BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	854380 =	329 (0.920)	21 (0.060)	13/148	NT	6.6%	intergenic (‑275/‑460)	USA300HOU_RS04170/zipA_1	Epimerase family protein/Cell division protein ZipA
*	?	USA300TCH1516_ALE	854405 =	295 (0.890)	21 (0.060)	13/148	NT	6.6%	intergenic (‑300/‑435)	USA300HOU_RS04170/zipA_1	Epimerase family protein/Cell division protein ZipA

Only 100 of 407 total aligned reads displayed.

TAAAAGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTA  >  USA300TCH1516_ALE/854315‑854495

tAAAAGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCg                                                                                            >  2:5096568/1‑91 (MQ=255)

  aaaGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGtt                                                                                          >  1:4111831/1‑91 (MQ=255)

    aGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGtttt                                                                                        <  1:4244946/91‑1 (MQ=255)

    aGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGtttt                                                                                        <  1:6578933/91‑1 (MQ=255)

    aGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGAAGTGGACCCGTACG‑TTAATCGTGCGGGTCGtttt                                                                                        <  2:4137819/91‑1 (MQ=255)

     gTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGttttt                                                                                       >  2:3441029/1‑91 (MQ=255)

     gTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGttttt                                                                                       <  2:3059763/91‑1 (MQ=255)

      ttgtttaaaaaattaatgctttaaattgatgtataatgggaataagaaataaataaaaacgacccgtacgttaatcgtgcgggtcGttttt                                                                                       <  1:2049258‑M2/6‑1 (MQ=255)

       aTGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttat                                                                                     >  1:3092420/1‑91 (MQ=255)

        tgtgTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttatt                                                                                    >  1:3264380/1‑91 (MQ=255)

         gtgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattt                                                                                   >  2:811727/1‑91 (MQ=255)

         gtgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattt                                                                                   >  1:3002981/1‑91 (MQ=255)

          tgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattta                                                                                  >  2:2977375/1‑91 (MQ=255)

            tAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTtatttatt                                                                                >  2:2377044/1‑91 (MQ=255)

            tAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTtatttatt                                                                                >  2:1788833/1‑91 (MQ=255)

            tAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTtatttatt                                                                                <  1:132678/91‑1 (MQ=255)

            tAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTtatttatt                                                                                <  2:3623349/91‑1 (MQ=255)

            aaaaaattaatgctttaaattgatgtataatgggaataagaaataaataaaaacgacccgtacgttaatcgtgcgggtcGTTTttatttat                                                                                 <  1:5618460‑M2/12‑1 (MQ=255)

              aaaCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTc                                                                              >  1:2302978/1‑91 (MQ=255)

               aaCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCt                                                                             <  2:3115997/91‑1 (MQ=255)

               aaCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCt                                                                             <  2:1582336/91‑1 (MQ=255)

                aCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCtt                                                                            <  1:66902/91‑1 (MQ=255)

                 cGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTa                                                                           <  2:3935209/91‑1 (MQ=255)

                  gCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTAt                                                                          <  1:1101841/91‑1 (MQ=255)

                   cTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTAtt                                                                         <  2:6521267/91‑1 (MQ=255)

                    tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        >  2:1428168/1‑91 (MQ=255)

                    tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        <  2:4582601/91‑1 (MQ=255)

                    tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        <  1:4372497/91‑1 (MQ=255)

                     gCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTACTcc                                                                       >  1:6502025/1‑91 (MQ=255)

                       aTGATACAAACGAAGGTACAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCa                                                                     >  2:3365490/1‑91 (MQ=255)

                       aTGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCa                                                                     >  2:4309696/1‑91 (MQ=255)

                       aTGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCa                                                                     >  1:3700961/1‑91 (MQ=255)

                       aTGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCa                                                                     >  1:355318/1‑91 (MQ=255)

                          aTACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATta                                                                  <  1:3816065/91‑1 (MQ=255)

                          aTACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATta                                                                  <  2:6063294/91‑1 (MQ=255)

                           tACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATtat                                                                 >  1:2541665/1‑91 (MQ=255)

                              aaaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACa                                                              <  2:2154809/91‑1 (MQ=255)

                               aaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACAt                                                             >  2:4179311/1‑91 (MQ=255)

                               aaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACAt                                                             <  2:6558599/91‑1 (MQ=255)

                                  gAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCaa                                                          <  1:5310158/91‑1 (MQ=255)

                                   aaGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAAt                                                         <  2:6820477/91‑1 (MQ=255)

                                     ggTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAAttt                                                       >  1:2587673/1‑91 (MQ=255)

                                      gTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTa                                                      <  2:5380439/91‑1 (MQ=255)

                                      gTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTa                                                      >  1:2833834/1‑91 (MQ=255)

                                       tAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTaa                                                     <  2:4378115/91‑1 (MQ=255)

                                        aaaaaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTaaa                                                    >  2:2635690/1‑91 (MQ=255)

