc > 2:5360757/1‑91 (MQ=255) ttttATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc > 1:6517194/1‑91 (MQ=255) tATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac > 1:2409131/1‑91 (MQ=255) ttgTTTCACGTAAAACAAAAAAAAAGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaancataaaaatttatat < 1:6111178‑M1/90‑58 (MQ=255) aTGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctact > 1:4762167/1‑91 (MQ=255) tGTTTCACGTAAGACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctacta < 2:4495896/91‑1 (MQ=255) tGTTTCACGTAAAACAAAAAAAAAGACAAAGCTgttatgatcttagctttgtctttttttttgttttacgtgaaacataaaaatttatatt > 1:6284556‑M1/1‑33 (MQ=255) gTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac > 2:3238431/1‑91 (MQ=255) gTTTAACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac < 2:863981/91‑1 (MQ=255) tttCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact < 1:1697577/91‑1 (MQ=255) tttCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact < 1:6471357/91‑1 (MQ=255) aCGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACg > 1:3959444/1‑91 (MQ=255) gTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt < 2:1906433/91‑1 (MQ=255) gTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt < 2:3890250/91‑1 (MQ=255) aCAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatat < 1:3423997/91‑1 (MQ=255) aCAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatat > 2:3587580/1‑91 (MQ=255) aaaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTAATCATGTATACGACATCCTACTACTAACGTTtatata < 2:2078922/90‑1 (MQ=255) aaaaaaaaaGACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcagg < 2:4597413‑M2/91‑63 (MQ=255) aaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATAtt < 2:219822/91‑1 (MQ=255) aaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATAtt < 1:1443741/91‑1 (MQ=255) aaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATAtt > 2:316327/1‑91 (MQ=255) aaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTc < 2:2451308/91‑1 (MQ=255) aaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCg < 2:1738773/91‑1 (MQ=255) aaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCg > 1:124711/1‑91 (MQ=255) aaaaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctgg < 1:4959873‑M1/91‑78 (MQ=255) aaaaaGACAAAGCTGTTATGATCTTAGCTATGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGa < 1:6180784/91‑1 (MQ=255) aaaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggt < 2:6153820‑M1/91‑79 (MQ=255) aaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta > 1:3380000‑M1/1‑12 (MQ=255) aaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta > 1:998498‑M1/1‑12 (MQ=255) aaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAt < 2:5084828/91‑1 (MQ=255) aGACAAAGCTaagatcataacagctttgtctttttttttttttttcttgaaacataaaaatttatatttatatgtttatcaggctggtaca > 2:6997679‑M1/1‑10 (MQ=255) aGACAAAGCTaagatcataacagctttgtcttttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtac > 1:2882653‑M1/1‑10 (MQ=255) aGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 1:4603692‑M1/91‑82 (MQ=255) aGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca > 2:4970584‑M1/1‑10 (MQ=255) aGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt < 2:2601426/91‑1 (MQ=255) aGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt < 2:6374488/91‑1 (MQ=255) gACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacat < 1:3606750‑M2/91‑72 (MQ=255) gACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac > 2:4296361/1‑68 (MQ=255) gACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac < 1:4296361/68‑1 (MQ=255) aCAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacata > 1:5990951‑M1/1‑8 (MQ=255) aCAAAGCTaagaacataacagctatgtcttttttttgttttatgtgaaacataaaaatttatatttatatgttgatcatgctggtacataa > 2:1569621‑M1/1‑8 (MQ=255) aCAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttttt < 2:1291569/91‑1 (MQ=255) cAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTa > 1:2339241/1‑91 (MQ=255) cAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTa < 1:809604/91‑1 (MQ=255) aaaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAt < 2:1239525/91‑1 (MQ=255) aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt < 1:5449131/91‑1 (MQ=255) aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttgtatttatatgttgatcaggctggtacataaatc < 1:6940918‑M1/91‑88 (MQ=255) aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataa < 1:1012442‑M1/88‑85 (MQ=255) gCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca < 2:4800849‑M1/91‑89 (MQ=255) cTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCa > 2:5894497/1‑91 (MQ=255) cTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCa < 2:1488700/91‑1 (MQ=255) | AGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT > USA300TCH1516_ALE/2866905‑2867085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |