BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 161203	321 (0.900)	18 (0.050)	11/150	NT	5.3%	coding (730/816 nt)	phnE_1	Phosphate‑import permease protein PhnE
*	?	USA300TCH1516_ALE	= 161213	338 (1.010)	18 (0.050)	11/150	NT	5.3%	coding (720/816 nt)	phnE_1	Phosphate‑import permease protein PhnE

Only 100 of 417 total aligned reads displayed.

AATACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCAAAG  >  USA300TCH1516_ALE/161123‑161303

 aTACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAc                                                                                           >  1:6788014‑M2/1‑90 (MQ=255)

 aTACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAc                                                                                           >  2:2896472‑M2/1‑90 (MQ=255)

  tACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAcg                                                                                          >  2:6060923‑M2/1‑89 (MQ=255)

  tACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAcg                                                                                          >  1:4254795‑M2/1‑89 (MQ=255)

   aCGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAcgt                                                                                         <  1:6357574‑M2/91‑4 (MQ=255)

   aCGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAAcgt                                                                                         <  2:4244287‑M2/91‑4 (MQ=255)

      ttttCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGtt                                                                                      >  2:5022589/1‑91 (MQ=255)

             aTTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATgg                                                                               <  1:2065226/91‑1 (MQ=255)

             aTTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATgg                                                                               <  2:320145/91‑1 (MQ=255)

             aTTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATgg                                                                               >  1:2828417/1‑91 (MQ=255)

             aTTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATgg                                                                               <  2:6249786/91‑1 (MQ=255)

             aTTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGAGTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATgg                                                                               <  2:2650603/91‑1 (MQ=255)

              ttGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGc                                                                              >  1:403995/1‑91 (MQ=255)

              ttGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGc                                                                              >  2:5263901/1‑91 (MQ=255)

              ttGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGc                                                                              >  1:5616798/1‑91 (MQ=255)

               tGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTGAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCa                                                                             >  2:5600896/1‑91 (MQ=255)

               tGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCa                                                                             <  1:2443574/91‑1 (MQ=255)

               tGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCa                                                                             <  1:3959779/91‑1 (MQ=255)

               tGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCa                                                                             <  1:6873191/91‑1 (MQ=255)

               tGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCa                                                                             >  1:2513087/1‑91 (MQ=255)

                 aaCCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCaaa                                                                           <  2:6578536/91‑1 (MQ=255)

                   ccGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAata                                                                         >  2:4954267/1‑91 (MQ=255)

                   ccGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAata                                                                         <  1:5258059/91‑1 (MQ=255)

                    cGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAatat                                                                        >  1:4743643/1‑91 (MQ=255)

                     ggAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATg                                                                       <  1:788878/91‑1 (MQ=255)

                     ggAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATg                                                                       <  1:1590667/91‑1 (MQ=255)

                       aaaTTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAg                                                                     <  1:2307088/91‑1 (MQ=255)

                        aaTTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgt                                                                    >  2:1738005/1‑91 (MQ=255)

                         aTTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgtg                                                                   <  2:3362015/91‑1 (MQ=255)

                          ttAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgtgg                                                                  <  2:5349207/91‑1 (MQ=255)

                          ttAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgtgg                                                                  >  2:925212/1‑91 (MQ=255)

                          ttAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgtgg                                                                  >  1:118959/1‑91 (MQ=255)

                             aaTCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGgtgt                                                               >  1:1958246/1‑91 (MQ=255)

                              aTCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTc                                                              <  1:877733/91‑1 (MQ=255)

                              aTCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTc                                                              <  2:3013689/91‑1 (MQ=255)

                              aTCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTc                                                              >  1:6179268/1‑91 (MQ=255)

                               tCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTcc                                                             >  1:3503410/1‑91 (MQ=255)

                                cGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTccc                                                            >  2:2783257/1‑91 (MQ=255)

                                  aCAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGa                                                          >  1:1485957/1‑91 (MQ=255)

                                      ttGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATacc                                                      <  2:1513308/91‑1 (MQ=255)

                                       tGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATacca                                                     >  1:982759/1‑91 (MQ=255)

                                          gACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATAccacca                                                  >  1:1803964/1‑91 (MQ=255)

                                          gACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATAccacca                                                  >  2:4324237/1‑91 (MQ=255)

                                            ccATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGc                                                <  1:6845170/91‑1 (MQ=255)

                                             cATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGcc                                               >  2:3613036/1‑91 (MQ=255)

                                             cATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGcc                                               <  1:3777715/91‑1 (MQ=255)

                                                 aGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCaa                                           <  1:5755690/91‑1 (MQ=255)

                                                  gTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAAt                                          <  1:3874677/91‑1 (MQ=255)

                                                    aCTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTa                                        >  2:5880230/1‑91 (MQ=255)

                                                    aCTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTa                                        >  2:6703641/1‑91 (MQ=255)

                                                     cTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAgtg                                                                   >  2:5813081/1‑63 (MQ=255)

                                                      tAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGc                                      <  2:1899742/91‑1 (MQ=255)

                                                       aaaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcc                                     >  2:3427747/1‑91 (MQ=255)

