BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1058102 =	262 (0.730)	18 (0.060)	12/144	NT	6.9%	intergenic (+143/+64)	slyA_2/atl_1	Transcriptional regulator SlyA/Bifunctional autolysin
*	?	USA300TCH1516_ALE	1058152 =	250 (0.780)	18 (0.060)	12/144	NT	6.9%	intergenic (+193/+14)	slyA_2/atl_1	Transcriptional regulator SlyA/Bifunctional autolysin

Only 100 of 365 total aligned reads displayed.

AACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCAT  >  USA300TCH1516_ALE/1058062‑1058242

aaCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCt                                                                                            >  2:6253967/1‑91 (MQ=255)

aaCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCt                                                                                            <  1:2957225/91‑1 (MQ=255)

  aaaTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTAt                                                                                          >  2:6106546/2‑91 (MQ=255)

   aaTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATg                                                                                         >  2:3663113/1‑91 (MQ=255)

   aaTCACCGCTATTTTTGCTCGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATg                                                                                         <  1:5377192/91‑1 (MQ=255)

    attaCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGt                                                                                        <  2:4584903/88‑1 (MQ=255)

    aTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGt                                                                                        <  2:3128092/91‑1 (MQ=255)

    aTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGt                                                                                        <  2:2324694/91‑1 (MQ=255)

      cACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTc                                                                                      >  1:1749068/1‑91 (MQ=255)

       aCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCa                                                                                     >  2:634135/1‑91 (MQ=255)

       aCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCa                                                                                     >  1:928977/1‑91 (MQ=255)

          gCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGt                                                                                  <  2:1324243/91‑1 (MQ=255)

           cTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGtt                                                                                 <  1:3287195/91‑1 (MQ=255)

             aTTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGc                                                                               <  2:5719385/91‑1 (MQ=255)

             aTTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGc                                                                               <  1:4447913/91‑1 (MQ=255)

               ttttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCtt                                                                             <  1:1918786/91‑1 (MQ=255)

                tttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCtta                                                                            >  2:5368890/1‑91 (MQ=255)

                 ttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttat                                                                           <  1:6617893/91‑1 (MQ=255)

                  tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                                                                          <  1:4144510/91‑1 (MQ=255)

                   gCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattt                                                                         >  1:3052489/1‑91 (MQ=255)

                   gCTTGTGTATGGATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattt                                                                         <  2:4248786/91‑1 (MQ=255)

                     ttGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatttat                                                                       >  1:234211/1‑91 (MQ=255)

                       gtgtATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTatat                                                                     >  1:2833022/1‑91 (MQ=255)

                        tgtatgtaTAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATAtt                                                                    <  2:2586169/91‑1 (MQ=255)

                        tgtatgtaTAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATAtt                                                                    <  1:1826644/91‑1 (MQ=255)

                            tgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTgg                                                                <  1:369720/91‑1 (MQ=255)

                            tgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTgg                                                                >  2:764655/1‑91 (MQ=255)

                              tataAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGa                                                              <  2:4886376/91‑1 (MQ=255)

                                 aaaaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGt                                                           >  2:5025435/1‑91 (MQ=255)

                                  aaaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTc                                                          >  1:4237489/1‑91 (MQ=255)

                                  aaaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTc                                                          <  2:1384984/91‑1 (MQ=255)

                                  aaaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTc                                                          >  1:495944/1‑91 (MQ=255)

                                    aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa                                                        <  1:3846767/91‑1 (MQ=255)

                                    aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa                                                        >  2:2914853/1‑91 (MQ=255)

                                    aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACATTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa                                                        <  2:6789087/91‑1 (MQ=255)

                                     aaGGGATCAAAGGTGATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCAAGTTGCTTATTTATATTGTGTGATGTCGaa                                                       <  1:6426394/91‑1 (MQ=255)

                                      aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGCTGTCGAAg                                                      >  2:6936666/1‑91 (MQ=255)

                                      aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAg                                                      >  2:4003050/1‑91 (MQ=255)

                                      aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAg                                                      >  2:4660960/1‑91 (MQ=255)

                                       gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt                                                     <  2:127130/91‑1 (MQ=255)

                                       gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt                                                     >  2:1919104/1‑91 (MQ=255)

                                       gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt                                                     >  1:6095107/1‑91 (MQ=255)

                                       gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt                                                     >  1:3469422/1‑91 (MQ=255)

                                       gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCCAAGt                                                     >  2:3521304/1‑91 (MQ=255)

                                        GGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa                                                    <  2:6579969‑M1/91‑1 (MQ=255)

                                        GGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa                                                    <  1:1368286‑M1/91‑1 (MQ=255)

                                        GGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa                                                    <  1:3299890‑M1/91‑1 (MQ=255)

                                         GATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAt                                                   <  2:4337058‑M1/91‑1 (MQ=255)

                                          ATCAAAGGTCATCCCCCCTGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAtt                                                  <  2:5451936‑M1/91‑1 (MQ=255)

