New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1205029 =279 (0.780)14 (0.040) 6/148 NT 5.2% coding (91/195 nt) USA300HOU_RS15290 hypothetical protein
?USA300TCH1516_ALE = 1427013 NA (NA)intergenic (‑744/+228) pstS/cvfB Phosphate‑binding protein PstS/Conserved virulence factor B

Only 100 of 126 total aligned reads displayed.

CTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCT  >  USA300TCH1516_ALE/1426974‑1427103
                                       |                                                                                          
cTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTcc                                         >  2:1503854/1‑91 (MQ=31)
cTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTcc                                         >  2:274801/1‑91 (MQ=31)
cTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTcc                                         >  2:274988/1‑91 (MQ=31)
cTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTcc                                         >  1:3181374/1‑91 (MQ=31)
 tAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCa                                        >  2:799510/1‑91 (MQ=32)
 tAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCa                                        <  2:3235417/91‑1 (MQ=32)
  aGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCAt                                       <  1:1559953/91‑1 (MQ=33)
   ggTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGTTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATc                                      <  2:4712659/91‑1 (MQ=21)
   ggTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATc                                      >  1:1033831/1‑91 (MQ=34)
   ggTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATc                                      >  1:4800570/1‑91 (MQ=34)
   ggTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATc                                      <  2:5635924/91‑1 (MQ=34)
    gTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCa                                     >  1:1299833/1‑91 (MQ=34)
    gTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCa                                     <  2:1393552/91‑1 (MQ=34)
    gTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCa                                     >  2:4537727/1‑91 (MQ=34)
     ttttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAGGCTGATTTCCATCaa                                    <  2:6026041/91‑1 (MQ=18)
     ttttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCaa                                    >  2:1848700/1‑91 (MQ=34)
      tttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCaaa                                   <  1:2400561/91‑1 (MQ=34)
      tttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCaaa                                   <  1:2712713/91‑1 (MQ=34)
      tttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCaaa                                   <  1:2713741/91‑1 (MQ=34)
      tttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCaaa                                   <  1:1890245/91‑1 (MQ=33)
       ttGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaat                                  >  1:1532720/1‑91 (MQ=34)
        tGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaata                                 <  2:661760/91‑1 (MQ=33)
         gTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaataa                                >  2:3289289/1‑91 (MQ=33)
         gTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaataa                                >  2:5096911/1‑91 (MQ=34)
         gTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaataa                                <  2:2147011/91‑1 (MQ=34)
          tATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTGCATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaataat                               <  2:4604103/91‑1 (MQ=21)
          tATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAaataat                               >  1:2794374/1‑91 (MQ=33)
           aTTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAAtaatt                              <  1:1945770/91‑1 (MQ=34)
           aTTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAAtaatt                              <  2:3668381/91‑1 (MQ=34)
              aaTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAAtaattaat                           >  2:3294881/1‑91 (MQ=34)
              aaTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAAtaattaat                           <  2:1806297/91‑1 (MQ=33)
              aaTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAAtaattaat                           <  1:1329090/91‑1 (MQ=34)
              aaTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCAACAAAtaattaat                           >  2:4512069/1‑91 (MQ=21)
               aTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATa                          >  1:6997058/1‑91 (MQ=34)
               aTGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATa                          <  1:4971155/91‑1 (MQ=34)
                tGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAg                         >  2:5241142/1‑91 (MQ=34)
                tGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAg                         >  1:6670018/1‑91 (MQ=34)
                 ggCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGa                        <  2:4058859/91‑1 (MQ=34)
                  gCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGaa                       <  1:1507120/91‑1 (MQ=34)
                  gCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGaa                       <  1:4211524/91‑1 (MQ=34)
                   cACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGaaa                      >  2:4059129/1‑91 (MQ=33)
                    aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAAt                     >  1:6360400/1‑91 (MQ=34)
                    aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAAt                     >  1:1727278/1‑91 (MQ=34)
                    aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAAt                     <  1:468035/91‑1 (MQ=34)
                    aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAAt                     <  1:3496167/91‑1 (MQ=34)
                    aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAAt                     <  2:4443971/91‑1 (MQ=34)
                     cTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATc                    <  2:4072793/91‑1 (MQ=34)
                     cTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATc                    >  2:3107255/1‑91 (MQ=33)
