New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2696548 =357 (1.000)11 (0.040) 9/140 NT 3.4% intergenic (+100/‑140) USA300HOU_RS13875/copA hypothetical protein/Copper‑exporting P‑type ATPase A
?USA300TCH1516_ALE 2696587 = 310 (0.990)intergenic (+139/‑101) USA300HOU_RS13875/copA hypothetical protein/Copper‑exporting P‑type ATPase A
Rejected: Frequency below/above cutoff threshold.

Only 100 of 438 total aligned reads displayed.

TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGGG  >  USA300TCH1516_ALE/2696497‑2696677
                                                                                          |                                                                                          
 tcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtcttt                                                                                           <  1:1695634/91‑1 (MQ=255)
  catACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttt                                                                                          <  2:6798281/91‑1 (MQ=255)
    tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttt                                                                                        >  2:6911690/1‑90 (MQ=255)
     aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                                                       <  2:4983242/91‑1 (MQ=255)
      cATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctt                                                                                      <  1:6499495/91‑1 (MQ=255)
       aTCCTTTAATATTAATTACGACTTCTTTTATATTGATGCTAAGTAGAGAGATTGTTGTGAAAAGTTTGCACGGCAATCTCtctttttcttt                                                                                     <  2:4243230/91‑1 (MQ=255)
       aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                                                                     <  1:743946/91‑1 (MQ=255)
        tCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctttt                                                                                    >  1:3112102/1‑91 (MQ=255)
           tttAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaa                                                                                 <  2:3532015/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               <  2:1917602/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               <  1:4556309/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               <  1:4199287/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               <  2:5226366/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               <  1:2664981/91‑1 (MQ=255)
             tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                               >  2:3430584/1‑91 (MQ=255)
              aaTATGAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt                                                                              <  2:3340635/91‑1 (MQ=255)
               atatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAtt                                                                             <  2:4503084/91‑1 (MQ=255)
                 attaattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTgg                                                                           <  1:6225710/91‑1 (MQ=255)
                  gtaattaCGACTTCTTTTATATCGATGCTTAGTCGAGAGATTGTTGTTCTTTGTTTGGATGGCAATCTCTCTTTTTCTTTTCAAAATTGgt                                                                          >  2:4873094/2‑91 (MQ=255)
                      ttaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaa                                                                      >  2:4557103/1‑91 (MQ=255)
                       taCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                                                                     >  2:1079081/1‑91 (MQ=255)
                        aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                    <  1:5600514/91‑1 (MQ=255)
                        aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                    <  1:4529601/91‑1 (MQ=255)
                        aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                    <  1:2727745/91‑1 (MQ=255)
                            cttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaaa                                                                >  1:2821534/1‑91 (MQ=255)
                            cttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaaa                                                                <  1:5101445/91‑1 (MQ=255)
                             ttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAAc                                                               <  1:3043299/91‑1 (MQ=255)
                              tcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACg                                                              <  2:1541621/91‑1 (MQ=255)
                               taccaattttaaaaagaaaaAGAGAGATTGCTGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                             <  2:6228397‑M1/71‑1 (MQ=255)
                               cttTTATATAGATGCTAAGTAGAGCGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                             <  1:6630534/91‑1 (MQ=255)
                               cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                             >  2:3708250/1‑91 (MQ=255)
                                ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                                                            <  1:6997861/91‑1 (MQ=255)
                                ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                                                            <  2:2285150/91‑1 (MQ=255)
                                 tttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCaa                                                           >  1:6111753/1‑91 (MQ=255)
                                  ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                                                          >  1:956071/1‑91 (MQ=255)
                                  ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                                                          <  1:239175/91‑1 (MQ=255)
                                   tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                                                         <  2:779393/91‑1 (MQ=255)
                                   tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                                                         <  2:4035510/91‑1 (MQ=255)
                                     tgtaGATGCTAAGTAGAGAGATTGTTGTGAAGTGTTTGCAGGGCAATCTCTCGTTTTCATTTTATAATTGGTAAACGTAAAACGAAACAAt                                                       >  1:5838285/3‑91 (MQ=255)
                                      ataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAtt                                                      >  1:3601318/1‑91 (MQ=255)
                                          aTGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACt                                                  <  2:5792648/91‑1 (MQ=255)
                                           tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt                                                 >  2:5631985/1‑91 (MQ=255)
                                           tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt                                                 >  2:6291140/1‑91 (MQ=255)
                                             cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTTTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtat                                               >  2:6468246/1‑91 (MQ=255)
                                             cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtat                                               >  2:3852785/1‑91 (MQ=255)
                                               aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat                                             >  2:4665792/1‑91 (MQ=255)
                                               aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat                                             >  2:5364827/1‑91 (MQ=255)
                                                aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata                                            <  1:5328050/91‑1 (MQ=255)
                                                aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata                                            >  1:1910973/1‑91 (MQ=255)
                                                aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACAtatata                                            >  2:6397165/1‑91 (MQ=255)
                                                 ttAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc                                           <  2:3072960/90‑1 (MQ=255)
