BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2087015	348 (0.970)	22 (0.070)	14/142	NT	6.3%	intergenic (‑166/‑519)	scn_3/chp	Staphylococcal complement inhibitor/Chemotaxis inhibitory protein
*	?	USA300TCH1516_ALE	= 2087021	350 (1.110)	22 (0.070)	14/142	NT	6.3%	intergenic (‑172/‑513)	scn_3/chp	Staphylococcal complement inhibitor/Chemotaxis inhibitory protein

Only 100 of 466 total aligned reads displayed.

TAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGC  >  USA300TCH1516_ALE/2086931‑2087111

taGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGaaa                                                                                            >  1:1119548/1‑91 (MQ=255)

taGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGaaa                                                                                            >  1:5504723/1‑91 (MQ=255)

    tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct                                                                                        >  2:4058788‑M2/1‑87 (MQ=255)

    tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct                                                                                        >  1:5433540‑M2/1‑87 (MQ=255)

    tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct                                                                                        <  2:5898649‑M2/91‑5 (MQ=255)

     cttcttATTAAATGAAAAATAATAAATTATCAAATTGACATACCTTATTGTAAAAATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgctt                                                                                       >  2:3614835‑M2/1‑86 (MQ=255)

      ttcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgctta                                                                                      >  2:2746298‑M2/1‑85 (MQ=255)

       tcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttac                                                                                     >  1:529051‑M2/1‑84 (MQ=255)

        cttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttacc                                                                                    >  1:822535‑M2/1‑83 (MQ=255)

        cttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttacc                                                                                    >  1:4809990‑M2/1‑83 (MQ=255)

         ttattaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAATAGGTAAGCACCGAAAtgcttacct                                                                                   >  1:6765862‑M2/1‑82 (MQ=255)

         ttattaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttacct                                                                                   >  2:2253568‑M2/1‑82 (MQ=255)

          tattaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTa                                                                                  >  1:6128721/1‑91 (MQ=255)

           attaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTAc                                                                                 >  1:2778928/1‑91 (MQ=255)

           attaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAAAAAAAAAAGGTAAGCACCGAAATGCTTACCTAc                                                                                 >  2:5161606/1‑91 (MQ=255)

            ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt                                                                                <  1:6388862/91‑1 (MQ=255)

            ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt                                                                                <  1:5024104/91‑1 (MQ=255)

               aaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTcc                                                                             <  2:387443/91‑1 (MQ=255)

               aaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTcc                                                                             <  2:3936606/91‑1 (MQ=255)

                aTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTccc                                                                            <  2:4954900/91‑1 (MQ=255)

                aTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTAAAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTccc                                                                            <  2:3087699/91‑1 (MQ=255)

                 tGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCa                                                                           <  2:1406880/91‑1 (MQ=255)

                 tGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCa                                                                           <  2:6561011/91‑1 (MQ=255)

                  gAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCAt                                                                          >  1:3500055/1‑91 (MQ=255)

                    aaaTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATaa                                                                        >  1:2246262/1‑91 (MQ=255)

                    aaaTTAATAAATTATCAAATTGACATACCTCATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATaa                                                                        <  2:6918978/91‑1 (MQ=255)

                      aTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAAc                                                                      <  2:3178561/91‑1 (MQ=255)

                      aTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAAc                                                                      <  2:3383278/91‑1 (MQ=255)

                      aTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAAc                                                                      <  2:4122986/91‑1 (MQ=255)

                      aTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAAc                                                                      <  2:78221/91‑1 (MQ=255)

                       ttAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACa                                                                     >  2:883631/1‑91 (MQ=255)

                        taataaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACaa                                                                    >  1:1571274/1‑91 (MQ=255)

                          ataaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAata                                                                  >  1:6859806/1‑91 (MQ=255)

                          ataaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAata                                                                  >  2:5431001/1‑91 (MQ=255)

                           taaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAatat                                                                 >  1:4629409/1‑91 (MQ=255)

                             aaTTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATaa                                                               >  1:1750793/1‑91 (MQ=255)

                             aaTTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATaa                                                               <  2:161885/91‑1 (MQ=255)

                              aTTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttacctttgtttgtttttctataaata                                                              <  1:310890‑M2/91‑31 (MQ=255)

                                 aTCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAAcaca                                                           <  1:555902/91‑1 (MQ=255)

                                    aaaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACatat                                                        >  1:4370068/1‑91 (MQ=255)

                                    aaaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACatat                                                        >  2:2782794/1‑91 (MQ=255)

                                    aaaTTGACATACCTTATTGTATTTAAAGAAAAACGAAAAAAGGTAAGCACCGAAAAGCTTAACTACTTCCCATAAACAATATAACACatat                                                        <  1:972092/91‑1 (MQ=255)

                                     aaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACAtata                                                       >  1:709590/1‑91 (MQ=255)

                                      aTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATAc                                                      <  2:4677442/91‑1 (MQ=255)

                                       ttGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACa                                                     <  2:5724628/91‑1 (MQ=255)

                                       ttGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACa                                                     <  1:1995139/91‑1 (MQ=255)

