BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2150647 =	286 (0.800)	16 (0.050)	11/136	NT	6.0%	intergenic (+310/+57)	agrA/scrK	Accessory gene regulator A/Fructokinase
*	?	USA300TCH1516_ALE	2150691 =	257 (0.850)	16 (0.050)	11/136	NT	6.0%	intergenic (+354/+13)	agrA/scrK	Accessory gene regulator A/Fructokinase

Only 100 of 435 total aligned reads displayed.

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

ataaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            >  2:2068655/1‑91 (MQ=255)

ataaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            >  1:6523771/1‑91 (MQ=255)

ataaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            <  1:4716299/91‑1 (MQ=255)

   aaaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaa                                                                                         >  1:4173036/1‑91 (MQ=255)

     aTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAAt                                                                                       <  1:267339/91‑1 (MQ=255)

     aTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAAt                                                                                       <  2:2807650/91‑1 (MQ=255)

      tGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      >  2:1188497/1‑91 (MQ=255)

      tGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      <  1:1985836/91‑1 (MQ=255)

       gCTATAATTTCCTACTCCGTGAATGTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGa                                                                                     <  1:6624021/91‑1 (MQ=255)

       gCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGa                                                                                     >  1:4510388/1‑91 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    <  1:1111983/91‑1 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    >  1:6282056/1‑91 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    <  1:586934/91‑1 (MQ=255)

           taATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAatta                                                                                 <  1:6104730/91‑1 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattat                                                                                <  1:3884109/91‑1 (MQ=255)

               ttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTa                                                                             <  2:3056069/91‑1 (MQ=255)

               ttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTa                                                                             <  1:1068339/91‑1 (MQ=255)

                tCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaa                                                                            <  2:4454525/91‑1 (MQ=255)

                tCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaa                                                                            <  1:5134136/91‑1 (MQ=255)

                 ccTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaa                                                                           <  2:294896/91‑1 (MQ=255)

                  cTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaaa                                                                          >  1:6403056/1‑91 (MQ=255)

                   tACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAAt                                                                         >  2:3260392/1‑91 (MQ=255)

                    aCTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATg                                                                        <  2:203966/91‑1 (MQ=255)

                    aCTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATg                                                                        >  2:1432832/1‑91 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       <  1:3390883/91‑1 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       <  2:4017782/91‑1 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       <  2:577718/91‑1 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       >  2:4746430/1‑91 (MQ=255)

                        cGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTg                                                                    <  1:4978626/91‑1 (MQ=255)

                          tGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGtt                                                                  <  1:1023318/91‑1 (MQ=255)

                            aaTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATCTAAAATGATTGTTCa                                                                >  2:5386270/1‑91 (MQ=255)

                             aTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCaa                                                               <  2:1812087/91‑1 (MQ=255)

                              taaataattcatttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAAc                                                              >  1:2348809‑M2/61‑91 (MQ=255)

                              tCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAc                                                              <  2:6115763/91‑1 (MQ=255)

                              tCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAc                                                              >  2:2237529/1‑91 (MQ=255)

                               cTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAcc                                                             >  2:1891279/1‑91 (MQ=255)

                                ttATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACct                                                            >  2:2671592/1‑91 (MQ=255)

                                 tATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctc                                                           >  2:6903396/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  2:5344855/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  1:1926996/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  1:3492846/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  1:370288/91‑1 (MQ=255)

                                      tGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTa                                                      <  2:3666938/91‑1 (MQ=255)

                                      tGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTa                                                      <  2:1052837/91‑1 (MQ=255)

                                        ttttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    >  2:3864443/1‑91 (MQ=255)

                                        ttttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    <  2:2406127/91‑1 (MQ=255)

                                         tttAAACACCAGTGTAGCACAAGATTCCACTTGTTTGCTACACAGTTTTATAAATGACTTATTTACAATGCTCGTTCAACCTCTTGTAATg                                                   >  2:5090915/1‑91 (MQ=255)

