New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 64914 (0.700)27 (0.040)
+TTGTTATATTAAGTTTATTATAGCACTTTAAAT		 14/94 NT 9.2% intergenic (–/‑168) –/repA –/replication protein A
?CP000731 = 27041 0 (0.000)intergenic (‑194/–) USA300HOU_pUSA300HOUMR0033/– partitioning protein/–

Only 100 of 1563 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147
                                                                                          |                                                                                   
aagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGttt                                                                                     >  1:62880‑M1/28‑91 (MQ=255)
aagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGttt                                                                                     >  1:3319679‑M1/28‑91 (MQ=255)
 agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                    >  1:6602154‑M1/27‑91 (MQ=255)
  gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTgg                                                                                   >  1:946303‑M1/26‑91 (MQ=255)
   ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                  >  1:3085837‑M1/25‑91 (MQ=255)
      tattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaat                                                                               >  1:6084291‑M1/22‑91 (MQ=255)
      tattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaat                                                                               <  1:2787294‑M1/70‑1 (MQ=255)
        ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             <  2:500204‑M1/72‑1 (MQ=255)
        ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             <  1:3193363‑M1/72‑1 (MQ=255)
         tttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATaaa                                                                            >  2:831640‑M1/19‑91 (MQ=255)
           tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                          >  1:186850‑M1/17‑91 (MQ=255)
            cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                         >  1:4432533‑M1/16‑91 (MQ=255)
            cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                         <  2:3613460‑M1/76‑1 (MQ=255)
             ccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                        <  1:4077605‑M1/77‑1 (MQ=255)
               ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTTCTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                      >  2:4221808‑M1/13‑91 (MQ=255)
               ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                      <  1:466551‑M1/79‑1 (MQ=255)
               ttttataagtttATTTAAACTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                      >  1:5363094‑M1/13‑91 (MQ=255)
                tttataagtttATTTAAAGTGCTATAATAAGCTTAATATAACAAAAACCCCGACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTa                                                                     >  2:248111‑M1/12‑91 (MQ=255)
                 ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                    <  1:2693361‑M1/81‑2 (MQ=255)
                  tataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                   <  2:6549252‑M1/82‑1 (MQ=255)
                   ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  >  2:7005631‑M1/9‑91 (MQ=255)
                   ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  >  2:1142309‑M1/9‑91 (MQ=255)
                   ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  >  1:2299230‑M1/9‑91 (MQ=255)
                     aagtttATTTAACGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGTTTTGGTAATAAAACGTTTAGAAAc                                                                >  2:5642742‑M1/7‑91 (MQ=255)
                     aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  1:2031218‑M1/7‑91 (MQ=255)
                     aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  1:810938‑M1/7‑91 (MQ=255)
                     aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  2:1707830‑M1/7‑91 (MQ=255)
                      agtttATTTAAAGTGCTATAATAAACTTAATATAACAACAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                               <  2:4099534‑M1/86‑1 (MQ=255)
                       gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                              <  1:2553700‑M1/87‑1 (MQ=255)
                        tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             <  2:5230270‑M1/88‑1 (MQ=255)
                        tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             <  2:2001704‑M1/88‑1 (MQ=255)
                        tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             >  2:6332494‑M1/4‑91 (MQ=255)
                            tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  2:2114702/1‑91 (MQ=255)
                               aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:2444701/91‑1 (MQ=255)
                               aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  2:17930/91‑1 (MQ=255)
                               aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      >  1:1475691/1‑91 (MQ=255)
                                aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     >  1:6430148/1‑91 (MQ=255)
                                aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:1599360/91‑1 (MQ=255)
                                 aGTGCTATAATAAACTTACTCTAACAAAATCCCCAACTACTCGTAACAGTCGGACCTTGGTAATAACCCGTTCAGAACCTGTTTATTcata                                                    >  2:6833053/1‑91 (MQ=255)
                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                    >  2:1572201/1‑91 (MQ=255)
                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                    >  2:2996694/1‑91 (MQ=255)
                                  gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                   <  2:3782669/91‑1 (MQ=255)
                                  gTGCTATAATAAACTTAATATAACAAAAACCCCAACGACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                   <  1:3002440/91‑1 (MQ=255)
                                  gTGCTAGAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                   <  2:6413797/91‑1 (MQ=255)
                                     cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTGATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                <  2:5717978/91‑1 (MQ=255)
                                     cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                <  1:756796/91‑1 (MQ=255)
                                       ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              <  1:681321/91‑1 (MQ=255)
                                       ataataAACTTAATATAACAAAAACCCCAACTACTGGTAAAAGTCGGGGTTTTGTAATAAAACGTTTAGAAACTGTCTATTTATATAAttt                                              >  1:5822298/1‑91 (MQ=255)
                                        taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATGTAAtttt                                             >  1:5530908/1‑91 (MQ=255)
                                            aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                         <  1:1247621/91‑1 (MQ=255)
                                              aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                       >  1:3444208/1‑91 (MQ=255)
                                                ttAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                     <  2:1256265/91‑1 (MQ=255)
                                                 tAATATAACAGAAACCCCAACTACTGGAAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                    <  2:1451596/91‑1 (MQ=255)
                                                 tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGATTATTTATATAATTTTCGATACTTg                                    >  1:3787200/1‑91 (MQ=255)