                                       ttGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACa                                                     >  1:2413231/1‑91 (MQ=255)

                                       ttGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACa                                                     <  1:1044030/91‑1 (MQ=255)

                                        tGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACAt                                                    <  1:3678641/91‑1 (MQ=255)

                                         gACATACCTTATTGTATTTATAGAATAACAAAAAAAGGTAAGCACCGAAATGCTTACCGACTGCCAATGAACAATATAACACATACTCAtt                                                   >  2:4561726/1‑91 (MQ=255)

                                          aCATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTg                                                  >  2:1732190/1‑91 (MQ=255)

                                          aCATACCTTATTGTATTTAAAAAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTg                                                  <  2:4360587/91‑1 (MQ=255)

                                             tACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAtt                                               <  1:4547937/91‑1 (MQ=255)

                                              aCCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAttt                                              >  1:4236875/1‑91 (MQ=255)

                                               ccTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTg                                             <  1:4955250/91‑1 (MQ=255)

                                               ccTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTg                                             >  2:6838817/1‑91 (MQ=255)

                                                  tATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGaa                                          >  1:398694/1‑91 (MQ=255)

                                                  tATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGaa                                          <  2:1586222/91‑1 (MQ=255)

                                                    ttGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAg                                        >  2:2015661/1‑91 (MQ=255)

                                                      gTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAgcg                                      <  1:1905682/91‑1 (MQ=255)

                                                        aTTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCa                                    >  2:330052/1‑91 (MQ=255)

                                                         tttATAGAAAAACAAAAAAAGGTATGCACCGAAATGCTTACCTACTTGCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa                                   >  2:5221033/1‑91 (MQ=255)

                                                         tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa                                   >  1:2674743/1‑91 (MQ=255)

                                                         tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa                                   >  2:60211/1‑91 (MQ=255)

                                                         tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa                                   <  1:3771005/91‑1 (MQ=255)

                                                          ttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaaa                                  >  2:3126151/1‑91 (MQ=255)

                                                            ataGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaaaaa                                <  2:3648474/91‑1 (MQ=255)

                                                               gAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataa                             >  1:2892170/1‑91 (MQ=255)

                                                                aaaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaa                            <  2:5638094/91‑1 (MQ=255)

                                                                aaaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaa                            >  1:3285512/1‑91 (MQ=255)

                                                                aaaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaa                            >  2:1234301/1‑91 (MQ=255)

                                                                aaaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaa                            >  1:1239711/1‑91 (MQ=255)

                                                                  aaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAAtt                          >  1:339353/1‑91 (MQ=255)

                                                                   aaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAACCACTATAACACATATACATTGATTTGGAAAGCGCAAAAATAAAttt                         >  1:3050517/1‑91 (MQ=255)

                                                                       aaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAata                     >  2:70900/1‑91 (MQ=255)

                                                                         aaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAAtata                   >  1:6462137/1‑91 (MQ=255)

                                                                         aaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAAtata                   >  1:356384/1‑91 (MQ=255)

                                                                          aaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATAc                  <  2:6211394/91‑1 (MQ=255)

                                                                           aaGGTAAGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaata                 <  1:5973045‑M2/91‑76 (MQ=255)

                                                                           aaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATCTAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACt                 >  2:6473177/1‑91 (MQ=255)

                                                                           aaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACt                 <  2:4265517/91‑1 (MQ=255)

                                                                             ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg               <  2:6722361/91‑1 (MQ=255)

                                                                             ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg               >  1:4096456/1‑91 (MQ=255)

                                                                             ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg               <  2:132418/91‑1 (MQ=255)

                                                                             ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg               >  1:245347/1‑91 (MQ=255)

                                                                              gTAAGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataaga              <  1:5374189‑M2/91‑79 (MQ=255)

                                                                              gTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGc              <  2:6346514/91‑1 (MQ=255)

                                                                              gTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGc              >  1:1333161/1‑91 (MQ=255)

                                                                               tAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGcc             <  2:2198216/91‑1 (MQ=255)

                                                                               tAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGcc             >  2:1809496/1‑91 (MQ=255)

                                                                                aaGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGccc            >  1:427939/1‑91 (MQ=255)

                                                                                aaGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGccc            <  1:5882838/91‑1 (MQ=255)

                                                                                 aGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaaga           <  2:1483123‑M2/91‑82 (MQ=255)

                                                                                 aGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaaga           <  1:6663469‑M2/91‑82 (MQ=255)

                                                                                 aGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCg           >  1:5234073/1‑91 (MQ=255)

                                                                                    aCCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAg        <  1:6251458/91‑1 (MQ=255)

                                                                                      cGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaagatctat      <  2:2409596‑M2/91‑87 (MQ=255)

                                                                                          atgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaagatctatatag  <  1:5723957‑M2/91‑91 (MQ=255)

                                                                                          aTGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGc  <  2:3466282/91‑1 (MQ=255)

                                                                                          aTGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGc  <  2:1865133/91‑1 (MQ=255)

TAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGC  >  USA300TCH1516_ALE/2086931‑2087111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.