New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	12911 =	NA (NA)	11 (0.010)	7/148	NT	NA	coding (405/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
	?	CP000731	12926 =	NA (NA)					coding (420/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA  >  CP000731/12854‑12997                                                          |                                                                                       taccAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAAtt                                                       <  2:6341695/88‑1 (MQ=1)                                                      agtcACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAGCCTGACTGCCATTGTACATCGAAATATCTGAATaa  <  2:3717970/88‑1 (MQ=0)                                                          |                                                                                       TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA  >  CP000731/12854‑12997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.