BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2751374	349 (0.980)	10 (0.030)	6/146	NT	3.0%	intergenic (‑222/+39)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2751393	333 (1.020)	10 (0.030)	6/146	NT	3.0%	intergenic (‑241/+20)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 421 total aligned reads displayed.

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

 cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                                           >  2:759722‑M2/1‑90 (MQ=255)

 cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                                           <  2:6914445‑M2/91‑2 (MQ=255)

  tATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAGCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGca                                                                                          <  1:5360218‑M2/91‑3 (MQ=255)

  tATGATTCATCTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAGACAAAGTGAGTGTCTTGTGTTCTTACAATGGca                                                                                          >  1:6957665‑M2/1‑89 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         >  1:2664889‑M2/1‑88 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         >  1:5938626‑M2/1‑88 (MQ=255)

    tGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcact                                                                                        >  2:2788255‑M2/1‑87 (MQ=255)

    tGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcact                                                                                        >  2:3368775‑M2/1‑87 (MQ=255)

    tGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcact                                                                                        >  2:3585372‑M2/1‑87 (MQ=255)

       ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                                     >  2:3039916‑M2/1‑84 (MQ=255)

        tCATTTTGCGTTTAGTCCAAATAATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCAcc                                                                                    >  2:5330124/1‑91 (MQ=255)

         cATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCt                                                                                   <  1:5569718/91‑1 (MQ=255)

          aTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCtt                                                                                  <  1:3941278/91‑1 (MQ=255)

           ttttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTa                                                                                 <  2:138299/91‑1 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             <  2:5077225/91‑1 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            >  2:3798323/1‑91 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            <  2:5173401/91‑1 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTACTTACAATGGCATTAACCTTATCTaa                                                                            >  1:5268991/1‑91 (MQ=255)

                 gTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAt                                                                           <  2:551516/91‑1 (MQ=255)

                    tcgTCAAAATTATCAATCAACATTTCGCCACTTATACAAAACAAATTGAGTGTCTTGTGTTCTTACAATGGCCCTCACCTTATCTATtttt                                                                        >  2:2827876/3‑91 (MQ=255)

                      gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTa                                                                      >  2:3700625/1‑91 (MQ=255)

                       tCCAAATTATCACTCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                                     <  2:4642991/91‑1 (MQ=255)

                       tCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                                     <  1:2017756/91‑1 (MQ=255)

                        ccAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAtt                                                                    <  1:3602465/91‑1 (MQ=255)

                        ccAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATCGCACTCACCTTATCTAATTTTTAtt                                                                    >  2:6497490/1‑91 (MQ=255)

                          aaaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTg                                                                  >  2:2102603/1‑91 (MQ=255)

                           aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                                                 >  2:4523181/1‑91 (MQ=255)

                           aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                                                 <  1:6458760/91‑1 (MQ=255)

                           aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                                                 >  2:4727479/1‑91 (MQ=255)

                            aTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCt                                                                <  1:4802523/91‑1 (MQ=255)

                               atcaatcaACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaaa                                                             >  1:3098358/1‑91 (MQ=255)

                                tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTTCAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAc                                                            <  1:6719166/91‑1 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  2:6281093/1‑91 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  1:891480/1‑91 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        >  2:5229413/1‑91 (MQ=255)

                                        cATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCAc                                                    <  1:169658/91‑1 (MQ=255)

                                        cATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCAc                                                    >  2:1031059/1‑91 (MQ=255)

                                          tttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTa                                                  >  2:1564496/1‑91 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                >  2:204134/1‑91 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                <  1:2418446/91‑1 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                <  1:5679026/91‑1 (MQ=255)

                                             cGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAtt                                               >  1:1348256/1‑91 (MQ=255)

                                              gCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtg                                              >  2:4909220/1‑91 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            <  1:6314228/91‑1 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            >  1:6686717/1‑91 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            >  1:4536379/1‑91 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          >  1:223760/1‑91 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          <  2:3242/91‑1 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          >  1:3398324/1‑91 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          >  1:1229584/1‑91 (MQ=255)

                                                   ttATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGat                                         <  1:2479773/91‑1 (MQ=255)

                                                     ataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGattt                                       <  1:4028018/91‑1 (MQ=255)

                                                      taCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttg                                      >  1:5010783/1‑91 (MQ=255)

                                                       acaaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgt                                     >  1:772470/1‑91 (MQ=255)

                                                       acaaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgt                                     >  2:4872632/1‑91 (MQ=255)

                                                        caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtg                                              <  2:5389863/81‑1 (MQ=255)

                                                         aaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtat                                   <  2:819237/91‑1 (MQ=255)

                                                         aaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtat                                   <  1:6605001/91‑1 (MQ=255)

                                                            acaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttg                                <  1:30128/91‑1 (MQ=255)

                                                              aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt                              <  2:5644660/91‑1 (MQ=255)

                                                              aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt                              >  2:2682382/1‑91 (MQ=255)

                                                               aaGTGAGTGACTTGTGATCTTACAATGGCACCCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGCATTCGTATTTGTTa                             >  1:6410548/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  2:4037698/91‑1 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  1:4609558/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  1:5149708/91‑1 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  2:341792/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  2:1131381/91‑1 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  2:6098091/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTACTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  1:2827876/91‑1 (MQ=255)

                                                                 gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa                           >  2:4443504/1‑91 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:1261840/1‑91 (MQ=255)

                                                                   gagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatc                         <  1:4406019‑M2/91‑68 (MQ=255)

                                                                   gagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAt                         <  2:435955/91‑1 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        >  1:1575350/1‑91 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        <  1:4727479/91‑1 (MQ=255)

                                                                      tgtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtgtg                      <  2:4128323/91‑1 (MQ=255)

                                                                       gtCTTGTGTTCTTACAATGGTACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATgtgt                     <  2:5809208/91‑1 (MQ=255)

                                                                       gtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATgtgt                     <  2:264102/91‑1 (MQ=255)

                                                                        tCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGtt                    <  1:3791091/91‑1 (MQ=255)

                                                                         cTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGttt                   <  1:1764871/91‑1 (MQ=255)

                                                                         cTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGttt                   <  1:4346028/91‑1 (MQ=255)

                                                                          ttGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGtttt                  >  1:1054107/1‑91 (MQ=255)

                                                                          ttGTGTTCTTACAATGGCACTCACCTTATCGAATATGTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGtttt                  <  2:6364939/91‑1 (MQ=255)

                                                                           tgtgTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTg                 >  1:2103102/1‑91 (MQ=255)

                                                                            gtgtTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGa                <  2:2361724/91‑1 (MQ=255)

                                                                             tgtTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTTaa               >  1:3185073/1‑91 (MQ=255)

                                                                               ttCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAAc             <  1:1133296/91‑1 (MQ=255)

                                                                               ttCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAAc             >  1:2327074/1‑91 (MQ=255)

                                                                               ttCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAAc             <  2:6604789/91‑1 (MQ=255)

                                                                                tCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagattatttca            <  2:2402064‑M2/91‑81 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         <  1:4272393/91‑1 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         >  1:2790436/1‑91 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         >  2:1685780/1‑91 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         <  2:6830234/91‑1 (MQ=255)

                                                                                      aaTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAc      >  1:6147082/1‑91 (MQ=255)

                                                                                       aTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAct     <  2:1869852/91‑1 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    >  2:4585411/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    <  1:356516/91‑1 (MQ=255)

                                                                                         ggCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActct   >  2:1768606/1‑91 (MQ=255)

                                                                                          gCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACtctt  >  1:5918733/1‑91 (MQ=255)

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.