BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1838254 =	133 (1.070)	6 (0.050)	6/238	NT	5.1%	intergenic (‑58/+49)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component
*	?	USA300TCH1516_ALE	1838290 =	100 (0.870)	6 (0.050)	6/238	NT	5.1%	intergenic (‑94/+13)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component

Only 100 of 160 total aligned reads displayed.

TCATATACCGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACAC  >  USA300TCH1516_ALE/1838114‑1838391

tCATATACCGTTAATGCAGAGACATCTAAACAACGTTCTTGACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTaaaaa                                                                                                                                            >  2:168090/1‑141 (MQ=255)

 cATATACCGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTaaaaaa                                                                                                                                           >  3:368132/1‑141 (MQ=255)

  atatACCGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTaaaaaaa                                                                                                                                          <  1:518986/141‑1 (MQ=255)

   tgataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAg                                                                                                                                         <  4:90204‑M1/4‑1 (MQ=255)

   tgataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAg                                                                                                                                         <  3:262057‑M1/4‑1 (MQ=255)

   tgataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAg                                                                                                                                         <  2:455613‑M1/4‑1 (MQ=255)

    gatcaacagaagataaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagtaattgtcggtacacacgcagagcagcttgctgatgaaatagaaaaacatttataaaatttaaacagctAAAgc                                                                                                                                        <  4:405707‑M1/5‑1 (MQ=255)

    gataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgc                                                                                                                                        <  1:886421‑M1/5‑1 (MQ=255)

     ataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcg                                                                                                                                       <  1:992944‑M1/6‑1 (MQ=255)

     ataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcg                                                                                                                                       >  1:883059‑M1/136‑141 (MQ=255)

     ataaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcg                                                                                                                                       <  1:60309‑M1/6‑1 (MQ=255)

      aCCGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAgcgc                                                                                                                                      <  1:939586/141‑1 (MQ=255)

       ccGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAACTCATTCTACTATTTGACTAAAAAAACCGCa                                                                                                                                     >  2:832821/1‑141 (MQ=255)

       ccGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCa                                                                                                                                     >  2:47417/1‑141 (MQ=255)

       ccGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCa                                                                                                                                     >  1:497383/1‑141 (MQ=255)

       aaacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCa                                                                                                                                     <  2:1001768‑M1/8‑1 (MQ=255)

        aacagaagattaaaaacgccggtgcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCaa                                                                                                                                    >  2:1084806‑M1/133‑141 (MQ=255)

         gTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCaaa                                                                                                                                   >  2:911979/1‑141 (MQ=255)

          ttAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc                                                                                                                                  <  4:160542/141‑1 (MQ=255)

          ttAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc                                                                                                                                  <  2:649820/141‑1 (MQ=255)

           tAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAcc                                                                                                                                 >  2:573940/1‑141 (MQ=255)

             aTGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCt                                                                                                                               <  2:783528/141‑1 (MQ=255)

                  gagaCATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGa                                                                                                                         >  1:105521/1‑141 (MQ=255)

                  gagaCATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGa                                                                                                                         >  4:46862/1‑141 (MQ=255)

                  gagaCATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGa                                                                                                                         >  1:503548/1‑141 (MQ=255)

                     aCATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGt                                                                                                                      >  1:808484/1‑141 (MQ=255)

                      cATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAACTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGAAAACCCTA‑TTGAAggt                                                                                                                     >  1:974429/1‑139 (MQ=255)

                      cATCAAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTAAAAAAAAAAAAAAAAAAGCGCAAACCCTA‑TTGAAGtt                                                                                                                     <  2:72502/141‑1 (MQ=255)

                       aTCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTa                                                                                                                    <  2:893902/141‑1 (MQ=255)

                         cGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGa                                                                                                                  >  1:925968/1‑141 (MQ=255)

                            aacaacGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGAttt                                                                                                               >  1:452689/1‑141 (MQ=255)

                             acaacGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTACACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTAGAATAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTg                                                                                                              <  2:714579/141‑1 (MQ=255)

                              caacGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTgc                                                                                                             >  3:418757/1‑141 (MQ=255)

                               gcagttggtgttactgttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTA‑TTGAAGTTAGATTTgcg                                                                                                            >  1:978546‑M1/110‑141 (MQ=255)

                                acGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTgcgc                                                                                                           >  1:592507/1‑141 (MQ=255)

                                acGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTgcgc                                                                                                           >  2:851796/1‑141 (MQ=255)

                                acGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTgcgc                                                                                                           >  1:1001768/1‑141 (MQ=255)

                                   ttcttcACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCttt                                                                                                        >  2:88034/1‑141 (MQ=255)

                                   ttcttcACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCttt                                                                                                        >  4:291157/1‑141 (MQ=255)

                                      ttcACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGc                                                                                                     >  1:219923/1‑141 (MQ=255)

                                       tcACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCt                                                                                                    >  4:389337/1‑141 (MQ=255)

                                           ttAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGttt                                                                                                >  3:206532/1‑141 (MQ=255)

                                             aaaaaaaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTaa                                                                                              <  3:261488/141‑1 (MQ=255)

                                             aaaaaaaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTaa                                                                                              >  4:248085/1‑141 (MQ=255)

                                               ttaatggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAt                                                                                            >  1:843759‑M1/94‑141 (MQ=255)

                                               aaaaaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATAAAAATCATAATACTATTTGACTAAAAAAAGCGCAGACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTaact                                                                                            <  2:57551/141‑3 (MQ=255)

                                                 aaatgCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAttt                                                                                          >  2:986000/5‑141 (MQ=255)

                                                  aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAtttt                                                                                         >  1:721288/1‑141 (MQ=255)

                                                  aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAtttt                                                                                         >  2:211964/1‑141 (MQ=255)

                                                   aCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑CCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtat                                                                                       >  3:246258/1‑141 (MQ=255)

                                                     gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                                      <  4:236323/141‑1 (MQ=255)

                                                     gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                                      <  2:196785/141‑1 (MQ=255)

                                                     gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                                      <  4:115692/141‑1 (MQ=255)

                                                      ccATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa                                                                                     <  3:444418/141‑1 (MQ=255)

                                                       catcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaaa                                                                                    >  1:616153/1‑141 (MQ=255)

                                                       catcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaaa                                                                                    >  2:379056/1‑141 (MQ=255)

                                                        atcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAAt                                                                                   >  1:133467/1‑141 (MQ=255)

                                                          caacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt                                                                                 <  3:245426/141‑1 (MQ=255)

                                                            acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt                                                                               <  4:315634/141‑1 (MQ=255)

                                                            acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt                                                                               <  1:690442/141‑1 (MQ=255)

                                                              atcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt                                                                             >  2:508001/1‑141 (MQ=255)

                                                                caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCa                                                                           <  4:274249/141‑1 (MQ=255)

                                                                    tAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAAttt                                                                       >  1:582357/1‑141 (MQ=255)

                                                                    tAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAAttt                                                                       <  2:226002/141‑1 (MQ=255)

                                                                     aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc                                                                      >  3:32567/1‑141 (MQ=255)

                                                                     aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc                                                                      <  1:365502/141‑1 (MQ=255)

                                                                     aaaaTTTTCGTAACAAGCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACAATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCACTTTAGCTGTTTAAATTTTATAAATGTTTTTTAATTtc                                                                      <  4:443461/141‑1 (MQ=255)

                                                                        aTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTAACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc                                                                   <  4:353693/141‑1 (MQ=255)

                                                                                cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACct                                                           <  2:1082796/141‑1 (MQ=255)

                                                                                 acaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctg                                                          <  2:720966/141‑1 (MQ=255)

                                                                                  caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                                         <  1:829275/141‑1 (MQ=255)

                                                                                  caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                                         <  1:657203/141‑1 (MQ=255)

                                                                                        ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                                         <  1:279168/135‑1 (MQ=255)

                                                                                        ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                                         >  2:279168/1‑135 (MQ=255)

                                                                                         ctcTCCATTTCTGAAAATTCAGATATAAATCATTCTACGATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt                                                  <  2:81552/139‑1 (MQ=255)

                                                                                         cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt                                                  <  4:32567/141‑1 (MQ=255)

                                                                                          aCTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtg                                                 <  1:461425/141‑1 (MQ=255)

                                                                                            tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAAAGAAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgtg                                               >  2:762370/1‑141 (MQ=255)

                                                                                                tttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                                           >  2:979065/1‑141 (MQ=255)

                                                                                                tttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                                           >  2:268309/1‑141 (MQ=255)

                                                                                                    tGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACa                                       <  2:871243/141‑1 (MQ=255)

                                                                                                     gAAAATTCAGATATAAATCATTCTACTATTTGACT‑AAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAAt                                     <  1:789636/141‑1 (MQ=255)

                                                                                                        aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATaa                                   >  1:731621/1‑141 (MQ=255)

                                                                                                        aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATaa                                   >  3:125266/1‑141 (MQ=255)

                                                                                                            cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTg                               <  4:418757/141‑1 (MQ=255)

                                                                                                             aGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGa                              >  1:773874/1‑141 (MQ=255)

                                                                                                             aGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGa                              >  2:245175/1‑141 (MQ=255)

                                                                                                               atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGt                            >  1:961919/1‑141 (MQ=255)

                                                                                                                 ataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTg                          <  1:229764/141‑1 (MQ=255)

                                                                                                                    aaTCAGTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAAt                       <  3:10511/141‑1 (MQ=255)

                                                                                                                       cactCTACTCTGTGACTACAGAAAGCGCATACCCTA‑TTGAAGTTAGATTTGCGCTCTAGCTGTTTAAATTTTATAGATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGtt                    <  2:670710/138‑1 (MQ=255)

                                                                                                                          tataaaatttaaacagctAAAGCGCAAATCTAACTTCAA‑TAGGGTTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATg                      <  3:360612‑M1/118‑1 (MQ=255)

                                                                                                                          tCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGc                 <  1:120046/141‑1 (MQ=255)

                                                                                                                                   tGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAg        <  1:911979/141‑1 (MQ=255)

                                                                                                                                   tGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGAACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAg        <  4:15296/141‑1 (MQ=255)

                                                                                                                                     aCTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTa      >  1:210489/1‑141 (MQ=255)

                                                                                                                                     aCTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTa      >  2:348314/1‑141 (MQ=255)

                                                                                                                                      cTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTaa     >  2:946983/1‑141 (MQ=255)

                                                                                                                                       tAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAac    >  2:225327/1‑141 (MQ=255)

                                                                                                                                         aaaaaaGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAacac  <  2:588457/141‑1 (MQ=255)

TCATATACCGTTAATGCAGAGACATCGAAACAACGTTCTTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACAC  >  USA300TCH1516_ALE/1838114‑1838391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.