New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 12000 =852 (0.650)34 (0.030) 20/136 NT 5.4% intergenic (+163/+60) USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 recombinase/hypothetical protein
?CP000731 12030 = 466 (0.420)intergenic (+193/+30) USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 recombinase/hypothetical protein

Only 100 of 1571 total aligned reads displayed.

CTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATA  >  CP000731/11940‑12120
                                                                                          |                                                                                          
  gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaat                                                                                          <  1:6490575/91‑1 (MQ=255)
   aCAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaata                                                                                         <  2:656354/91‑1 (MQ=255)
   aCAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaata                                                                                         >  2:6084300/1‑91 (MQ=255)
      gCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataa                                                                                      <  2:3861069/91‑1 (MQ=255)
       cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataat                                                                                     >  2:5644975/1‑91 (MQ=255)
        gTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataata                                                                                    <  1:1555474/91‑1 (MQ=255)
         tCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                   <  1:1366629/91‑1 (MQ=255)
           TAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCt                                                                                 <  1:4743667‑M1/91‑1 (MQ=255)
           TAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCt                                                                                 >  2:6820708‑M1/1‑91 (MQ=255)
             AAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGt                                                                               <  2:489172‑M1/91‑1 (MQ=255)
               ATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGttt                                                                             <  2:2944365‑M1/91‑1 (MQ=255)
               ATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGttt                                                                             >  1:6721451‑M1/1‑91 (MQ=255)
                TCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTc                                                                            >  1:3623211‑M1/1‑91 (MQ=255)
                TCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTc                                                                            >  2:1340602‑M1/1‑91 (MQ=255)
                  TCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTttccc                                                                          <  1:5808159‑M1/91‑3 (MQ=255)
                  TCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                                                                          >  1:271513‑M1/1‑91 (MQ=255)
                  TCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                                                                          <  2:2486922‑M1/91‑1 (MQ=255)
                    ATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTa                                                                        <  1:2540313‑M1/91‑1 (MQ=255)
                     TAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTaa                                                                       >  1:5689715‑M1/1‑91 (MQ=255)
                     TAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTaa                                                                       >  1:1231273‑M1/1‑91 (MQ=255)
                     TAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTaa                                                                       >  1:38205‑M1/1‑91 (MQ=255)
                      aacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                      >  1:1003797‑M2/26‑91 (MQ=255)
                      AATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                      >  2:4780200‑M1/1‑91 (MQ=255)
                      AATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                      <  1:2863314‑M1/91‑1 (MQ=255)
                      AATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                      <  2:2106326‑M1/91‑1 (MQ=255)
                       ATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATg                                                                     <  2:2223624‑M1/91‑1 (MQ=255)
                        tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                                                                    <  1:2195514/91‑1 (MQ=255)
                        tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                                                                    <  1:6999359/91‑1 (MQ=255)
                        tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTATTTCACTAATgc                                                                    >  2:4532548/1‑90 (MQ=255)
                        acttaaaacgttcattagtgaaacaggtattatattAAAAAAGCGTACGAATTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                                                                    <  2:4995660‑M1/55‑1 (MQ=255)
                         atTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGaa                                                                   >  1:6373551/1‑91 (MQ=255)
                         atTTTCCAGTTATGAGATTTTAATAATAACACAAGAAAAAAGTGTACAAATTCGTACGCTGTTTTAATATAATACCTGTTTCACTAATGaa                                                                   <  1:5552624/91‑1 (MQ=255)
                           tttCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACg                                                                 >  2:1243069/1‑91 (MQ=255)
                           taaaacgttcattagtgaaacaggtattatattAAAAAAGCGTACGAATTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACg                                                                 <  1:2994247‑M1/58‑1 (MQ=255)
                             tCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtt                                                               <  1:4333449/91‑1 (MQ=255)
                             tCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtt                                                               >  2:2814998/1‑91 (MQ=255)
                              ccTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                              >  2:2755216/1‑91 (MQ=255)
                              ccTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                              >  1:3278546/1‑91 (MQ=255)
                              ccTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                              >  2:527589/1‑91 (MQ=255)
                              ccTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                              >  1:899353/1‑91 (MQ=255)
                                tGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTa                                                            <  1:4105062/91‑1 (MQ=255)
                                 gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTaa                                                           >  1:1886963/1‑91 (MQ=255)
                                 gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTaa                                                           <  2:1623018/91‑1 (MQ=255)
                                  ttatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATGCCTGTTTCACTAATGAACGTTTTAAg                                                          <  2:1768134‑M2/78‑1 (MQ=255)
                                  ttatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg                                                          <  1:3709571‑M2/78‑1 (MQ=255)
                                   tatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGt                                                         <  2:346222‑M2/79‑1 (MQ=255)
                                   tatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGt                                                         <  1:1766582‑M2/79‑1 (MQ=255)
                                   tatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGt                                                         <  1:4422746‑M2/79‑1 (MQ=255)
                                      gatattttaATAATAACACAAGAAAAAAGCGGACAAATTCGAACGCTTTTTTAATAAAATACCTGTTTCACTAATGAACGTTTTAAGTatg                                                      <  2:3328188‑M2/82‑2 (MQ=255)
                                      gagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATc                                                      <  2:6478166‑M2/82‑1 (MQ=255)