                                                  aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                   <  2:3119953/91‑1 (MQ=255)
                                                  aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                   <  1:2897168/91‑1 (MQ=255)
                                                   atatAACAAATACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTCTATAATTTTCTATACTTGta                                  >  2:3451561/1‑91 (MQ=255)
                                                   atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  >  1:6551698/1‑91 (MQ=255)
                                                   atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  <  2:2379928/91‑1 (MQ=255)
                                                    tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                 <  1:6181357/91‑1 (MQ=255)
                                                     ataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTAGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                <  1:5777071/91‑1 (MQ=255)
                                                      taACAAAATCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                               <  1:3656969/91‑1 (MQ=255)
                                                      taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                               >  1:5678606/1‑91 (MQ=255)
                                                      taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                               >  1:4566292/1‑91 (MQ=255)
                                                        aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                             <  2:4605713/91‑1 (MQ=255)
                                                         cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                            <  1:1012271/91‑1 (MQ=255)
                                                          aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                           <  2:2212523/91‑1 (MQ=255)
                                                          aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                           <  2:4363985/91‑1 (MQ=255)
                                                           aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                          <  2:5465577/91‑1 (MQ=255)
                                                           aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                          >  2:6113101/1‑91 (MQ=255)
                                                           aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                          <  2:3978892/91‑1 (MQ=255)
                                                            AAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAt                         >  1:3521258‑M1/1‑91 (MQ=255)
                                                             aaCCCCAACTACTGGTAATAGTCGGGGTTTttgttatattatgtttattatagcactttaaataaacttataaaagggaaaatatagcttt                        >  2:4697673‑M1/1‑30 (MQ=255)
                                                             AACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                        >  1:5961359‑M1/1‑91 (MQ=255)
                                                              ACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                       <  2:1886077‑M1/91‑1 (MQ=255)
                                                               CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                      <  2:2779651‑M1/91‑1 (MQ=255)
                                                                CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     <  1:3921528‑M1/91‑1 (MQ=255)
                                                                 CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                    <  1:6727859‑M1/91‑1 (MQ=255)
                                                                  cAACTACTGGCAATAGCCGGGGTTTttgttatattaagttgattatagcactttaaataaacttataaacgggaaaatatagctttaccaa                   >  1:2236181‑M1/1‑25 (MQ=255)
                                                                  CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                   >  2:5361779‑M1/1‑91 (MQ=255)
                                                                  CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                   >  2:5101787‑M1/1‑91 (MQ=255)
                                                                  CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                   >  1:1130598‑M1/1‑91 (MQ=255)
                                                                    actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                 >  2:5901662/1‑91 (MQ=255)
                                                                    actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                 <  1:4881449/91‑1 (MQ=255)
                                                                        ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             <  1:1712754/91‑1 (MQ=255)
                                                                        ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             <  2:6230223/91‑1 (MQ=255)
                                                                          ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           <  2:4824236/91‑1 (MQ=255)
                                                                          ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           >  1:4021393/1‑91 (MQ=255)
                                                                           gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt          >  2:673458/1‑91 (MQ=255)
                                                                            tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg         <  1:5181668/91‑1 (MQ=255)
                                                                            tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg         >  1:4299231/1‑91 (MQ=255)
                                                                             tctAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATCATATCTTAGTGc        >  2:4481353/3‑91 (MQ=255)
                                                                             aaTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           <  1:1359734/88‑1 (MQ=255)
                                                                             aaTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGc        >  2:6001168/1‑91 (MQ=255)
                                                                              aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCa       >  1:4792746/1‑91 (MQ=255)
                                                                              aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCa       <  1:4174263/91‑1 (MQ=255)
                                                                               tAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCaa      >  1:6984112/1‑91 (MQ=255)
                                                                                 gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    >  1:5020521/1‑91 (MQ=255)
                                                                                 gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    >  2:262741/1‑91 (MQ=255)
                                                                                   cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  >  2:3299793/1‑91 (MQ=255)
                                                                                          |                                                                                   
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.