BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	441295 =	328 (0.920)	18 (0.060)	12/142	NT	6.3%	intergenic (+12/+101)	guaA/USA300HOU_RS02075	GMP synthase [glutamine‑hydrolyzing]/hypothetical protein
*	?	USA300TCH1516_ALE	441323 =	243 (0.770)	18 (0.060)	12/142	NT	6.3%	intergenic (+40/+73)	guaA/USA300HOU_RS02075	GMP synthase [glutamine‑hydrolyzing]/hypothetical protein

Only 100 of 370 total aligned reads displayed.

GTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCC  >  USA300TCH1516_ALE/441233‑441413

gTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGttttt                                                                                            <  2:1262909/91‑1 (MQ=255)

   gTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAAt                                                                                         >  1:1397039/1‑91 (MQ=255)

   gTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAAt                                                                                         <  1:4324874/91‑1 (MQ=255)

    tCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAAtt                                                                                        <  2:2127699/91‑1 (MQ=255)

    tCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAAtt                                                                                        <  2:339863/91‑1 (MQ=255)

    tCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAAtt                                                                                        <  2:2365578/91‑1 (MQ=255)

           cATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGagtag                                                                                 <  2:6710531/91‑1 (MQ=255)

             ttACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGtt                                                                               <  1:3587303/91‑1 (MQ=255)

             ttACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGtt                                                                               <  1:4220610/91‑1 (MQ=255)

              tACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTg                                                                              <  2:1970482/91‑1 (MQ=255)

               cttaccccttttccgtccttattgtaattttccaactactcaaattaaaagccacctgtttgcacgggtggttttTAATTTGAGTAGTTgg                                                                             <  1:796418‑M2/16‑1 (MQ=255)

               aCATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTgg                                                                             >  1:753712/1‑91 (MQ=255)

                cATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCTCCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGa                                                                            >  1:5784006/1‑91 (MQ=255)

                cATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGa                                                                            >  2:1018008/1‑91 (MQ=255)

                cATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGa                                                                            >  1:5065472/1‑91 (MQ=255)

                cATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGa                                                                            >  2:4651012/1‑91 (MQ=255)

                 aTCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGaa                                                                           <  2:4313332/91‑1 (MQ=255)

                 aTCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGaa                                                                           >  1:659685/1‑91 (MQ=255)

                  tCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGCGTAGTTGGaaa                                                                          >  2:3023859/1‑91 (MQ=255)

                      aaCCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTa                                                                      >  2:4221477/1‑91 (MQ=255)

                       gccaccaAGCACAATTGAGTGGGAATAATGATAGATAATAAAACCACCTGTTTGCACGGGTGGGGTTTAATTTGAGTAGTTGGAGAATTAc                                                                     <  2:4756621/90‑1 (MQ=255)

                          accaAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAAt                                                                  >  2:843706/1‑91 (MQ=255)

                           ccaAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATa                                                                 >  2:3496016/1‑91 (MQ=255)

                           ccaAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATa                                                                 <  2:6785500/91‑1 (MQ=255)

                           ccaAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATa                                                                 >  1:5665838/1‑91 (MQ=255)

                            caAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATaa                                                                >  2:5601102/1‑91 (MQ=255)

                            caAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATaa                                                                >  1:2786091/1‑91 (MQ=255)

                            caAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATaa                                                                >  1:5426489/1‑91 (MQ=255)

                            caAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATaa                                                                <  1:414237/91‑1 (MQ=255)

                             aaGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAg                                                               >  2:278991/1‑91 (MQ=255)

                             aaGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAg                                                               >  1:3536208/1‑91 (MQ=255)

                              atcacaATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAgg                                                              <  2:5536970/89‑1 (MQ=255)

                              aGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAgg                                                              <  1:3005343/91‑1 (MQ=255)

                              aGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAgg                                                              <  1:5140552/91‑1 (MQ=255)

                              aGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAgg                                                              <  1:4110851/91‑1 (MQ=255)

                               gCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGa                                                             <  2:2342894/91‑1 (MQ=255)

                                 acaATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACg                                                           >  2:3186724/1‑91 (MQ=255)

                                  caATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACgg                                                          <  1:1905066/91‑1 (MQ=255)

                                     ttGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGaaa                                                       >  1:2733262/1‑91 (MQ=255)

                                     ttGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGaaa                                                       <  2:6263947/91‑1 (MQ=255)

                                     ttGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGaaa                                                       >  2:410067/1‑91 (MQ=255)

                                     ttGAGTGGGAATAATGATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGaaa                                                       <  2:3860682/91‑1 (MQ=255)

                                        aGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAgg                                                    <  1:4421599/91‑1 (MQ=255)

                                        aGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAgg                                                    <  1:3101119/91‑1 (MQ=255)

                                          tGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAgggg                                                  <  1:1661517/91‑1 (MQ=255)

                                          tGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAgggg                                                  >  2:5962973/1‑91 (MQ=255)

                                           gggAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGt                                                 <  1:87158/91‑1 (MQ=255)

                                            ggAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTa                                                >  2:1762088/1‑91 (MQ=255)