                                                 gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc                                           <  1:3356331/91‑1 (MQ=255)
                                                 gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc                                           <  1:2493967/91‑1 (MQ=255)
                                                  tAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc                                          <  2:1850813/91‑1 (MQ=255)
                                                    GAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCta                                        <  2:240527‑M1/91‑1 (MQ=255)
                                                     AGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtat                                       <  2:5949398‑M1/91‑1 (MQ=255)
                                                     AGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtat                                       <  1:5985425‑M1/91‑1 (MQ=255)
                                                      GAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtata                                      <  2:2860480‑M1/91‑1 (MQ=255)
                                                        gattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg                                    >  1:3786040‑M2/35‑91 (MQ=255)
                                                        GATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg                                    >  1:1309163‑M1/1‑91 (MQ=255)
                                                         ATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg                                   >  1:1486251‑M1/1‑91 (MQ=255)
                                                          ttgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg                                  >  2:3120967‑M2/33‑91 (MQ=255)
                                                            gccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt                                >  1:213074‑M2/31‑91 (MQ=255)
                                                            GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt                                >  2:206186‑M1/1‑91 (MQ=255)
                                                            GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt                                >  1:535466‑M1/1‑91 (MQ=255)
                                                             ttgtGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTa                               >  2:5069568/1‑91 (MQ=255)
                                                              tgtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAc                              <  1:4272561/91‑1 (MQ=255)
                                                                tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt                            <  1:4590619/91‑1 (MQ=255)
                                                                tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt                            <  2:2553602/91‑1 (MQ=255)
                                                                tgCAATGTCTGCACGGCAATCTCTCTTTTTGTTTTTAAAATTGGTCAAAGTAAACTGAAACGATTCACTTATATACCTATAGGGGGTACAt                            >  2:2653315/1‑91 (MQ=255)
                                                                  cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAGCGATTGACTTATATACCTATAGGGGGTACATTa                          <  2:1308562/91‑1 (MQ=255)
                                                                  cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa                          <  1:6854625/91‑1 (MQ=255)
                                                                  cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa                          <  1:4013368/91‑1 (MQ=255)
                                                                   aaTGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAg                         <  1:2927196/91‑1 (MQ=255)
                                                                     tGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGAc                       <  1:3430584/91‑1 (MQ=255)
                                                                     tGTTTGCACGGCAATCGCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAATCGCAACGATTGACTTATATACCTATAGGGGGTACATTAGAc                       <  1:6931060/91‑1 (MQ=255)
                                                                      gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg                      <  2:5454216/91‑1 (MQ=255)
                                                                      gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg                      >  1:4966257/1‑91 (MQ=255)
                                                                        ttGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtg                    <  1:3559288/91‑1 (MQ=255)
                                                                         tGCACGGCAATCTCTCTTTTTCTTTTTTTTTTTTTTTAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt                   >  2:1721453/1‑91 (MQ=255)
                                                                         tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt                   <  1:572350/91‑1 (MQ=255)
                                                                          gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa                  <  1:4886404/91‑1 (MQ=255)
                                                                          gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa                  <  1:4731983/91‑1 (MQ=255)
                                                                          gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa                  <  2:4436818/91‑1 (MQ=255)
                                                                           cacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa                 >  2:672424‑M2/16‑91 (MQ=255)
                                                                           cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa                 >  2:893934/1‑91 (MQ=255)
                                                                           cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa                 >  1:2553968/1‑91 (MQ=255)
                                                                           cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa                 >  1:6375567/1‑91 (MQ=255)
                                                                            aCGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc                >  2:2530102/1‑91 (MQ=255)
                                                                             cGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACa               >  2:4066472/1‑91 (MQ=255)
                                                                               gCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAAt             >  1:1976257/1‑91 (MQ=255)
                                                                                  atctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGaa          <  1:4109934‑M2/83‑1 (MQ=255)
                                                                                   tctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAt         >  1:6670610‑M2/8‑91 (MQ=255)
                                                                                   tctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAt         <  1:3915946‑M2/84‑1 (MQ=255)
                                                                                    ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc        >  1:2466753‑M2/7‑91 (MQ=255)
                                                                                    ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc        <  1:1754952‑M2/85‑1 (MQ=255)
                                                                                     tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca       <  2:5554777‑M2/86‑1 (MQ=255)
                                                                                       tctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcaca     <  1:5456071‑M2/88‑1 (MQ=255)
                                                                                        ctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAg    <  1:1061367‑M2/89‑1 (MQ=255)
                                                                                         tTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAgg   <  2:1208784‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                          
TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGGG  >  USA300TCH1516_ALE/2696497‑2696677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.