New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 34 =553 (0.420)36 (0.030) 18/146 NT 5.1% intergenic (–/‑198) –/repA –/replication protein A
?CP000731 65 = 830 (0.690)intergenic (–/‑167) –/repA –/replication protein A

Only 100 of 1746 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCA  >  CP000731/1‑155
                                                                                         |                                                                                          
gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTgg                                                                                           >  1:889084‑M1/26‑91 (MQ=255)
 ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                          >  1:3085837‑M1/25‑91 (MQ=255)
 ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                          <  1:4356213‑M1/67‑1 (MQ=255)
  tatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGAGTTGGta                                                                                         <  1:5569347‑M1/68‑1 (MQ=255)
   atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                        <  2:6029269‑M1/69‑1 (MQ=255)
   atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                        <  2:2566974‑M1/69‑1 (MQ=255)
    tattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaat                                                                                       >  1:778553‑M1/22‑91 (MQ=255)
     attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaata                                                                                      >  2:2875456‑M1/21‑91 (MQ=255)
      ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                     <  1:3193363‑M1/72‑1 (MQ=255)
      ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                     <  2:3337129‑M1/72‑1 (MQ=255)
      ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                     <  1:6241924‑M1/72‑1 (MQ=255)
       tttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATaaa                                                                                    >  2:831640‑M1/19‑91 (MQ=255)
          cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 <  2:1052735‑M1/76‑1 (MQ=255)
          cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 <  1:5248164‑M1/76‑1 (MQ=255)
          cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 <  2:2691899‑M1/76‑1 (MQ=255)
          cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 <  2:5234162‑M1/76‑1 (MQ=255)
            cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                               >  1:714136‑M1/14‑91 (MQ=255)
             ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTTCTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                              >  2:4221808‑M1/13‑91 (MQ=255)
               ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                            >  1:6115529‑M1/11‑90 (MQ=255)
               ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                            >  1:573131‑M1/11‑90 (MQ=255)
                tataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                           <  2:206015‑M1/82‑1 (MQ=255)
                tataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                           >  1:1992858‑M1/10‑91 (MQ=255)
                 ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                          >  1:2862526‑M1/9‑91 (MQ=255)
                 ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                          <  1:159267‑M1/83‑1 (MQ=255)
                   aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                        >  2:3462433‑M1/7‑91 (MQ=255)
                   aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                        >  1:6679165‑M1/7‑91 (MQ=255)
                   aagtttATTTAAAGTGCTATAATAAACTTAAGATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                        >  1:6507974‑M1/7‑91 (MQ=255)
                    agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       <  2:1748392‑M1/86‑1 (MQ=255)
                    agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       <  2:6295155‑M1/86‑1 (MQ=255)
                      tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                     >  1:1837121‑M1/4‑91 (MQ=255)
                      tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                     <  2:1197440‑M1/88‑1 (MQ=255)
                      tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                     <  1:5438181‑M1/88‑1 (MQ=255)
                            tAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                               <  2:4627703/91‑1 (MQ=255)
                            tAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                               >  2:636452/1‑91 (MQ=255)
                             aataaacagtttctaatcgttttattaccAAACCCCAACTACGGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              >  1:6796360‑M1/30‑91 (MQ=255)
                             aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              <  2:6182130/91‑1 (MQ=255)
                             aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              <  2:4997139/91‑1 (MQ=255)
                             aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              <  1:5881536/91‑1 (MQ=255)
                             aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              <  1:2761857/91‑1 (MQ=255)
                              aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             <  1:3549905/91‑1 (MQ=255)
                              aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             >  2:5391385/1‑91 (MQ=255)
                              aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             >  1:3451421/1‑91 (MQ=255)
                               aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                            <  2:1865723/91‑1 (MQ=255)
                               aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                            >  1:1353891/1‑91 (MQ=255)
                                gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                           >  1:3930075/1‑91 (MQ=255)
                                gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                           <  2:5956796/91‑1 (MQ=255)
                                gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGATAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                           >  2:4709772/1‑91 (MQ=255)
                                     ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                      <  2:6609410/91‑1 (MQ=255)
                                      taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                     >  2:5102826/1‑91 (MQ=255)
                                      taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                     >  2:5687824/1‑91 (MQ=255)
                                       aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                                    >  1:299420/1‑91 (MQ=255)
                                        ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCg                                                   <  2:5484289/91‑1 (MQ=255)
                                         taaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGa                                                  <  2:3827347/91‑1 (MQ=255)
                                          aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                                 >  2:3694074/1‑91 (MQ=255)
                                            aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                               >  1:4742545/1‑91 (MQ=255)
                                            aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                               >  1:4492152/1‑91 (MQ=255)
