BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2444885	289 (0.810)	15 (0.050)	10/140	NT	5.4%	intergenic (‑38/+187)	mleN_2/USA300HOU_RS12595	Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein
*	?	USA300TCH1516_ALE	= 2444897	276 (0.880)	15 (0.050)	10/140	NT	5.4%	intergenic (‑50/+175)	mleN_2/USA300HOU_RS12595	Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein

Only 100 of 379 total aligned reads displayed.

GGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCAT  >  USA300TCH1516_ALE/2444807‑2444987

   aataatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAaga                                                                                         <  1:119137‑M2/91‑4 (MQ=255)

    ataatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaa                                                                                        >  1:3265927‑M2/1‑87 (MQ=255)

      aatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaag                                                                                      >  1:1046979‑M2/1‑85 (MQ=255)

      aatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaag                                                                                      >  2:2737552‑M2/1‑85 (MQ=255)

      aatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaag                                                                                      >  2:3440104‑M2/1‑85 (MQ=255)

       atGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaaga                                                                                     <  1:1063944‑M2/91‑8 (MQ=255)

         gCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaagagg                                                                                   >  1:72691‑M2/1‑82 (MQ=255)

         gCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaagagg                                                                                   <  1:5716874‑M2/91‑10 (MQ=255)

          cccAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaagaggt                                                                                  <  1:2778632‑M2/91‑11 (MQ=255)

           ccAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGtt                                                                                 <  1:1747224/91‑1 (MQ=255)

           ccAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGtt                                                                                 >  1:5894845/1‑91 (MQ=255)

             aaGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCTAATCGATGAAGAAAGAGGtttt                                                                               >  2:5614213/1‑91 (MQ=255)

             aaGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGtttt                                                                               <  2:6933231/91‑1 (MQ=255)

                cATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAt                                                                            >  1:5584242/1‑91 (MQ=255)

                cATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAt                                                                            >  2:4358480/1‑91 (MQ=255)

                cATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAt                                                                            <  2:553753/91‑1 (MQ=255)

                 aTTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaa                                                                                        >  1:5623689‑M2/1‑74 (MQ=255)

                  ttGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAtgt                                                                          >  2:4746402/1‑91 (MQ=255)

                  ttGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAtgt                                                                          <  2:2557698/91‑1 (MQ=255)

                  ttGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAtgt                                                                          >  2:798552/1‑91 (MQ=255)

                   tGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAtgtg                                                                         <  2:3789951/91‑1 (MQ=255)

                    gCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGc                                                                        >  1:4676133/1‑91 (MQ=255)

                      tctTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCtt                                                                      <  2:4830331/91‑1 (MQ=255)

                         ttttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTAc                                                                   <  1:484589/91‑1 (MQ=255)

                          tttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTAcc                                                                  >  2:1788161/1‑91 (MQ=255)

                          tttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTAcc                                                                  >  2:848784/1‑91 (MQ=255)

                          tttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTAcc                                                                  <  2:3855599/91‑1 (MQ=255)

                           ttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACTAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCt                                                                 <  1:3331574/91‑1 (MQ=255)

                            tATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTg                                                                <  2:4411583/91‑1 (MQ=255)

                            tATGGACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTg                                                                <  2:375310/91‑1 (MQ=255)

                             aTGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGc                                                               <  1:3938375/91‑1 (MQ=255)

                             aTGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGc                                                               >  2:1573178/1‑91 (MQ=255)

                              tGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCt                                                              >  2:1510163/1‑91 (MQ=255)

                                 aCTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTAt                                                           >  2:1194984/1‑91 (MQ=255)

                                 aCTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTAt                                                           >  2:5076042/1‑91 (MQ=255)

                                     ccATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTc                                                       >  2:4970445/1‑91 (MQ=255)

                                      cATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGTTGCagaaagaggtatttttaattcgaaagcaggtaaaaagg                                                      <  2:660660‑M2/91‑39 (MQ=255)

                                       aTCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaa                                                     <  1:1573709/91‑1 (MQ=255)

                                       aTCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaa                                                     <  1:253645/91‑1 (MQ=255)

                                        tCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaaa                                                    <  1:453869/91‑1 (MQ=255)

                                        tCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaaa                                                    >  1:4113207/1‑91 (MQ=255)

                                           tttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCa                                                 <  2:6284590/91‑1 (MQ=255)

                                            ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt                                                <  1:1392412/91‑1 (MQ=255)

                                            ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt                                                >  1:2038481/1‑91 (MQ=255)

                                            ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt                                                <  1:1154763/91‑1 (MQ=255)

                                            ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt                                                >  1:4504057/1‑91 (MQ=255)

                                             tttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAtt                                               <  1:2407422/91‑1 (MQ=255)

                                             tttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAtt                                               <  2:2492757/91‑1 (MQ=255)

                                              ttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAagaaagaggtatttttaattggaaagcaggtaaaaaggatggaagt                                              <  1:5397330‑M2/91‑47 (MQ=255)