                                                       aaaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcc                                     <  2:4114529/91‑1 (MQ=255)

                                                       aaaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcc                                     >  1:1002128/1‑91 (MQ=255)

                                                       aaaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcc                                     >  2:6543407/1‑91 (MQ=255)

                                                       aaaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcc                                     >  1:1346395/1‑91 (MQ=255)

                                                        aaCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGccc                                    <  1:2768860/91‑1 (MQ=255)

                                                        aaCCGATGAATATAATACCTACACGGTCCCAAGAACGTCTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGccc                                    >  1:6734673/1‑91 (MQ=255)

                                                         aCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAAt                                          >  1:4324985/1‑84 (MQ=255)

                                                         aCCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGcccc                                   <  1:3613036/91‑1 (MQ=255)

                                                            gATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGt                                <  2:1567767/91‑1 (MQ=255)

                                                            gATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGt                                >  1:3311150/1‑91 (MQ=255)

                                                              ttAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGtat                              >  2:1990993/1‑91 (MQ=255)

                                                               taatataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGtata                             >  1:2193062/1‑91 (MQ=255)

                                                               taatataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGtata                             <  1:5991562/91‑1 (MQ=255)

                                                                aatataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAg                            <  2:2250425/91‑1 (MQ=255)

                                                                aatataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAg                            <  2:4306149/91‑1 (MQ=255)

                                                                 atataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGa                           >  2:5698905/1‑91 (MQ=255)

                                                                 atataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGa                           >  2:368263/1‑91 (MQ=255)

                                                                   ataataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAg                         >  1:512375/1‑91 (MQ=255)

                                                                      ataCCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTg                      >  2:2547367/1‑91 (MQ=255)

                                                                          cTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACTAGCCCCAATTAGCCCCAGTATAGAAGCTGAACg                  <  2:1092448/91‑1 (MQ=255)

                                                                          cTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACg                  >  1:1893774/1‑91 (MQ=255)

                                                                          cTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACg                  <  2:1372969/91‑1 (MQ=255)

                                                                            acacGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTa                <  1:4541718/91‑1 (MQ=255)

                                                                            acacGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTa                <  1:5491250/91‑1 (MQ=255)

                                                                            acacGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTa                >  2:4846354/1‑91 (MQ=255)

                                                                              acGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCaa                                           <  1:2603995/62‑1 (MQ=255)

                                                                              acGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAg              <  2:732188/91‑1 (MQ=255)

                                                                               cGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGt             >  1:5910510/1‑91 (MQ=255)

                                                                                ggTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGtt            <  1:5018813/91‑1 (MQ=255)

                                                                                ggTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGtt            <  2:399931/91‑1 (MQ=255)

                                                                                  tCCCAAGAAcgtgtaggtattatattaatcggtttagtactaatggtcgcaattgtcgatttaatttccggttcaatccgaaaacgtattg          <  1:3129450‑M2/91‑83 (MQ=255)

                                                                                   cccAAGAAcgtgtaggtattatattaatcggtttagtactaatggtcgcaattgtcgatttaatttccggttcaatccgaaaacgtattgt         <  2:4610439‑M2/91‑84 (MQ=255)

                                                                                   cccAAGAAcgtgtaggtattatattaatcggtttagtactaatggtcgcaattgtcgatttaatatccggttcaatccgaaaacgtattgt         <  2:6889644‑M2/91‑84 (MQ=255)

                                                                                   cccAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAg         >  2:1182883/1‑91 (MQ=255)

                                                                                    ccAAGAAcgtgtaggtattatattaatcggtttagtactaatggtcgcaattgtcgatttaatttccggttcaatccgaaaacgtattgtt        <  1:3992834‑M2/91‑85 (MQ=255)

                                                                                     cAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTa                                        <  2:385663/58‑1 (MQ=255)

                                                                                     cAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGtt       >  1:2935111/1‑91 (MQ=255)

                                                                                     cAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGtt       >  2:3491573/1‑91 (MQ=255)

                                                                                     cAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGtt       >  2:4729275/1‑91 (MQ=255)

                                                                                       aGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCa     >  2:6165029/1‑91 (MQ=255)

                                                                                       aGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCa     >  1:1390869/1‑91 (MQ=255)

                                                                                        gAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCaa    >  1:65206/1‑91 (MQ=255)

                                                                                        gAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCaa    <  2:6754860/91‑1 (MQ=255)

                                                                                         aaCGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCACTTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCaaa   <  2:4467890/91‑1 (MQ=255)

                                                                                         aaCGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCaaa   >  1:6100591/1‑91 (MQ=255)

                                                                                         aaCGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCaaa   <  1:3673802/91‑1 (MQ=255)

                                                                                          aCGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCAAAg  <  2:6357574/91‑1 (MQ=255)

AATACGTTTTCGGATTGAACCGGAAATTAAATCGACAATTGCGACCATTAGTACTAAACCGATTAATATAATACCTACACGGTCCCAAGAACGTGTTTGAATGGCAAATATGAGTGGTGTCCCGATACCACCAGCCCCAATTAGCCCCAGTATAGAAGCTGAACGTAAGTTTAGTTCAAAG  >  USA300TCH1516_ALE/161123‑161303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.