New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 12916	NA (NA)	18 (0.010)	11/148	NT	NA	coding (410/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
	?	CP000731	= 12919	NA (NA)					coding (413/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA  >  CP000731/12854‑12997                                                                  |                                                                               taccAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAAtt                                                       <  2:6341695/88‑1 (MQ=1)                                                      agtcACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAGCCTGACTGCCATTGTACATCGAAATATCTGAATaa  <  2:3717970/88‑1 (MQ=0)                                                                  |                                                                               TATCAAACGTCTCATTAAACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAA  >  CP000731/12854‑12997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.