                      ttAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCa                   <  2:4885089/91‑1 (MQ=34)
                       tAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAATAGCTGATTTCCATCAAATAATTAATAGAAATCAg                  <  2:4165231/91‑1 (MQ=21)
                       tAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAg                  <  2:4660594/91‑1 (MQ=34)
                        aaTATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGc                 >  1:2169966/1‑91 (MQ=34)
                        aaTATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGc                 <  1:4291171/91‑1 (MQ=34)
                         atatAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCt                <  2:4943719/91‑1 (MQ=34)
                         atatAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCt                >  1:3564064/1‑91 (MQ=34)
                         atatAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCt                >  2:4079851/1‑91 (MQ=34)
                         atatAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCt                <  2:4943134/91‑1 (MQ=34)
                          tctaAGGAAAATAGCATCTCAACGACCTTTACATTATAAAATACATATCAAAAAAGCGGCTTTCCATCAAATAATTAATAGAAATGAGCtt               >  2:6824978/3‑91 (MQ=11)
                          tataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtt               <  1:6365014/91‑1 (MQ=34)
                          tataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtt               >  2:4213183/1‑91 (MQ=33)
                           ataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttt              <  2:4764898/91‑1 (MQ=34)
                           ataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttt              <  1:4843944/91‑1 (MQ=34)
                           ataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttt              >  2:2767918/1‑91 (MQ=34)
                           ataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttt              <  2:326201/91‑1 (MQ=34)
                            taAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             <  1:5900857/91‑1 (MQ=34)
                            taAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             >  2:2854966/1‑91 (MQ=34)
                            taAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             >  2:3207043/1‑91 (MQ=34)
                            taAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             <  2:3875635/91‑1 (MQ=33)
                            taAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             <  1:2472866/91‑1 (MQ=34)
                            aaaGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttt             <  2:588006/90‑1 (MQ=21)
                             aaGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttttt            <  2:4029496/91‑1 (MQ=34)
                             aaGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttttt            <  1:3718799/91‑1 (MQ=33)
                             aaGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCttttt            >  2:3600771/1‑91 (MQ=34)
                              aGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttttt           >  1:249034/1‑91 (MQ=33)
                              aGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCtttttt           >  2:5041447/1‑91 (MQ=34)
                                gAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTAc         <  2:2090428/91‑1 (MQ=34)
                                gAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTAc         >  1:195321/1‑91 (MQ=34)
                                gAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTAc         >  1:6648593/1‑91 (MQ=33)
                                 aaaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACa        <  2:5222763/91‑1 (MQ=34)
                                  aaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAt       <  1:1415472/91‑1 (MQ=34)
                                  aaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAt       <  2:5180051/91‑1 (MQ=34)
                                  aaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAt       <  2:6246236/91‑1 (MQ=34)
                                  aaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAt       <  1:5203805/91‑1 (MQ=34)
                                   aaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAtt      <  2:881750/91‑1 (MQ=34)
                                   aaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAtt      <  2:6959873/91‑1 (MQ=34)
                                   aaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAtt      <  2:5168703/91‑1 (MQ=34)
                                   aaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACAtt      <  2:5168501/91‑1 (MQ=34)
                                    aTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTg     >  1:4290544/1‑91 (MQ=34)
                                     tAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGc    <  1:2616694/91‑1 (MQ=34)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   >  2:2526227/1‑91 (MQ=34)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   >  1:5794404/1‑91 (MQ=33)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   <  1:2194918/91‑1 (MQ=34)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   <  1:2194520/91‑1 (MQ=34)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   <  1:2193500/91‑1 (MQ=33)
                                      agcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGcc   <  1:1241361/91‑1 (MQ=34)
                                       gcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt  >  1:6896774/1‑91 (MQ=34)
                                       gcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt  <  2:6528469/91‑1 (MQ=34)
                                       gcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt  <  2:6648593/91‑1 (MQ=34)
                                       gcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTGTTTACATTGCCt  >  2:4488017/1‑91 (MQ=21)
                                       gcagcTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTAATTTCCATCAAATAATTAGTAGCAATAAGCTTTTTTACATTGCCt  >  2:6873063/1‑91 (MQ=11)
                                       |                                                                                          
CTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCCATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCT  >  USA300TCH1516_ALE/1426974‑1427103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.