BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1619594 =	96 (0.770)	6 (0.050)	5/244	NT	5.9%	coding (813/816 nt)	proC	Pyrroline‑5‑carboxylate reductase
*	?	USA300TCH1516_ALE	1619661 =	102 (0.870)	6 (0.050)	5/244	NT	5.9%	intergenic (+64/+41)	proC/rnz	Pyrroline‑5‑carboxylate reductase/Ribonuclease Z

Only 100 of 136 total aligned reads displayed.

AGAAAAAATATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAA  >  USA300TCH1516_ALE/1619454‑1619734

aagacagaggatcgaaatgaaatttatcaaacattgatacagaatgaagatacacctaattttaattttgtaaaagattttgagagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaatta                                                                                                                                              >  2:390488‑M1/141‑141 (MQ=255)

aGAAAAAATATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCaa                                                                                                                                              >  2:577987/1‑141 (MQ=255)

 gAAAAAATATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAAt                                                                                                                                             >  2:85231/1‑141 (MQ=255)

 gAAAAAATATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAAt                                                                                                                                             >  4:112279/1‑141 (MQ=255)

 atacagaagatataaatgaaatttatcaaacattgatacaaaatgaagatacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattat                                                                                                                                             >  2:623808‑M1/140‑141 (MQ=255)

 atacagaagatataaatgaaatttatcaaacattgatacaaaatgaagatacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatacttgccaaataacaataaattat                                                                                                                                             <  1:828941‑M1/2‑1 (MQ=255)

  aaaaaaTATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATa                                                                                                                                            >  1:1071429/1‑141 (MQ=255)

  aaaaaaTATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATa                                                                                                                                            >  2:124036/1‑141 (MQ=255)

   aaaaaTATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATaa                                                                                                                                           <  1:799492/141‑1 (MQ=255)

    cagaagatataaatgaaatttatcaaacattgatacaaaatgaagatacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATaaa                                                                                                                                          <  4:206320‑M1/5‑1 (MQ=255)

    aaaaTATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATaaa                                                                                                                                          >  1:591652/1‑141 (MQ=255)

      gaagatataaatgaaatttatcaaacattgatacaaaatgaagatacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATaaaaa                                                                                                                                        <  2:223837‑M1/7‑1 (MQ=255)

      gaagatataaatgaaatttatcaaacattgatacaaaatgaagatacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATaaaaa                                                                                                                                        <  2:223609‑M1/7‑1 (MQ=255)

       atatTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAaaac                                                                                                                                       <  4:180397/141‑1 (MQ=255)

          ttACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAA                                                                                                                                    >  2:666464‑M1/1‑141 (MQ=255)

           tACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAAC                                                                                                                                   >  2:298875‑M1/1‑141 (MQ=255)

           tACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTGCGAAGAGTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATCGAAGACCAATAAAAACAAAC                                                                                                                                   >  4:212280‑M1/1‑141 (MQ=255)

                          tACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAATGCTGCCGTCGACCGTAGTATTGAACTTTCTAATGTAGAAGACCAATAAAAACAAACCCGCCAACACATGTa                                                                                                                    <  1:391433/141‑1 (MQ=255)

                            cGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATg                                                                                                                  >  4:266223/1‑141 (MQ=255)

                              acacAAGCTGGCCTTGATAGATTGTCACAGTATGAGCTAGGACCTATGGTCGAAGGTTTTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGca                                                                                                                <  1:914906/141‑1 (MQ=255)

                                 caAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGcatca                                                                                                             <  1:578911/141‑1 (MQ=255)

                                 caAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGcatca                                                                                                             >  3:206320/1‑141 (MQ=255)

                                  aaGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGcatcat                                                                                                            >  2:1072026/1‑141 (MQ=255)

                                   aGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCatcatc                                                                                                           >  1:846420/1‑141 (MQ=255)

                                    gCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAATGCTGCCGTCGACCGTAGTATTGAACTTTCTAATGTAGAATACCAATAAAAACAAACCCGCCAACACATGTATGCatcatca                                                                                                          >  4:130018/1‑140 (MQ=255)

                                    gCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCg                                                                                                          >  2:94101/1‑141 (MQ=255)

                                       ggCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCaa                                                                                                       >  2:691695/1‑141 (MQ=255)

                                              aagatacgcctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAATAACCCGTCAAACACATGTATGCATCATCGCAAGCACtgt                                                                                                >  4:258937‑M1/95‑141 (MQ=255)

                                                aCATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGtcaaacacagtgcttgcgatgatgcatacatgtg                                                                                              <  3:112279‑M1/141‑35 (MQ=255)

                                                 atacacctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAATAA‑CCCGCCAACACATGTATGCATCATCGCAAGCACTGTGttt                                                                                            >  3:86964‑M1/92‑141 (MQ=255)

                                                    tGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGtcaaacacagtgcttgcgatgatgcatacatgtgttgg                                                                                          <  2:464909‑M1/141‑39 (MQ=255)

                                                    tGTCACAATATGATTTAGTATCTATTTTCGAAGAGTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGa                                                                                          <  2:597449/141‑1 (MQ=255)

                                                      tCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcg                                                                                        >  1:899539‑M2/1‑139 (MQ=255)

                                                       ctaattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAATAA‑CCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACggg                                                                                      >  2:1020684‑M1/86‑141 (MQ=255)

                                                        taattttaattttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACggg                                                                                      >  1:344331‑M1/85‑141 (MQ=255)

                                                        acaATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcggg                                                                                      <  2:362409‑M2/141‑5 (MQ=255)

                                                         caATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcgggt                                                                                     >  1:738163‑M2/1‑136 (MQ=255)

                                                            tatGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAt                                                                                  >  1:670795/1‑141 (MQ=255)

                                                              tGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAttt                                                                                >  4:369262/1‑141 (MQ=255)

                                                               gATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAtttt                                                                               >  2:916241/1‑141 (MQ=255)

                                                               gATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAtttt                                                                               <  1:523139/141‑1 (MQ=255)

                                                                aTTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTCTTGAACTTTCTAATATAGAAGACCAATAAAATCAACCCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAttttt                                                                              <  1:264046/141‑1 (MQ=255)

                                                                 tttAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTta                                                                             >  1:411689/1‑141 (MQ=255)

                                                                 tttAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTta                                                                             >  1:411644/1‑141 (MQ=255)

                                                                 tttAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTta                                                                             >  2:257804/1‑141 (MQ=255)

                                                                  tttgtaaaagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTtat                                                                            >  3:345778‑M1/75‑141 (MQ=255)

                                                                  ttAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTtat                                                                            <  1:841030/141‑1 (MQ=255)

                                                                  ttAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTtat                                                                            <  4:357800/141‑1 (MQ=255)

                                                                    aGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATaa                                                                          <  3:86985/141‑1 (MQ=255)

                                                                       aTCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAAttt                                                                       <  1:617959/141‑1 (MQ=255)

                                                                        tCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTa                                                                      >  2:736058/1‑141 (MQ=255)

                                                                         aagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAt                                                                     >  2:398487‑M1/68‑141 (MQ=255)

                                                                          tATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAtt                                                                    <  1:727735/141‑1 (MQ=255)

                                                                            ttttCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGt                                                                  <  2:346818/141‑1 (MQ=255)

                                                                               tCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAt                                                               <  1:298875/141‑1 (MQ=255)

                                                                                cGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAtt                                                              >  2:1048498/1‑141 (MQ=255)

                                                                                   aGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTgg                                                           >  2:776033/1‑141 (MQ=255)

                                                                                    gATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGc                                                          <  1:1019585/141‑1 (MQ=255)

                                                                                    gATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGc                                                          >  2:768616/1‑141 (MQ=255)

                                                                                    gATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGc                                                          >  3:12763/1‑141 (MQ=255)

                                                                                     aTTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCa                                                         <  2:606990/141‑1 (MQ=255)

                                                                                      ttGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCGCTGTGTTTGACGGGATTTTTTTATAATTTATTGTTATTTGGCaa                                                        >  1:926236/1‑141 (MQ=255)

                                                                                        gTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTGTTGTTATTTGGCAAGc                                                      <  1:1072026/141‑1 (MQ=255)