                                             cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                              >  1:657990/1‑91 (MQ=255)
                                             cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                              >  1:6375852/1‑91 (MQ=255)
                                               tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                            <  1:6029269/91‑1 (MQ=255)
                                               tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGATTATTTATATAATTTTCGATACTTg                                            >  1:3787200/1‑91 (MQ=255)
                                                aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                           >  2:4099541/1‑91 (MQ=255)
                                                 atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                          <  2:1492911/91‑1 (MQ=255)
                                                      aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                                     <  1:1229266/91‑1 (MQ=255)
                                                       cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                                    >  1:2285563/1‑91 (MQ=255)
                                                       cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                                    <  1:1012271/91‑1 (MQ=255)
                                                        aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                                   <  2:4363985/91‑1 (MQ=255)
                                                        aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                                   <  1:4028097/91‑1 (MQ=255)
                                                         aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATGAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                  <  1:5787246/91‑1 (MQ=255)
                                                         aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                  <  1:3714134/91‑1 (MQ=255)
                                                           AACCCCAACTCCTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGGTTATTTATATAATTTTCGATACTTGTATTATATAATg                                >  1:2643183‑M1/1‑91 (MQ=255)
                                                             CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                              >  1:4588026‑M1/1‑91 (MQ=255)
                                                              CCCAACTACTGGTAATAGTCGGGGTCTGGTAATAAAACGTTTAGAAACTTTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                             >  2:6473693‑M1/1‑91 (MQ=255)
                                                               CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAACCTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                            <  2:6751765‑M1/91‑1 (MQ=255)
                                                               CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                            <  1:4871197‑M1/91‑1 (MQ=255)
                                                               CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                            <  1:422729‑M1/91‑1 (MQ=255)
                                                                CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                           <  2:717295‑M1/91‑1 (MQ=255)
                                                                 aaCTACTGGTAATAGTCGGGGTTTGGTAATACAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  2:6902666/1‑91 (MQ=255)
                                                                 aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  2:4874781/1‑91 (MQ=255)
                                                                 aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          <  2:2402642/91‑1 (MQ=255)
                                                                 aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          <  1:2534968/91‑1 (MQ=255)
                                                                 aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  2:198073/1‑91 (MQ=255)
                                                                  actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                         <  1:3332502/91‑1 (MQ=255)
                                                                  actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                         <  2:1634200/91‑1 (MQ=255)
                                                                    tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc                       <  1:4130866/91‑1 (MQ=255)
                                                                      ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt                     <  1:1712754/91‑1 (MQ=255)
                                                                       tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa                    >  1:5000463/1‑91 (MQ=255)
                                                                        ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg                   >  1:1112915/1‑91 (MQ=255)
                                                                           tctAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATCATATCTTAGTGc                >  2:4481353/3‑91 (MQ=255)
                                                                                 cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc          <  1:2170910/91‑1 (MQ=255)
                                                                                 cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc          <  1:1461848/91‑1 (MQ=255)
                                                                                  ggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         <  1:2429104‑M2/84‑1 (MQ=255)
                                                                                  ggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         >  1:5096157‑M2/8‑91 (MQ=255)
                                                                                  ggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         >  2:3992471‑M2/8‑91 (MQ=255)
                                                                                   gggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCt        <  2:215513‑M2/85‑1 (MQ=255)
                                                                                    ggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa       >  2:2244928‑M2/6‑91 (MQ=255)
                                                                                    ggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa       <  2:3050858‑M2/86‑1 (MQ=255)
                                                                                      tttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaaa     <  2:3211481‑M2/88‑1 (MQ=255)
                                                                                      tttGGTAATAAAACGTTTAGAAACTGTTTATATATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaaa     <  2:57813‑M2/88‑1 (MQ=255)
                                                                                        tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc   >  1:6917675‑M2/2‑91 (MQ=255)
                                                                                         ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCa  <  2:1353891/91‑1 (MQ=255)
                                                                                         |                                                                                          
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCA  >  CP000731/1‑155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.