New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000731 | = 12916 | NA (NA) | 18 (0.010) | 11/148 | NT | NA | coding (410/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
? | CP000731 | = 12919 | NA (NA) | coding (413/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA > CP000731/12854‑12997 | taccAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAAtt < 2:6341695/88‑1 (MQ=1) agtcACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAGCCTGACTGCCATTGTACATCGAAATATCTGAATaa < 2:3717970/88‑1 (MQ=0) | TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA > CP000731/12854‑12997 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |