BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1619594 =	96 (0.770)	6 (0.050)	5/244	NT	5.9%	coding (813/816 nt)	proC	Pyrroline‑5‑carboxylate reductase
*	?	USA300TCH1516_ALE	1619661 =	102 (0.870)	6 (0.050)	5/244	NT	5.9%	intergenic (+64/+41)	proC/rnz	Pyrroline‑5‑carboxylate reductase/Ribonuclease Z

Only 100 of 135 total aligned reads displayed.

AGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATATCTTCTGTATTA  >  USA300TCH1516_ALE/1619522‑1619801

    tCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTa                                                                                                                                          >  2:736058/1‑141 (MQ=255)

     aagattttgatagttttaaaatctaatgacaaagtaataaacaatgcttgccaaataacaataaattATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAt                                                                                                                                         >  2:398487‑M1/68‑141 (MQ=255)

      tATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAtt                                                                                                                                        <  1:727735/141‑1 (MQ=255)

        ttttCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGt                                                                                                                                      <  2:346818/141‑1 (MQ=255)

           tCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAt                                                                                                                                   <  1:298875/141‑1 (MQ=255)

            cGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAtt                                                                                                                                  >  2:1048498/1‑141 (MQ=255)

               aGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTgg                                                                                                                               >  3:213445/1‑141 (MQ=255)

               aGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTgg                                                                                                                               >  2:776033/1‑141 (MQ=255)

                gATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGc                                                                                                                              >  3:12763/1‑141 (MQ=255)

                gATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGc                                                                                                                              <  1:1019585/141‑1 (MQ=255)

                 aTTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCa                                                                                                                             <  1:219268/141‑1 (MQ=255)

                 aTTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCa                                                                                                                             <  2:606990/141‑1 (MQ=255)

                  ttGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCGCTGTGTTTGACGGGATTTTTTTATAATTTATTGTTATTTGGCaa                                                                                                                            >  1:926236/1‑141 (MQ=255)

                    gTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGc                                                                                                                          <  4:259976/141‑1 (MQ=255)

                     tCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTACTATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGcc                                                                                                                         >  3:262501/1‑140 (MQ=255)

                      cTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                                                                                        <  2:763512/141‑1 (MQ=255)

                      cTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGGTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                                                                                        >  3:242105/1‑141 (MQ=255)

                       tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                                                                                       >  1:662808/1‑141 (MQ=255)

                       tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                                                                                       >  4:244709/1‑141 (MQ=255)

                       tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                                                                                       >  4:244692/1‑141 (MQ=255)

                       tAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAtt                                                                                                                       >  3:40364/1‑141 (MQ=255)

                         aaCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGt                                                                                                                     <  1:100533/141‑1 (MQ=255)

                         aaCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATAATCGAAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGt                                                                                                                     >  1:614035/1‑141 (MQ=255)

                          aCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGtt                                                                                                                    >  2:81017/1‑141 (MQ=255)

                          aCGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGtt                                                                                                                    <  2:142615/141‑1 (MQ=255)

                            gCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTtta                                                                                                                  <  2:384137/141‑1 (MQ=255)

                            gCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTtta                                                                                                                  >  1:878071/1‑141 (MQ=255)

                             cTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttat                                                                                                                 <  4:12763/141‑1 (MQ=255)

                              tGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttatt                                                                                                                >  4:236827/1‑141 (MQ=255)

                              tGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttatt                                                                                                                >  3:225691/1‑141 (MQ=255)

                                ccGTCGACCGTAGTATTGAACTTTCTAATATAGAAGAGCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTAGGCAATCATTGTttattaa                                                                                                              >  2:589524/1‑140 (MQ=255)

                                   tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                                                                                           >  1:183113/1‑141 (MQ=255)

                                   tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                                                                                           >  1:183045/1‑141 (MQ=255)

                                       ccGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTcc                                                                                                       >  1:1080294/1‑140 (MQ=255)

                                         gtagtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAtt                                                                                                     <  1:881241/141‑1 (MQ=255)

                                          tagtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTa                                                                                                    >  2:190138/1‑141 (MQ=255)

                                           agtaTTGAACTTTCTAATGTAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCACATACA‑T‑AGTTGGACGGGTTATTTTTATAAATTATTACTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGac                                                                                                 >  4:299171/1‑140 (MQ=255)

                                               ttGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAttt                                                                                               <  1:456172/141‑1 (MQ=255)

                                                tGAACTTTCTAAGATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAtttt                                                                                              <  1:1040336/141‑1 (MQ=255)

                                                   aCTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACATTGTCATTAGATTTTaaa                                                                                           >  1:422476/1‑141 (MQ=255)

                                                    cTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCACCACATGTATGCACCACCGCCAGCACTGCGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGActttccaa                                                                                          >  2:762588/1‑137 (MQ=255)

                                                        cTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTAt                                                                                      >  2:672064/1‑141 (MQ=255)

                                                        cTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTAt                                                                                      >  2:127855/1‑141 (MQ=255)

                                                         tAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                                                                                     <  1:415658/141‑1 (MQ=255)

                                                           atatAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa                                                                                   >  2:846255/1‑141 (MQ=255)

                                                           atatAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa                                                                                   <  1:822031/141‑1 (MQ=255)

                                                            tataGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaa                                                                                  <  1:69575/141‑1 (MQ=255)

                                                             ataGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaaa                                                                                 <  2:971853/141‑1 (MQ=255)

                                                              taGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAAt                                                                                >  2:238383/1‑141 (MQ=255)

                                                              taGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAAt                                                                                >  1:268891/1‑141 (MQ=255)

                                                              taGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAAt                                                                                >  2:322876/1‑141 (MQ=255)

                                                               agaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATc                                                                               >  4:184871/1‑141 (MQ=255)