                                         tttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   <  2:6577253/91‑1 (MQ=255)

                                          ttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGt                                                  <  1:5427504/91‑1 (MQ=255)

                                           tAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGtt                                                 <  2:5274320/91‑1 (MQ=255)

                                            aaaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTg                                                >  1:5962222/1‑91 (MQ=255)

                                             taaaacagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTgg                                               >  1:1801287‑M2/46‑91 (MQ=255)

                                              AAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGc                                              >  1:458608‑M1/1‑91 (MQ=255)

                                               aaaCAGTGTATCACAAGATTCAACTTGTTTTCTACATTGTTTTATAAATGAATTTTTTATAATGCTTATTCAACCTCTTGTAATGTTggaa                                             >  2:1288933/1‑89 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           >  1:5181140‑M1/1‑91 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:2746733‑M1/1‑91 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:3139500‑M1/1‑91 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          <  2:2613858‑M1/91‑1 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          <  2:289797‑M1/91‑1 (MQ=255)

                                                   AGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACt                                         <  2:665057‑M1/91‑1 (MQ=255)

                                                    GTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  2:3556303‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  2:4636105‑M1/72‑1 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  1:4636105‑M1/1‑72 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       <  2:5193279‑M1/91‑1 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  1:1375910‑M1/1‑91 (MQ=255)

                                                      GTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAtt                                      <  1:2866663‑M1/91‑1 (MQ=255)

                                                       TAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTa                                     >  2:4207728‑M1/1‑91 (MQ=255)

                                                        AGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTaa                                    <  1:1501459‑M1/91‑1 (MQ=255)

                                                         ggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  1:1272819‑M2/34‑91 (MQ=255)

                                                         ggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  1:755948‑M2/34‑91 (MQ=255)

                                                         GCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   <  2:6164881‑M1/91‑1 (MQ=255)

                                                           acaAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAg                                 >  1:1744507/1‑91 (MQ=255)

                                                            caAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGc                                >  1:2127027/1‑91 (MQ=255)

                                                            caAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGc                                <  2:5980698/91‑1 (MQ=255)

                                                            aacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGc                                >  1:6060821‑M2/31‑91 (MQ=255)

                                                              aGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCAc                              <  2:4118222/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            >  2:1115459/1‑91 (MQ=255)

                                                                 ttCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCAt                           >  2:165378/1‑91 (MQ=255)

                                                                  ttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATa                          >  2:3838976‑M2/25‑91 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  2:779216/91‑1 (MQ=255)

                                                                         gTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGtt                   <  1:678208/91‑1 (MQ=255)

                                                                          tttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTg                  >  1:6967476/1‑91 (MQ=255)

                                                                          tttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTg                  <  1:5612825/91‑1 (MQ=255)

                                                                          tttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTg                  <  1:3605280/91‑1 (MQ=255)

                                                                          tttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTCGGCAAACTATTAATAGCACCATACTTCGTTg                  >  1:6484242/1‑91 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                >  1:5292103/1‑91 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               >  1:4346184/1‑91 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               >  2:6424236/1‑91 (MQ=255)

                                                                              ctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGt                 <  1:3269758‑M2/76‑1 (MQ=255)

                                                                              ctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCAc              >  1:6188136‑M2/13‑91 (MQ=255)

                                                                               tacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  2:4934944‑M2/12‑91 (MQ=255)

                                                                               tacactgttttATAAATGAATTATTTAAAATGCATGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  1:6938701‑M2/12‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         >  1:2402737‑M2/8‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         >  2:5599269‑M2/8‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         >  2:6294274‑M2/8‑91 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     <  1:1549152‑M2/88‑1 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagca    <  2:1212423‑M2/89‑1 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagca    <  2:2126091‑M2/89‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  1:6726550/91‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  1:2317490/91‑1 (MQ=255)

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.