BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1430185 =	323 (0.900)	15 (0.050)	9/140	NT	5.6%	intergenic (+294/‑566)	ybiT/lysC	putative ABC transporter ATP‑binding protein YbiT/Aspartokinase
*	?	USA300TCH1516_ALE	1430212 =	228 (0.730)	15 (0.050)	9/140	NT	5.6%	intergenic (+321/‑539)	ybiT/lysC	putative ABC transporter ATP‑binding protein YbiT/Aspartokinase

Only 100 of 373 total aligned reads displayed.

AGGGCCTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAAGAGTA  >  USA300TCH1516_ALE/1430122‑1430302

 gggCCTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGgt                                                                                           >  2:398776/1‑91 (MQ=255)

   gCCTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGgtgt                                                                                         <  2:2497303/91‑1 (MQ=255)

    ccTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTc                                                                                        >  1:611617/1‑91 (MQ=255)

     cTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTcc                                                                                       <  1:1031384/91‑1 (MQ=255)

      tAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCt                                                                                      >  2:6025410/1‑91 (MQ=255)

         ggCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCtttt                                                                                   >  2:6456809/1‑91 (MQ=255)

         ggCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCtttt                                                                                   >  2:4662455/1‑91 (MQ=255)

         ggCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCtttt                                                                                   <  2:1622494/91‑1 (MQ=255)

         ggCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCtttt                                                                                   >  1:4111284/1‑91 (MQ=255)

            aTTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttat                                                                                <  2:332593/91‑1 (MQ=255)

            aTTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttat                                                                                <  1:5941581/91‑1 (MQ=255)

            aTTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttat                                                                                >  1:5831497/1‑91 (MQ=255)

             ttGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttatt                                                                               <  1:912969/91‑1 (MQ=255)

             ttGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttatt                                                                               <  2:2100810/91‑1 (MQ=255)

             ttGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttatt                                                                               <  1:1413799/91‑1 (MQ=255)

               gATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttatttt                                                                             <  1:4485782/91‑1 (MQ=255)

                aTTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTttttatttta                                                                            >  1:5903760/1‑91 (MQ=255)

                  tCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTttattttatt                                                                          >  2:1872326/1‑91 (MQ=255)

                     tGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTAttttt                                                                       >  1:1824183/1‑91 (MQ=255)

                      gTCCGAGACTATATTCAATTTAATAGACATTAAATGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTAtttttt                                                                      >  1:6950000/1‑91 (MQ=255)

                        ccGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTaa                                                                    >  1:3191103/1‑91 (MQ=255)

                         cGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTG‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTAtttttttat                                                                   >  2:5081411/1‑88 (MQ=255)

                         cGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAac                                                                   >  1:3579075/1‑91 (MQ=255)

                         cGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAac                                                                   <  1:6025410/91‑1 (MQ=255)

                         cGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAac                                                                   >  2:2362939/1‑91 (MQ=255)

                         cGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAac                                                                   >  1:399189/1‑91 (MQ=255)

                          gagaCTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAaca                                                                  >  1:2289295/1‑91 (MQ=255)

                           agaCTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAacac                                                                 >  2:2225191/1‑91 (MQ=255)

                           agaCTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAacac                                                                 <  2:5188492/91‑1 (MQ=255)

                            gaCTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAAcaca                                                                <  1:796250/91‑1 (MQ=255)

                             aCTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACAt                                                               <  1:3171866/91‑1 (MQ=255)

                                atatTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAg                                                            >  1:3046417/1‑91 (MQ=255)

                                atatTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAg                                                            >  2:6707152/1‑91 (MQ=255)

                                 tatTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGc                                                           <  2:3411073/91‑1 (MQ=255)

                                 tatTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGc                                                           >  1:4317139/1‑91 (MQ=255)

                                   ttCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCAt                                                         <  1:3620717/91‑1 (MQ=255)

                                   ttCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCAt                                                         >  2:1179880/1‑91 (MQ=255)

                                     cAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAg                                                       <  2:1809894/91‑1 (MQ=255)

                                     cAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAg                                                       >  1:2808100/1‑91 (MQ=255)

                                      aaTTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGt                                                      <  1:206989/91‑1 (MQ=255)

                                            aTAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAacac                                                <  1:2362939/91‑1 (MQ=255)

                                            aTAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATACTCAacac                                                >  2:5520393/1‑91 (MQ=255)

                                             tAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATTGTGTACAcc                                               >  2:5421132/1‑91 (MQ=255)

                                               gACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACAcccc                                             >  1:1916848/1‑91 (MQ=255)

                                               gACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACAcccc                                             >  2:6370101/1‑91 (MQ=255)

                                               gACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACAcccc                                             <  1:6255299/91‑1 (MQ=255)

                                                aaataaaaaggacacCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            >  1:2353969‑M1/16‑91 (MQ=255)

                                                aCATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            <  2:1749998/91‑1 (MQ=255)

                                                aCATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            >  2:2697093/1‑91 (MQ=255)

                                                aCATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            <  1:1762490/91‑1 (MQ=255)

                                                aCATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            >  1:4984044/1‑91 (MQ=255)

                                                aCATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCt                                            <  1:5318702/91‑1 (MQ=255)

                                                 cATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTTTTTTATTTTTTAATACATCAGAATAGTGAACACCCCtt                                           >  1:2236168/1‑91 (MQ=255)