                                              ttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTa                                              >  1:3161226/1‑91 (MQ=255)

                                              ttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTa                                              >  1:5278611/1‑91 (MQ=255)

                                               tACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTAc                                             <  2:4142775/91‑1 (MQ=255)

                                                aCCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCCAACCATTACg                                            >  2:2184314/1‑91 (MQ=255)

                                                 ccTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGCGCTTTACCTGCTTATCTTCAAACCATTGCgg                                           >  1:6493252/1‑91 (MQ=255)

                                                  cTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGt                                          >  1:3459434/1‑91 (MQ=255)

                                                   tGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGtt                                         >  2:2792464/1‑91 (MQ=255)

                                                   tGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGtt                                         <  1:5439934/91‑1 (MQ=255)

                                                    gCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa                                        >  1:4417577/1‑91 (MQ=255)

                                                    gCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa                                        <  2:326102/91‑1 (MQ=255)

                                                    gCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa                                        >  1:4492542/1‑91 (MQ=255)

                                                     gtttCCAATTAAAAATACCTCTATCTCACGCATGTAGAAGAAAGAGATTTTCAGGTGCTTTTCCTGCTTATCTTCAAACCATTACTGTTAc                                       <  2:6130398/90‑1 (MQ=255)

                                                     cTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTAc                                       <  2:5680496/91‑1 (MQ=255)

                                                     cTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATATTCAAACCATTTCGtttcc                                       <  2:52505/91‑3 (MQ=255)

                                                      tttCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACt                                      <  2:465620/91‑1 (MQ=255)

                                                       ttCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTg                                     <  1:2258206/91‑1 (MQ=255)

                                                       ttCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTg                                     <  2:1063944/91‑1 (MQ=255)

                                                            aTTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAAtt                                <  2:454879/91‑1 (MQ=255)

                                                              tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg                              <  2:5947142/91‑1 (MQ=255)

                                                              tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg                              <  2:3682489/91‑1 (MQ=255)

                                                              tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg                              >  1:2658449/1‑91 (MQ=255)

                                                              tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg                              <  1:3226241/91‑1 (MQ=255)

                                                              tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGATTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg                              <  1:5786014/91‑1 (MQ=255)

                                                               aaaaaTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGc                             >  1:6771871/1‑91 (MQ=255)

                                                               aaaaaTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGc                             <  1:6047996/91‑1 (MQ=255)

                                                                aaaaTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGca                            >  2:3377535/1‑91 (MQ=255)

                                                                aaaaTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGca                            >  1:3520316/1‑91 (MQ=255)

                                                                   aTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACAt                         >  2:6540868/1‑91 (MQ=255)

                                                                   aTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACAt                         >  2:2665341/1‑91 (MQ=255)

                                                                   aTACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACAt                         >  1:6446002/1‑91 (MQ=255)

                                                                    tACCTCTTTCTCACAAGCGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACAtt                        <  2:4282032/91‑1 (MQ=255)

                                                                     aCCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTc                       >  1:878574/1‑91 (MQ=255)

                                                                     aCCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTc                       >  2:1874315/1‑91 (MQ=255)

                                                                      ccTCTTTCTCACAAACGATGAagaaagaggtatttttaattggaaagcaggtaaaaaggatggaagtacataaaaagagcaatgcttgggc                      <  1:1120573‑M2/91‑71 (MQ=255)

                                                                      ccTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCg                      <  1:6589049/91‑1 (MQ=255)

                                                                      ccTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCg                      >  2:1358873/1‑91 (MQ=255)

                                                                      ccTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCg                      >  1:428256/1‑91 (MQ=255)

                                                                      ccTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCg                      >  1:1264413/1‑91 (MQ=255)

                                                                          tttCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGAt                  >  2:2850361/1‑91 (MQ=255)

                                                                            tctcACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGt                <  1:5142127/91‑1 (MQ=255)

                                                                               cacaAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGc             <  1:3613042/91‑1 (MQ=255)

                                                                               cacaAACGATGAAGAAAGAGGTTTTCATGAGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGc             <  1:6184792/91‑1 (MQ=255)

                                                                                acaAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGcc            >  2:5374858/1‑91 (MQ=255)

                                                                                   aaCGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAg         >  2:2333770/1‑91 (MQ=255)

                                                                                     cGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGc       <  2:5480389/91‑1 (MQ=255)

                                                                                      gATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCt      <  1:831204/91‑1 (MQ=255)

                                                                                      gATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCt      <  2:5790180/91‑1 (MQ=255)

                                                                                      gATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCt      <  1:3782326/91‑1 (MQ=255)

                                                                                       aTGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCtt     >  1:29123/1‑91 (MQ=255)

                                                                                        tGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTc    >  1:5093041/1‑91 (MQ=255)

                                                                                          aagaaagaGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCAt  <  2:58808/91‑1 (MQ=255)

GGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCAT  >  USA300TCH1516_ALE/2444807‑2444987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.