                                           TCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAttt                                                 >  2:4438871‑M1/1‑91 (MQ=255)

                                           TCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAttt                                                 <  2:3787118‑M1/91‑1 (MQ=255)

                                           TCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAttt                                                 <  2:1559709‑M1/91‑1 (MQ=255)

                                            CAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTg                                                <  1:5086226‑M1/91‑1 (MQ=255)

                                                 gTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGAc                                           >  1:2624697/1‑91 (MQ=255)

                                                  tCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACt                                          >  1:4367910/1‑91 (MQ=255)

                                                  tCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACt                                          >  1:5250934/1‑91 (MQ=255)

                                                   catcccccactatcaatcatgggggatgacttttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACtt                                         >  2:2142304‑M2/40‑91 (MQ=255)

                                                    aTCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTc                                        <  1:4660960/91‑1 (MQ=255)

                                                     tcccccactatcaatcatgggggataacctttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGACGTATTTGCTGACTTCg                                       >  2:6657458‑M2/38‑91 (MQ=255)

                                                     tCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCg                                       >  1:1579436/1‑91 (MQ=255)

                                                       ccccATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGcc                                     <  2:1811763/91‑1 (MQ=255)

                                                        cccactatcaatcatgggggatgacttttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCa                                    >  1:2021318‑M2/35‑91 (MQ=255)

                                                          cATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAt                                  <  2:1065992/91‑1 (MQ=255)

                                                             tatcaatcataggggatgacctttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAtttt                               >  2:5832109‑M2/30‑91 (MQ=255)

                                                               ttgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTAt                             <  2:4078507/91‑1 (MQ=255)

                                                                tgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCATTTTTATc                            <  2:410439/91‑1 (MQ=255)

                                                                 gatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCa                           >  1:4743087/1‑91 (MQ=255)

                                                                 gatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCa                           >  2:1608883/1‑91 (MQ=255)

                                                                 gatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCa                           <  1:1420984/91‑1 (MQ=255)

                                                                  atAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAt                          >  1:2516072/1‑91 (MQ=255)

                                                                  atAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAt                          >  1:3678824/1‑91 (MQ=255)

                                                                    aGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtag                        <  1:6572849/91‑1 (MQ=255)

                                                                    aGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtag                        >  2:514272/1‑91 (MQ=255)

                                                                     gTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt                       <  1:3175780/91‑1 (MQ=255)

                                                                     gTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt                       <  1:5933612/91‑1 (MQ=255)

                                                                     gTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt                       <  1:4013707/91‑1 (MQ=255)

                                                                     gTGGGGGATGACTATTGATCCTATGTTCATCTTGCTTATTTATAGTGTAGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt                       >  1:5560332/1‑91 (MQ=255)

                                                                      tgggggatgacctttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagta                      <  1:2102885‑M2/71‑1 (MQ=255)

                                                                       gggggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagtag                     >  1:6245197/1‑91 (MQ=255)

                                                                        ggggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGc                    >  1:1068674/1‑91 (MQ=255)

                                                                        ggggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGc                    <  2:4758584/91‑1 (MQ=255)

                                                                         gggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGcc                   <  2:5300655/91‑1 (MQ=255)

                                                                         gggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGcc                   <  1:577727/91‑1 (MQ=255)

                                                                          ggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCt                  <  2:5496989/91‑1 (MQ=255)

                                                                          ggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCt                  <  2:2728665/91‑1 (MQ=255)

                                                                           gATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCtt                 <  2:2467833/91‑1 (MQ=255)

                                                                            aTGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCttt                <  2:3400222/91‑1 (MQ=255)

                                                                               aCTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgat             >  1:6999185/1‑91 (MQ=255)

                                                                               aCTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgat             >  2:326840/1‑91 (MQ=255)

                                                                               aCTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGAAGCCTTtgat             >  2:5570380/1‑91 (MQ=255)

                                                                                 ttttGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgatga           <  2:2803949/91‑1 (MQ=255)

                                                                                  tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTgatgat          <  2:3004506‑M2/83‑1 (MQ=255)

                                                                                  tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTgatgat          >  2:6161498‑M2/9‑91 (MQ=255)

                                                                                    tgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAttt        >  2:903232‑M2/7‑91 (MQ=255)

                                                                                     gatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAtttt       <  1:6045146‑M2/86‑1 (MQ=255)

                                                                                      atccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTa      >  1:84162‑M2/5‑91 (MQ=255)

                                                                                      atccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTa      <  1:6668336‑M2/87‑1 (MQ=255)

                                                                                      atccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTa      <  1:1220965‑M2/87‑1 (MQ=255)

                                                                                         cTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCa   <  2:6456631‑M2/90‑1 (MQ=255)

                                                                                          tATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCAt  <  2:1948448/91‑1 (MQ=255)

AACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCAT  >  USA300TCH1516_ALE/1058062‑1058242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.