                                                 cATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCtt                                           <  1:2875361/91‑1 (MQ=255)

                                                    tAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTtctc                                        >  2:2163863/1‑91 (MQ=255)

                                                      aaaggacacCTCGATGCTATAAATAT‑TAGCATCGAGGTGTCCTTTTTATTTTATTTTTTCACACATCAGCATAGTGAACACCCCTTCGCTa                                      <  1:6494633‑M1/82‑1 (MQ=255)

                                                      aCTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTa                                      <  2:3489759/91‑1 (MQ=255)

                                                       cTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTaa                                     >  1:1511218/1‑91 (MQ=255)

                                                       cTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTaa                                     >  1:6640141/1‑91 (MQ=255)

                                                         gggCGTCTCGAAGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTaatt                                   >  2:6942621/1‑89 (MQ=255)

                                                          ggCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAAtt                                  <  1:5477836/91‑1 (MQ=255)

                                                          ggCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAAtt                                  <  1:125097/91‑1 (MQ=255)

                                                          ggCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAAtt                                  >  1:3431474/1‑91 (MQ=255)

                                                           gCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTa                                 >  2:4174103/1‑91 (MQ=255)

                                                            cGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTAc                                >  2:4586765/1‑91 (MQ=255)

                                                            cGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTAc                                <  2:4737852/91‑1 (MQ=255)

                                                              tctcGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACaa                              >  2:3651901/1‑91 (MQ=255)

                                                               CTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACaaa                             >  2:4846405‑M1/1‑91 (MQ=255)

                                                               CTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACaaa                             >  1:2697093‑M1/1‑91 (MQ=255)

                                                               CTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAACTACaaa                             <  1:5850699‑M1/91‑1 (MQ=255)

                                                                  GATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATAc                          >  2:1027203‑M1/1‑91 (MQ=255)

                                                                   ATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACa                         >  2:2011873‑M1/1‑91 (MQ=255)

                                                                     tgctataaatattagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAg                        >  1:2541804‑M2/23‑91 (MQ=255)

                                                                      CTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGtt                      <  1:159647‑M1/91‑1 (MQ=255)

                                                                      CTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGtt                      <  1:5727538‑M1/91‑1 (MQ=255)

                                                                         ataaatattagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTAt                    >  2:4396306‑M2/19‑91 (MQ=255)

                                                                         ataaatattagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTAt                    >  1:781017‑M2/19‑91 (MQ=255)

                                                                          atatTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATc                   <  1:3736261/91‑1 (MQ=255)

                                                                           tatTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCa                  <  2:6262978/91‑1 (MQ=255)

                                                                            atTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAAAACCCCTTCTCTAAATTACAAATACAGTTATCaa                 >  1:4405080/1‑91 (MQ=255)

                                                                            atTTATAGCATCGAGGTGTCCTTTCTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCaa                 >  1:6762084/1‑91 (MQ=255)

                                                                             ttttTATCATCGAGTAGTCCTTGTTAGTTTATTTGTTAACACATCATCATAGTGAACACCCATTCTCTCAATTACAAATACAGTTATGAAc                <  2:4234076/91‑1 (MQ=255)

                                                                             tttATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAAc                <  2:3041528/91‑1 (MQ=255)

                                                                             tttATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAAc                <  2:6321365/91‑1 (MQ=255)

                                                                              ttATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACg               >  2:2932753/1‑91 (MQ=255)

                                                                               tataGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGc              <  2:5461518/91‑1 (MQ=255)

                                                                               tataGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGc              <  2:4317139/91‑1 (MQ=255)

                                                                                 tagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCAt            <  2:1455473‑M2/81‑1 (MQ=255)

                                                                                 tagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCAt            >  1:3789066‑M2/11‑91 (MQ=255)

                                                                                 tagcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCAt            <  2:835431‑M2/81‑1 (MQ=255)

                                                                                   gcatcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTa          <  2:611617‑M2/83‑1 (MQ=255)

                                                                                     atcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTaaa        <  1:457804‑M2/85‑1 (MQ=255)

                                                                                     atcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTaaa        >  2:6144327‑M2/7‑91 (MQ=255)

                                                                                      tcgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAGATTACAAATACAGTTATCAACGCATTacaa       >  2:6919593‑M2/6‑91 (MQ=255)

                                                                                       cgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAag      >  2:2625986‑M2/5‑91 (MQ=255)

                                                                                       cgagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAag      >  2:713135‑M2/5‑91 (MQ=255)

                                                                                        gagGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTaaa        >  2:2819486‑M2/4‑88 (MQ=255)

                                                                                          gGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAAGAGt   <  1:2952416‑M2/90‑1 (MQ=255)

                                                                                          gGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCCCTAAATTACAAATACAGTTATCAACGCATTAAAagag    <  1:1010556‑M2/89‑1 (MQ=255)

                                                                                           gtgtCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAAGAGTa  <  2:3771064/91‑1 (MQ=255)

AGGGCCTAGGGCATTGATTCATGTCCGAGACTATATTCAATTTAATAGACATTAACTGGGCGTCTCGATGCTA‑ATATTTATAGCATCGAGGTGTCCTTTTTATTTTATTTTTTAACACATCAGCATAGTGAACACCCCTTCTCTAAATTACAAATACAGTTATCAACGCATTAAAAGAGTA  >  USA300TCH1516_ALE/1430122‑1430302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.