                                                               agaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATc                                                                               >  1:622217/1‑141 (MQ=255)

                                                                gaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑t                                                                             <  1:34051/141‑1 (MQ=255)

                                                                 ataaattataaaaataacccgtcaaacacagtgcttgcgatgatgcatacatgtgttggcgggtttgtttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑tt                                                                            >  2:398487‑M2/75‑141 (MQ=255)

                                                                     ccAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTAc                                                                        <  4:268528/141‑1 (MQ=255)

                                                                     ccAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTAc                                                                        >  2:388151/1‑141 (MQ=255)

                                                                        ataaaaataacccgtcaaacacagtgcttgcgatgatgcatacatgtgttggcgggtttgtttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACaaa                                                                     >  3:345778‑M2/68‑141 (MQ=255)

                                                                        ATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACaaa                                                                     <  2:873006‑M1/141‑1 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTtacaacat                                                                   <  1:223609‑M1/141‑4 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAAt                                                                   >  2:539209‑M1/1‑141 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAAt                                                                   <  1:787943‑M1/141‑1 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAAt                                                                   >  2:352415‑M1/1‑141 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAAt                                                                   <  3:6825‑M1/141‑1 (MQ=255)

                                                                          AAAAACAAACCCGCCAACACATGTATGCATAATCGCAAGCACTGTGTTTGACGGGATATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAAt                                                                   <  1:223837‑M1/141‑1 (MQ=255)

                                                                            AAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTa                                                                 >  3:276866‑M1/1‑141 (MQ=255)

                                                                            AAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTa                                                                 >  4:144492‑M1/1‑141 (MQ=255)

                                                                            AAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTa                                                                 <  4:374891‑M1/141‑1 (MQ=255)

                                                                               caaacCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACaaaattaaaa                                                              >  3:257651/1‑141 (MQ=255)

                                                                               caaacCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGACTTTAAAACTATCAAAATC‑TTTTACaaaattaaaa                                                              >  1:1005946/1‑141 (MQ=255)

                                                                               caaacCCGCCAACACATGTATGCATCATCGCAAGCACTGCGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACaaaattaaaa                                                              >  4:209637/1‑141 (MQ=255)

                                                                                  cccgtcaaacacagtgcttgcgatgatgcatacatgtgttggcgggtttgtttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAaaattaaaatta                                                           >  1:344331‑M2/58‑141 (MQ=255)

                                                                                   cccgtcaaacacagtgcttgcgatgatgcatacatgtgttggcgggttatttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAg                                                          >  2:1020684‑M2/57‑141 (MQ=255)

                                                                                   cccGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAg                                                          >  1:200615/1‑141 (MQ=255)

                                                                                     cGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGgt                                                        >  4:139627/1‑141 (MQ=255)

                                                                                       ccAACACATGTATGCATCATCACATACA‑T‑AGTTGGACGGGTTATTTTTATAAATTATTACTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGACTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTAt                                                    >  3:446287/1‑141 (MQ=255)

                                                                                         aaacacagtgcttgcgatgatgcatacatgtgttggcgggttatttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTAt                                                    >  3:86964‑M2/51‑141 (MQ=255)

                                                                                         aaCACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTAt                                                    <  1:362409/141‑1 (MQ=255)

                                                                                          acacATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATc                                                   <  2:778458/141‑1 (MQ=255)

                                                                                             caTGTATGCATCATCGCAAGCACTGTGTTTCACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTc                                                >  2:976071/1‑141 (MQ=255)

                                                                                                       tcatcGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATc                                      <  2:591652/141‑1 (MQ=255)

                                                                                                            gCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGt                                 <  1:257804/141‑1 (MQ=255)

                                                                                                                gCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGa                             >  3:380840/1‑141 (MQ=255)

                                                                                                                gCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGa                             >  1:134901/1‑141 (MQ=255)

                                                                                                                gCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGa                             <  2:695777/141‑1 (MQ=255)

                                                                                                                 cACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGAt                            >  3:394469/1‑141 (MQ=255)

                                                                                                                  aCTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATa                           >  2:90088/1‑141 (MQ=255)

                                                                                                                   cTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATaa                          >  3:366446/1‑141 (MQ=255)

                                                                                                                     gtgtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATaaa                         >  4:389528/1‑141 (MQ=255)

                                                                                                                     gtgtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAAt                        <  1:1048798/141‑1 (MQ=255)

                                                                                                                      tgtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAAtt                       <  1:666464/141‑1 (MQ=255)

                                                                                                                        tttGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTc                     <  1:368219/141‑1 (MQ=255)

                                                                                                                         ttGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCa                    >  1:1057507/1‑141 (MQ=255)

                                                                                                                           gACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGCTAAATTTCAtt                  >  2:344140/1‑141 (MQ=255)

                                                                                                                            aCGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCAttt                 <  1:787542/141‑1 (MQ=255)

                                                                                                                                    tttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATAtcttc         <  2:223837‑M2/134‑1 (MQ=255)

                                                                                                                                     ttttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATAtcttct        <  1:124036‑M2/135‑1 (MQ=255)

                                                                                                                                      tttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATATCTTCTg       <  4:206320‑M2/136‑1 (MQ=255)

                                                                                                                                      tttatAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATATCTTCTg       <  1:720677‑M2/136‑1 (MQ=255)

                                                                                                                                           aaTTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATATCTTCTGtatta  >  2:385426/1‑141 (MQ=255)

AGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATC‑TTTTACAAAATTAAAATTAGGTGTATCTTCATTTTGTATCAATGTTTGATAAATTTCATTTATATCTTCTGTATTA  >  USA300TCH1516_ALE/1619522‑1619801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.