                                         aaaaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAg                                                   <  2:5042386/91‑1 (MQ=255)

                                          aaaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGc                                                  <  2:885432/91‑1 (MQ=255)

                                          aaaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGc                                                  <  1:6079375/91‑1 (MQ=255)

                                           aaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCa                                                 >  2:1527712/1‑91 (MQ=255)

                                            aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  1:4146337/91‑1 (MQ=255)

                                            aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  2:5575460/91‑1 (MQ=255)

                                             tttGACTCCCTTTAGTAGTGTACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAtt                                               <  2:6319286/91‑1 (MQ=255)

                                               tGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTaa                                             <  1:6120073/91‑1 (MQ=255)

                                                 aCTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTttatttat                                                                                 <  2:288080/53‑1 (MQ=255)

                                                 aCTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAtt                                           >  2:4831933/1‑91 (MQ=255)

                                                  cTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAttt                                          <  2:3236050/91‑1 (MQ=255)

                                                   tCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAtttt                                         >  1:5508646/1‑91 (MQ=255)

                                                    cccTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAttttt                                        >  2:2701274/1‑91 (MQ=255)

                                                    cccTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAttttt                                        >  1:2190852/1‑91 (MQ=255)

                                                     ccTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAtttttt                                       <  1:5098942/91‑1 (MQ=255)

                                                      taaataaaaacGACCCGCACGATTAA‑CGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTa                                      <  2:6014583‑M1/80‑1 (MQ=255)

                                                      cTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTa                                      >  1:4580542/1‑91 (MQ=255)

                                                        ttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaaa                                    <  2:1997695/91‑1 (MQ=255)

                                                        ttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaaa                                    <  1:6986024/91‑1 (MQ=255)

                                                         tagtagTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTAATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAAc                                   <  2:4694967/91‑1 (MQ=255)

                                                          agtagtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACa                                  <  2:374094/91‑1 (MQ=255)

                                                           gtagtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACaa                                 <  1:4626452/91‑1 (MQ=255)

                                                              gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaa                                     >  1:6883261/1‑84 (MQ=255)

                                                              gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAtt                              >  1:1589281/1‑91 (MQ=255)

                                                              gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAtt                              <  2:3801934/91‑1 (MQ=255)

                                                              gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATATAAAGCATTAATTTTTTAAACAAAtt                              >  2:6881372/1‑91 (MQ=255)

                                                              gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTACCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAtt                              >  2:5933870/1‑91 (MQ=255)

                                                               tGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAttt                             >  2:581715/1‑91 (MQ=255)

                                                                ggACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTa                            >  1:169698/1‑91 (MQ=255)

                                                                   CCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGa                         <  2:2441805‑M1/91‑1 (MQ=255)

                                                                    CCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGaa                        <  2:4974870‑M1/91‑1 (MQ=255)

                                                                     CGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAAt                       <  2:6664765‑M1/91‑1 (MQ=255)

                                                                      GTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATa                      <  1:1760342‑M1/91‑1 (MQ=255)

                                                                       tACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     >  2:111168/1‑91 (MQ=255)

                                                                       tACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     <  1:868782/91‑1 (MQ=255)

                                                                       tACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     <  1:5733544/91‑1 (MQ=255)

                                                                        cacgattaacgtacgggtcGTTTTTATTTATTTCTTATTCCCAGTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     >  1:5454679‑M2/20‑91 (MQ=255)

                                                                         cG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACAt                   >  1:1043574/1‑91 (MQ=255)

                                                                          g‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATa                  <  1:4834835/91‑1 (MQ=255)

                                                                          cgattaacgtacgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACAt                   >  1:6328578‑M2/18‑91 (MQ=255)

                                                                           gattaacgtacgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATa                  >  1:1282685‑M2/17‑91 (MQ=255)

                                                                             tAATCGTGCTGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGt                <  2:739502/91‑1 (MQ=255)

                                                                             tAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGt                <  2:4475745/91‑1 (MQ=255)

                                                                             tAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGt                <  1:1072391/91‑1 (MQ=255)

                                                                              aaTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTa               >  2:4241994/1‑91 (MQ=255)

                                                                              aaTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTa               >  1:2379503/1‑91 (MQ=255)

                                                                               aTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTaa              <  2:643436/91‑1 (MQ=255)

                                                                               aTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTaa              <  1:2441805/91‑1 (MQ=255)

                                                                                tCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAat             >  1:5941452/1‑91 (MQ=255)

                                                                                 cGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAata            >  2:5210626/1‑91 (MQ=255)

                                                                                 cGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAata            <  1:6420929/91‑1 (MQ=255)

                                                                                    gCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATaa         >  1:4757804/1‑91 (MQ=255)

                                                                                    gCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATaa         <  1:3456268/91‑1 (MQ=255)

                                                                                     cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAAc        <  1:5221945‑M2/85‑1 (MQ=255)

TAAAAGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTA  >  USA300TCH1516_ALE/854315‑854495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.