                                       agattttaATAATAACACGAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCt                                                     <  1:5403347‑M2/83‑1 (MQ=255)
                                        agttaaacatgtattatattaaaaaagcgtacaaattcgtacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt                                                    <  2:4328115‑M2/41‑1 (MQ=255)
                                          ttttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtca                                                  <  1:3386614‑M2/86‑1 (MQ=255)
                                          ttttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtca                                                  <  2:5969602‑M2/86‑1 (MQ=255)
                                          ttttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtca                                                  >  2:516334‑M2/6‑91 (MQ=255)
                                            ttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtcatc                                                >  1:39612‑M2/4‑91 (MQ=255)
                                             taATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtcatca                                               >  2:6253267‑M2/3‑91 (MQ=255)
                                              aATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTcatcat                                              <  1:663513‑M2/90‑1 (MQ=255)
                                              aATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTcatcat                                              <  2:6682117‑M2/90‑1 (MQ=255)
                                              aATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTcatcat                                              >  1:145957‑M2/2‑91 (MQ=255)
                                              aATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTcatcat                                              <  1:2308136‑M2/90‑1 (MQ=255)
                                               ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt                                             >  2:232136/1‑91 (MQ=255)
                                               ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt                                             <  1:3183197/91‑1 (MQ=255)
                                               ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt                                             >  2:5421386/1‑91 (MQ=255)
                                               ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt                                             >  1:4219316/1‑91 (MQ=255)
                                                  ataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAAc                                          >  1:6074810/1‑91 (MQ=255)
                                                    aaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTg                                        <  1:6270360/91‑1 (MQ=255)
                                                     acacAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGa                                       >  1:4863760/1‑91 (MQ=255)
                                                     acacAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGa                                       >  1:498269/1‑91 (MQ=255)
                                                     acacAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGa                                       >  1:6878896/1‑91 (MQ=255)
                                                       acaAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtca                                                  >  2:916983/1‑78 (MQ=255)
                                                       acaAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGaaa                                     <  1:6178769/91‑1 (MQ=255)
                                                             AAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAg                               <  2:811651‑M1/91‑1 (MQ=255)
                                                             AAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAg                               >  2:3986004‑M1/1‑91 (MQ=255)
                                                               AAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGta                             >  2:6998430‑M1/1‑91 (MQ=255)
                                                               AAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGta                             >  1:1132767‑M1/1‑91 (MQ=255)
                                                                 AGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaat                           >  1:5967516‑M1/1‑91 (MQ=255)
                                                                 AGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaat                           >  2:5517966‑M1/1‑91 (MQ=255)
                                                                    GTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTaataat                        >  1:3514825‑M1/1‑91 (MQ=255)
                                                                     TACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAataata                       >  2:6352051‑M1/1‑91 (MQ=255)
                                                                      acgaatttgtacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATAc                      >  1:5285455‑M2/21‑91 (MQ=255)
                                                                         aaTTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACTGTAATAATACTct                   >  2:413073/1‑90 (MQ=255)
                                                                          aTTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGt                  <  1:5141963/91‑1 (MQ=255)
                                                                            tCGTACGCTTTTTTAATATAATACCTTTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTca                <  2:3036477/91‑1 (MQ=255)
                                                                            tCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTca                <  2:3613353/91‑1 (MQ=255)
                                                                            tCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTca                <  1:2044178/91‑1 (MQ=255)
                                                                             cGTACGCTTTTTTAATATAATACCTGCTTCACTAATGAACGTCTTAAGTATCTTCATCATTAACTGAAACTACCGTAATAATACTCCTcaa               >  2:3196964/1‑91 (MQ=255)
                                                                              gtacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTcaac              <  1:1934293‑M2/79‑1 (MQ=255)
                                                                              gtacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTcaac              <  1:4621606‑M2/79‑1 (MQ=255)
                                                                              gtacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTcaac              <  2:3775269‑M2/79‑1 (MQ=255)
                                                                               tacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaataa                         <  1:796276‑M2/68‑1 (MQ=255)
                                                                               tacgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTcaaca             <  2:10496‑M2/80‑1 (MQ=255)
                                                                                 cgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATGCTCGTCAACAat           >  2:4473381‑M2/10‑91 (MQ=255)
                                                                                 cgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat           >  2:1495193‑M2/10‑91 (MQ=255)
                                                                                 cgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat           >  1:2412030‑M2/10‑91 (MQ=255)
                                                                                 cgcttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat           >  2:465825‑M2/10‑91 (MQ=255)
                                                                                   cttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat         <  2:5770579‑M2/84‑1 (MQ=255)
                                                                                   cttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat         >  2:1894425‑M2/8‑91 (MQ=255)
                                                                                    ttttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATAtt        >  1:3092850‑M2/7‑91 (MQ=255)
                                                                                      ttttAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAg      <  2:2633547‑M2/87‑1 (MQ=255)
                                                                                          |                                                                                          
CTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATA  >  CP000731/11940‑12120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.