| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 431147 | 290 (0.810) | 16 (0.050) | 11/140 | NT | 5.9% | intergenic (+25/+56) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP |
| ? | USA300TCH1516_ALE | = 431177 | 260 (0.830) | intergenic (+55/+26) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP | |||||
Only 100 of 435 total aligned reads displayed.
GAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTA > USA300TCH1516_ALE/431087‑431267 | gAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTaga < 1:4653371/91‑1 (MQ=255) aaCAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAg > 2:2410938‑M2/1‑90 (MQ=255) aaCAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAg < 1:5272855‑M2/91‑2 (MQ=255) aaCAATTGCAAAAATCAGGCTTAATACAGCGACAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAg < 1:2013779‑M2/91‑2 (MQ=255) aaTTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggg < 2:3576096‑M2/91‑5 (MQ=255) aTTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAggggg > 2:5122511‑M2/1‑86 (MQ=255) ttGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggc > 1:3996456‑M2/1‑85 (MQ=255) ttGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggc < 1:2925975‑M2/91‑7 (MQ=255) tGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcg > 2:1086604‑M2/1‑84 (MQ=255) tGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcg < 1:6320847‑M2/91‑8 (MQ=255) gCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAggtggcgg > 2:6840742‑M2/1‑83 (MQ=255) gataatgctgcattaacttcacactaattcattgcaagaaatACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCggg > 2:707128‑M1/43‑91 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg < 1:2252958‑M2/91‑10 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg > 1:6228161‑M2/1‑82 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg > 2:1827527‑M2/1‑82 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg < 2:6539303‑M2/91‑10 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg > 1:3872064‑M2/1‑82 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg < 1:3229731‑M2/91‑10 (MQ=255) cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcggg > 2:4905088‑M2/1‑82 (MQ=255) aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcgggt < 1:2099465‑M2/91‑11 (MQ=255) aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggggcgggt < 2:2707361‑M2/91‑11 (MQ=255) aaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTa < 1:1442247/91‑1 (MQ=255) aaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTa > 2:68179/1‑91 (MQ=255) aaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTAt < 2:5216817/91‑1 (MQ=255) aaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTAt < 1:4870218/91‑1 (MQ=255) ggCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTg > 1:569979/1‑91 (MQ=255) ggCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTg > 1:6793896/1‑91 (MQ=255) ggCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTg > 1:5118241/1‑91 (MQ=255) gCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGc > 1:725337/1‑91 (MQ=255) gCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGc > 2:1013253/1‑91 (MQ=255) gCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGc < 2:57727/91‑1 (MQ=255) aaTACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATg > 2:2153038/1‑91 (MQ=255) tACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGaa > 1:688178/1‑91 (MQ=255) cAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAAtt < 2:6428082/91‑1 (MQ=255) gCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAg > 2:132907/1‑91 (MQ=255) gATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtg < 2:1979372/91‑1 (MQ=255) aTAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtgt < 1:34726/91‑1 (MQ=255) tAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg < 2:3228207/91‑1 (MQ=255) aGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGa < 1:6539303/91‑1 (MQ=255) aGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGa < 1:1658492/91‑1 (MQ=255) aGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGa < 2:4213859/91‑1 (MQ=255) ggaaGATACCTAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGACGGGTATTTCTTGCAATGAATTAGTGTGaa < 2:5559284/89‑1 (MQ=255) gCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGaa < 2:3735762/91‑1 (MQ=255) aaGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGt > 1:4999183/1‑91 (MQ=255) aaGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGt > 1:3612459/1‑91 (MQ=255) tACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAAt > 2:290791/1‑91 (MQ=255) ccAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgc < 2:5955899/91‑1 (MQ=255) aaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagc < 1:1196861/91‑1 (MQ=255) aaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagc > 2:5411789/1‑91 (MQ=255) aaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagc < 1:2391513/91‑1 (MQ=255) aaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagca > 1:1913061/1‑91 (MQ=255) aaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagca < 1:2990553/91‑1 (MQ=255) aTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCAt < 1:1746747/91‑1 (MQ=255) aaCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTa < 1:5990168/91‑1 (MQ=255) aaCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTa < 1:5045401/91‑1 (MQ=255) ACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTAt < 2:802562‑M1/91‑1 (MQ=255) ACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTAt > 1:219895‑M1/1‑91 (MQ=255) CCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATc > 1:4171407‑M1/1‑91 (MQ=255) CCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCAtcatca > 2:4440375‑M1/1‑91 (MQ=255) CCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTAtcc < 1:2716976‑M1/91‑2 (MQ=255) CCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCa < 1:6068378‑M1/91‑1 (MQ=255) CCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCa < 2:4610726‑M1/91‑1 (MQ=255) GCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAtt > 1:854783‑M1/1‑91 (MQ=255) CCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAttt > 2:380419‑M1/1‑91 (MQ=255) CCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTg < 1:3033224‑M1/91‑1 (MQ=255) CCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGaa < 1:3750837‑M1/91‑1 (MQ=255) tctAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCg > 2:3671461/1‑91 (MQ=255) cTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGt < 1:1593491/91‑1 (MQ=255) cTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGt < 1:6693070/91‑1 (MQ=255) ttAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTa > 1:907078/1‑91 (MQ=255) ttAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTa < 2:2731464/91‑1 (MQ=255) ttAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTa > 2:2258303/1‑91 (MQ=255) tAAAATGATAAGTATAGCTAGAgggggcgggttattttggtatcttgctatcgctgtattaagcctgatttttgcaattgttctaacatat < 2:3319856‑M2/91‑70 (MQ=255) tAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTAt > 2:3919733/1‑91 (MQ=255) aaaaTGATAAGTATAGCTAGAgggggcgggttattttggtatcttgctatcgctgtattaagcctgatttttgcaattgttctaacatatc < 1:5428991‑M2/91‑71 (MQ=255) aaTGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCtt < 2:3067569/91‑1 (MQ=255) aaTGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCtt > 2:3752152/1‑91 (MQ=255) gATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTAt < 1:1340950/91‑1 (MQ=255) gATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTAt > 2:4549692/1‑91 (MQ=255) aTAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATc > 2:3000588/1‑91 (MQ=255) aTAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATc > 2:2581588/1‑91 (MQ=255) aTAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATc < 2:1526333/91‑1 (MQ=255) aTAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATc > 2:6128121/1‑91 (MQ=255) tAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATcc > 1:5584209/1‑91 (MQ=255) tAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATcc < 1:521396/91‑1 (MQ=255) aaGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATccc < 2:233096/91‑1 (MQ=255) aaGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATccc < 2:4758313/91‑1 (MQ=255) gTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCaa > 2:6262966/1‑91 (MQ=255) taGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGt < 1:2153038/91‑1 (MQ=255) taGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGt < 2:6382115/91‑1 (MQ=255) aGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGtt > 1:25348/1‑91 (MQ=255) aGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTACTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGtt > 2:6745084/1‑91 (MQ=255) gCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGttt > 2:1638118/1‑91 (MQ=255) tAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAg < 1:4735802/91‑1 (MQ=255) tAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAg < 1:1030291/91‑1 (MQ=255) agagGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGt < 1:4775404/91‑1 (MQ=255) agagGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGt < 2:4059591/91‑1 (MQ=255) gagGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGtt > 2:3270981/1‑91 (MQ=255) gagGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGtt < 2:4999183/91‑1 (MQ=255) agGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTa > 2:5698072/1‑91 (MQ=255) | GAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTA > USA300TCH1516_ALE/431087‑431267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |