BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	119 (0.960)	50 (0.570) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	11/182	NT	37.7%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	2478252 =	115 (0.920)	50 (0.570) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	11/182	NT	37.7%	intergenic (+139/‑436)	USA300HOU_RS12760/USA300HOU_RS12765	hypothetical protein/hypothetical protein

Only 100 of 190 total aligned reads displayed.

TTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACT  >  USA300TCH1516_ALE/1205187‑1205463

ttAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa                                                                                                                                          <  2:320383/141‑1 (MQ=255)

  aaGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAcc                                                                                                                                        <  1:796588/141‑1 (MQ=255)

   aGTGTAGACGATTCATATTTTTTTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAccc                                                                                                                                       <  1:555162/141‑1 (MQ=255)

     ggtACACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcat                                                                                                                                     <  4:191529/140‑1 (MQ=255)

       tAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca                                                                                                                                   >  1:404221/1‑141 (MQ=255)

          aCGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCATCCTAGGAAGGGACCCAtcatca                                                                                                                                <  1:254349/141‑1 (MQ=255)

             aTTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaa                                                                                                                             <  1:717039/141‑1 (MQ=255)

               tCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt                                                                                                                           <  4:7551/141‑1 (MQ=255)

                cATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                          <  4:229659/141‑1 (MQ=255)

                     cTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTAGTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtt                                                                                                                     <  3:236726/141‑1 (MQ=255)

                             tttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAt                                                                                                             >  3:213618/1‑141 (MQ=255)

                               tAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAttt                                                                                                           <  1:220599/141‑1 (MQ=255)

                                aaaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatag                                                                                                          <  1:1016028‑M1/141‑37 (MQ=255)

                                 tttttttttAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGTTGAGTCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                         >  2:878963/6‑141 (MQ=255)

                                 aaGTATTTGAAAGGAAAAGTACATGTTAATACGTAGTATTAGTGGCGATTCTCCTGAGGCAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACTTTAGGAAagcgaagccattcaatacgaagaatggtataaataga                                                                                                         >  2:407105‑M1/1‑104 (MQ=255)

                                 aaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaataga                                                                                                         >  1:970981‑M1/1‑104 (MQ=255)

                                 aaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                         <  2:960079/141‑1 (MQ=255)

                                 aaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                         <  2:311480/141‑1 (MQ=255)

                                 aaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                         <  2:463269/141‑1 (MQ=255)

                                  aGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTAc                                                                                                        >  2:195378/1‑141 (MQ=255)

                                   gTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagaga                                                                                                       >  3:217586‑M1/1‑102 (MQ=255)

                                      tttAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTa                                                                                                    >  3:218194/1‑141 (MQ=255)

                                         aaaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagca                                                                                                 >  1:204193‑M1/1‑96 (MQ=255)

                                          aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcag                                                                                                >  1:1067824‑M1/1‑95 (MQ=255)

                                          aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt                                                                                                >  4:284773/1‑141 (MQ=255)

                                           aaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagt                                                                                               >  2:841826‑M1/1‑94 (MQ=255)

                                           aaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                                                                               >  1:474176/1‑141 (MQ=255)

                                            aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagta                                                                                              <  2:627695‑M1/141‑49 (MQ=255)

                                            aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagta                                                                                              <  3:201421‑M1/141‑49 (MQ=255)

                                            aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagta                                                                                              >  1:893813‑M1/1‑93 (MQ=255)

                                            aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc                                                                                              >  1:737628/1‑141 (MQ=255)

                                             gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa                                                                                             <  1:907819‑M1/141‑50 (MQ=255)

                                             gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa                                                                                             <  2:432538‑M1/141‑50 (MQ=255)

                                             gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa                                                                                             <  2:1078925‑M1/141‑50 (MQ=255)

                                             gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa                                                                                             >  2:898650‑M1/1‑92 (MQ=255)

                                             gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaaggattgtataaatagagaacagcagtaa                                                                                             >  2:1055992‑M1/1‑92 (MQ=255)

                                              tAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaag                                                                                            <  3:411688‑M1/141‑51 (MQ=255)

                                               aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaaga                                                                                           >  1:115970‑M1/1‑90 (MQ=255)

                                               aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAACTTCTATTTATAGAATTTTACAGTAATGTGCCAg                                                                                           <  1:561197/141‑1 (MQ=255)

                                                aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat                                                                                          <  1:532987‑M1/141‑53 (MQ=255)

                                                aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat                                                                                          <  3:178469‑M1/141‑53 (MQ=255)

                                                aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat                                                                                          >  1:427149‑M1/1‑89 (MQ=255)

                                                 aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata                                                                                         <  3:39779‑M1/141‑54 (MQ=255)

                                                 aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata                                                                                         >  1:825850‑M1/1‑88 (MQ=255)

                                                 aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata                                                                                         >  1:357819‑M1/1‑88 (MQ=255)

                                                 aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGAt                                                                                         <  1:295341/141‑1 (MQ=255)

                                                    tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                                                                      <  4:349077/141‑1 (MQ=255)

                                                    tACATGGTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCAACATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                                                                      <  2:737294/141‑1 (MQ=255)

                                                    gaCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACTCTAGGAATGGACGCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATgtg                                                                                      <  4:455518/140‑3 (MQ=255)

                                                       aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCAt                                                                                   >  2:477892/1‑141 (MQ=255)

                                                        tGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATa                                                                                  <  3:226252/141‑1 (MQ=255)