                                            ggAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTa                                                >  2:1499103/1‑91 (MQ=255)

                                             gAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTaa                                               >  2:4933769/1‑91 (MQ=255)

                                              ccaactactcaaattaAAAACCACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAg                                              <  1:6766479‑M1/75‑1 (MQ=255)

                                              aataatTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAg                                              <  1:2409494/91‑1 (MQ=255)

                                              aataatTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAg                                              >  2:1581211/1‑91 (MQ=255)

                                               ataatTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAgg                                             >  1:1202656/1‑91 (MQ=255)

                                                  atTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGgtgt                                          <  2:5162125/91‑1 (MQ=255)

                                                  atTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGgtgt                                          <  1:4921549/91‑1 (MQ=255)

                                                  atTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGgtgt                                          >  1:6314469/1‑91 (MQ=255)

                                                   ttATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGtt                                         >  2:6159594/1‑91 (MQ=255)

                                                   ttATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGtt                                         >  2:2582731/1‑91 (MQ=255)

                                                     atatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCt                                       >  1:3704978/1‑91 (MQ=255)

                                                     atatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCt                                       >  2:2487462/1‑91 (MQ=255)

                                                     atatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCt                                       <  2:3159841/91‑1 (MQ=255)

                                                     atatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCt                                       <  2:1834287/91‑1 (MQ=255)

                                                      tatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTa                                      >  2:6518365/1‑91 (MQ=255)

                                                        tataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAg                                    >  1:2608568/1‑91 (MQ=255)

                                                        tataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAg                                    <  1:1567887/91‑1 (MQ=255)

                                                          taataaAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGtt                                  >  1:682867/1‑91 (MQ=255)

                                                           aataaAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGttt                                 <  1:1677/91‑1 (MQ=255)

                                                           aataaAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGttt                                 <  1:1501163/91‑1 (MQ=255)

                                                            ataaAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTg                                >  2:6340558/1‑91 (MQ=255)

                                                               AAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGt                             <  1:6114541‑M1/91‑1 (MQ=255)

                                                                AACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGtt                            >  1:4761012‑M1/1‑91 (MQ=255)

                                                                AACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGtt                            >  1:3210626‑M1/1‑91 (MQ=255)

                                                                 ACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGttt                           <  2:3966511‑M1/91‑1 (MQ=255)

                                                                  ccacccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGtttt                          >  1:2907422‑M2/25‑91 (MQ=255)

                                                                  CCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGtttt                          >  1:4597435‑M1/1‑91 (MQ=255)

                                                                   CACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTa                         >  2:412896‑M1/1‑91 (MQ=255)

                                                                    acccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTaa                        >  2:353894‑M2/23‑91 (MQ=255)

                                                                    acccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTaa                        >  2:5785576‑M2/23‑91 (MQ=255)

                                                                     CCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAAt                       <  1:2485948‑M1/91‑1 (MQ=255)

                                                                     CCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAAt                       <  2:3466920‑M1/91‑1 (MQ=255)

                                                                      CTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAAtt                      >  1:326041‑M1/1‑91 (MQ=255)

                                                                       tGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtc                     >  1:6018430/1‑91 (MQ=255)

                                                                       tGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtc                     >  1:1268007/1‑91 (MQ=255)

                                                                       tGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtc                     <  1:3430827/91‑1 (MQ=255)

                                                                        gtgtGCGCGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtca                    <  1:5841796/88‑1 (MQ=255)

                                                                        gTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACACTAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtca                    >  1:6373472/1‑91 (MQ=255)

                                                                         tttGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtcat                   >  1:5703608/1‑91 (MQ=255)

                                                                           ggCACGAGTAGTTTTTAATTGGAGTAGTAGAAAAATTACAATAAGGACGGAAAAGGTGTAAGGTGTTCTAAGTTTGCGTTATAATtcatca                 <  2:5831600/90‑1 (MQ=255)

                                                                           caaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATtcatca                 >  1:3982845‑M2/16‑91 (MQ=255)

                                                                            gCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCaa                <  1:1069401/91‑1 (MQ=255)

                                                                             cACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAAt               >  1:709379/1‑91 (MQ=255)

                                                                               cGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATaa             >  2:709209/1‑91 (MQ=255)

                                                                                 ggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTAGCGTTTTAATTCATCAATAAgg           <  2:5336981‑M2/82‑1 (MQ=255)

                                                                                  gtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGc          >  2:5482035‑M2/9‑91 (MQ=255)

                                                                                   tggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCa         <  1:3858406‑M2/84‑1 (MQ=255)

                                                                                   tggtttaTAATTTGAGTACTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCa         <  1:5863133‑M2/84‑1 (MQ=255)

                                                                                     gttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAAt       <  2:4839891‑M2/86‑1 (MQ=255)

                                                                                      ttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAAtt      >  2:4356100‑M2/5‑91 (MQ=255)

                                                                                          tAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAACAAGGCAATTTTcc  >  2:3736123/1‑91 (MQ=255)

GTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCC  >  USA300TCH1516_ALE/441233‑441413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.