                                                                                         tCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTACTATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGcc                                                     >  3:262501/1‑140 (MQ=255)

                                                                                          cTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAACCCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                    >  2:834815/1‑141 (MQ=255)

                                                                                          cTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGGTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                    >  3:242105/1‑141 (MQ=255)

                                                                                           tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                   >  3:40364/1‑141 (MQ=255)

                                                                                           tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                   >  4:244692/1‑141 (MQ=255)

                                                                                           tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                   >  4:244709/1‑141 (MQ=255)

                                                                                           tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                   >  1:662808/1‑141 (MQ=255)

                                                                                             aaCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGt                                                 <  1:100533/141‑1 (MQ=255)

                                                                                              aCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGtt                                                >  2:81017/1‑141 (MQ=255)

                                                                                                gCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTtta                                              <  2:384137/141‑1 (MQ=255)

                                                                                                gCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTtta                                              >  1:878071/1‑141 (MQ=255)

                                                                                                  tGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttatt                                            >  3:225691/1‑141 (MQ=255)

                                                                                                    ccGTCGACCGTAGTATTGAACTTTCTAATATAGAAGAGCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTAGGCAATCATTGTttattaa                                          >  2:589524/1‑140 (MQ=255)

                                                                                                     cGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACt                                         >  2:579856/1‑141 (MQ=255)

                                                                                                      gTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACtt                                        >  1:740510/1‑141 (MQ=255)

                                                                                                       tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                       >  1:183113/1‑141 (MQ=255)

                                                                                                       tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                       >  1:183045/1‑141 (MQ=255)

                                                                                                          aCCGTAGTATCGAACTTTCTAATATAGAAGACCAATAAAACCAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTc                                    >  1:213477/1‑141 (MQ=255)

                                                                                                           ccGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTcc                                   >  1:1080294/1‑140 (MQ=255)

                                                                                                              tagtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTa                                >  2:190138/1‑141 (MQ=255)

                                                                                                               agtaTTGAACTTTCTAATGTAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCACATACA‑T‑AGTTGGACGGGTTATTTTTATAAATTATTACTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGac                             >  4:299171/1‑140 (MQ=255)

                                                                                                                   ttGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAttt                           <  1:456172/141‑1 (MQ=255)

                                                                                                                    tGAACTTTCTAAGATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAtttt                          <  1:1040336/141‑1 (MQ=255)

                                                                                                                       aCTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACATTGTCATTAGATTTTaaa                       >  1:422476/1‑141 (MQ=255)

                                                                                                                        cTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCACCACATGTATGCACCACCGCCAGCACTGCGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGActttccaa                      >  2:762588/1‑137 (MQ=255)

                                                                                                                            cTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTAt                  >  2:127855/1‑141 (MQ=255)

                                                                                                                              aaTATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCACCGCAAGCACTGTGCCTGAcgggtttgtttttattggtcttctatattagaaagttcaatactacggtcggcggcagcgtttagacaatcttc                <  2:596494‑M2/141‑75 (MQ=255)

                                                                                                                               atatAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa               <  1:822031/141‑1 (MQ=255)

                                                                                                                               atatAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa               >  2:846255/1‑141 (MQ=255)

                                                                                                                                tataGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaa              <  1:69575/141‑1 (MQ=255)

                                                                                                                                  taGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAAt            >  1:268891/1‑141 (MQ=255)

                                                                                                                                   agaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATc           >  1:622217/1‑141 (MQ=255)

                                                                                                                                   agaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATc           >  4:184871/1‑141 (MQ=255)

                                                                                                                                    gaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCt          <  1:34051/141‑1 (MQ=255)

                                                                                                                                    gaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCt          <  3:289071/141‑1 (MQ=255)

                                                                                                                                         ccAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTAc     <  4:268528/141‑1 (MQ=255)

                                                                                                                                           aaTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaa   >  1:42007/1‑141 (MQ=255)

AGAAAAAATATTACCTCTAAAGGTGGTACGACACAAGCTGGCCTTGATACATTGTCACAATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAA  >  USA300TCH1516_ALE/1619454‑1619734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.