                                                         ggtaaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACACTAGGAAagcgaagccattcaatacgaagtattgtataaatagagagcagcagtaagataattttcaa                                                                                 <  2:680228‑M1/139‑62 (MQ=255)

                                                         gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaa                                                                                 <  1:3638‑M1/141‑62 (MQ=255)

                                                          ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                                                                                <  4:279813/141‑1 (MQ=255)

                                                           tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg                                                                               <  2:1045694/141‑1 (MQ=255)

                                                           tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTCGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaatt                                                                               <  3:155162‑M1/141‑64 (MQ=255)

                                                              tACGTAGTATTAATGGCTAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATGCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                                                                            <  3:377376/141‑1 (MQ=255)

                                                               aCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGc                                                                           <  1:768688/141‑1 (MQ=255)

                                                                 ttagtatTAAGGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaa                                                                         <  2:602612‑M1/140‑70 (MQ=255)

                                                                  tagtaTTACTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                                                                        <  4:365624/141‑1 (MQ=255)

                                                                  tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaat                                                                        <  3:439114‑M1/141‑71 (MQ=255)

                                                                  tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaat                                                                        <  2:980299‑M1/141‑71 (MQ=255)

                                                                  tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                                                                        >  1:508900/1‑141 (MQ=255)

                                                                    gtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatat                                                                      <  4:148451‑M1/141‑73 (MQ=255)

                                                                      aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatgattttcaattagaaaatatct                                                                    <  2:290714‑M1/141‑75 (MQ=255)

                                                                        tAATGGCGAGACTCCTGAGTGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                  <  1:1043172/141‑1 (MQ=255)

                                                                        tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                  <  4:120188/141‑1 (MQ=255)

                                                                          aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattaatactacgtattaacatgtaattttactttgaaatactttaaaaaaataagacactttgcccaac                                                                >  1:346866‑M1/1‑63 (MQ=255)

                                                                                acaCTCCTGAGGGAGCAGTGCCAGTCGAACACCGAGCCTAAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAAAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAt                                                          <  4:263199/139‑1 (MQ=255)

                                                                                  aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTg                                                        <  4:443938/141‑1 (MQ=255)

                                                                                  aCTCCTGAGCGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACAATACTTCGTATTg                                                        <  4:304304/141‑1 (MQ=18)

                                                                                    tCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGta                                                      >  2:1086382/1‑141 (MQ=255)

                                                                                      cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtata                                                    <  3:61138/141‑1 (MQ=255)

                                                                                        gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                                  >  1:849482/1‑141 (MQ=255)

                                                                                           ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                               <  1:1016699/141‑1 (MQ=255)

                                                                                           ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                               <  1:619607/141‑1 (MQ=255)

                                                                                           ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                               <  1:185962/141‑1 (MQ=255)

                                                                                               cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGaa                                           >  2:614048/1‑141 (MQ=255)

                                                                                               cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGaa                                           >  2:784758/1‑141 (MQ=255)

                                                                                                 gTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAca                                         >  1:75547/1‑141 (MQ=255)

                                                                                                   gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAcagc                                       <  3:136565/141‑1 (MQ=255)

                                                                                                   gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCAGCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATGGTATAAATAGAGAAcagc                                       >  4:126359/1‑141 (MQ=255)

                                                                                                   gCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatcttactgctgttctctatttatacaatactt                                       <  3:68874‑M1/141‑104 (MQ=255)

                                                                                                     cAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAcagcag                                     <  1:1079370/141‑1 (MQ=255)

                                                                                                           aaGACCGAGGCTGAGACTGCACCCTAGGAATAAACCAATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAt                               <  2:1008969/141‑1 (MQ=14)

                                                                                                               ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtt                           >  2:243380/1‑141 (MQ=38)

                                                                                                                cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAttt                          <  2:499796/141‑1 (MQ=38)

                                                                                                                 gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAGATAGAGAACAGCAGTAAGATAAtttt                         >  2:205221/1‑141 (MQ=38)

                                                                                                                 gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtttt                         >  4:180765/1‑141 (MQ=38)

                                                                                                                  aGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatcttactgctgttctctatttatacaatacttcgtattgaatggctt                        <  1:690245‑M1/141‑119 (MQ=255)

                                                                                                                          aCGGGACACTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaa                <  4:401164/141‑1 (MQ=255)

                                                                                                                          aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaa                <  2:1058908/141‑1 (MQ=40)

                                                                                                                          aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaa                >  3:346242/1‑141 (MQ=255)

                                                                                                                           cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATGTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaaa               >  2:197793/1‑141 (MQ=255)

                                                                                                                             gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAATAGCAGTAAGATAATTTTTAATTAGAAAat             >  4:140347/1‑141 (MQ=255)

                                                                                                                               aCCCTAGGAAagcgaagccattcaatacgaagtattaacatgtaattttactttgaaatacttaaaaaaataaaacactttgcccaacttacactaccaatagaaactgctgttagaattcctcaaaatgatatttcgcga           <  3:352213‑M1/141‑132 (MQ=255)

                                                                                                                               aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAatat           >  4:331904/1‑141 (MQ=255)

                                                                                                                               aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAatat           >  1:154244/1‑141 (MQ=255)

                                                                                                                                       aaGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtactac   >  2:975624/1‑141 (MQ=255)

                                                                                                                                        aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTactact  >  2:385645/1‑141 (MQ=255)

TTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACT  >  USA300TCH1516_ALE/1205187‑1205463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.