BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1838254 =	133 (1.070)	6 (0.050)	6/238	NT	5.1%	intergenic (‑58/+49)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component
*	?	USA300TCH1516_ALE	1838290 =	100 (0.870)	6 (0.050)	6/238	NT	5.1%	intergenic (‑94/+13)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component

Only 100 of 156 total aligned reads displayed.

TTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCAATAA  >  USA300TCH1516_ALE/1838152‑1838430

 tcACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCt                                                                                                                                            >  4:389337/1‑141 (MQ=255)

  cACTTAAAAAAACGCCATCAACATCAGATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTg                                                                                                                                           <  4:18720/141‑1 (MQ=255)

  cACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTg                                                                                                                                           >  2:176363/1‑141 (MQ=255)

      tAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTTAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTa                                                                                                                                       <  2:584311/141‑1 (MQ=255)

         aaaaaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAt                                                                                                                                    >  2:801570/1‑141 (MQ=255)

         aaaaaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATAAAAATCATAATACTATTTGACTAAAAAAAGCGCAGACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTaact                                                                                                                                    <  2:57551/141‑3 (MQ=255)

           aaatgCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAttt                                                                                                                                  >  2:986000/5‑141 (MQ=255)

            aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAtttt                                                                                                                                 >  1:721288/1‑141 (MQ=255)

            aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAtttt                                                                                                                                 >  2:211964/1‑141 (MQ=255)

             aCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑CCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑t                                                                                                                              >  3:246258/1‑141 (MQ=255)

              cGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑t                                                                                                                              <  1:686862/141‑1 (MQ=255)

              cGCCATCAAAATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑t                                                                                                                              >  1:957039/1‑141 (MQ=255)

               gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑ta                                                                                                                             <  4:115692/141‑1 (MQ=255)

               gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑ta                                                                                                                             <  4:236323/141‑1 (MQ=255)

               gCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta‑ta                                                                                                                             <  1:799783/141‑1 (MQ=255)

                ccATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑Taa                                                                                                                            <  3:444418/141‑1 (MQ=255)

                 catcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑Taaa                                                                                                                           >  2:379056/1‑141 (MQ=255)

                 catcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑Taaa                                                                                                                           >  1:616153/1‑141 (MQ=255)

                  atcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAAt                                                                                                                          >  1:133467/1‑141 (MQ=255)

                  atcaacatcaaATAAAACTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAAt                                                                                                                          >  2:729468/1‑141 (MQ=255)

                     cattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctaaagcgcaaaccctattgaagttagatttgcgctttAGCTGTTTAAATTTta‑ta                                                                                                                             <  3:360612‑M2/18‑1 (MQ=255)

                     cattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctaaagcgcaaaccctattgaagttagatttgcgctttAGCTGTTTAAATTTta‑ta                                                                                                                             >  4:360612‑M2/119‑136 (MQ=255)

                      acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGttt                                                                                                                      <  2:602895/141‑1 (MQ=255)

                      acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGttt                                                                                                                      <  4:315634/141‑1 (MQ=255)

                      acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGttt                                                                                                                      <  1:690442/141‑1 (MQ=255)

                       catcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGtttt                                                                                                                     <  3:59673/141‑1 (MQ=255)

                        atcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGttttt                                                                                                                    >  2:508001/1‑141 (MQ=255)

                          caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCa                                                                                                                  <  4:274249/141‑1 (MQ=255)

                              tAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAAttt                                                                                                              >  1:582357/1‑141 (MQ=255)

                              tAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAAttt                                                                                                              <  2:226002/141‑1 (MQ=255)

                               aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTtc                                                                                                             >  3:32567/1‑141 (MQ=255)

                               aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTtc                                                                                                             <  1:365502/141‑1 (MQ=255)

                                    tttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAg                                                                                                        <  3:256027/141‑1 (MQ=255)

                                      tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCa                                                                                                      >  1:108705/1‑141 (MQ=255)

                                       cttcACACGCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCaa                                                                                                     <  1:853608/141‑1 (MQ=255)

                                          cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACct                                                                                                  <  2:1082796/141‑1 (MQ=255)

                                            caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACctgc                                                                                                <  1:829275/141‑1 (MQ=255)

                                            caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACctgc                                                                                                <  1:657203/141‑1 (MQ=255)

                                                  ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACctgc                                                                                                <  1:279168/135‑1 (MQ=255)

                                                  ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACctgc                                                                                                >  2:279168/1‑135 (MQ=255)

                                                  ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACg                                                                                          >  2:848302/1‑141 (MQ=255)

                                                  ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACg                                                                                          >  4:249249/1‑141 (MQ=255)

                                                   cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt                                                                                         <  4:32567/141‑1 (MQ=255)

                                                    aCTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtg                                                                                        <  1:461425/141‑1 (MQ=255)

                                                      tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAAAGAAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgtg                                                                                      >  2:762370/1‑141 (MQ=255)

                                                         aTTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTAGCGATTTAGAAGATTAAATTTAA‑CAAATGTTTTATAATTTCATCAGCAATTTGATGTACGTGTGTAc                                                                                   >  1:914791/1‑141 (MQ=255)

                                                          tttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                                                                                  >  2:979065/1‑141 (MQ=255)

                                                             cTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAc                                                                               <  1:886684/141‑1 (MQ=255)

                                                             cTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAc                                                                               >  4:427156/1‑141 (MQ=255)

                                                              tGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACa                                                                              <  2:871243/141‑1 (MQ=255)

                                                                  aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATaa                                                                          >  1:731621/1‑141 (MQ=255)

                                                                   aTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAAc                                                                         <  2:721288/141‑1 (MQ=255)

                                                                     tCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACtt                                                                       <  4:391000/141‑1 (MQ=255)

                                                                      cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTg                                                                      <  4:418757/141‑1 (MQ=255)

                                                                       aGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGa                                                                     >  1:773874/1‑141 (MQ=255)

                                                                       aGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGa                                                                     >  2:245175/1‑141 (MQ=255)

                                                                           ataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTg                                                                 <  1:229764/141‑1 (MQ=255)

                                                                              aaTCAGTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAAt                                                              <  3:10511/141‑1 (MQ=255)

                                                                                 cactCTACTCTGTGACTACAGAAAGCGCATACCCTA‑TTGAAGTTAGATTTGCGCTCTAGCTGTTTAAATTTTA‑TAGATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGtt                                                           <  2:670710/138‑1 (MQ=255)

                                                                                   ttCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTg                                                         <  4:61796/141‑1 (MQ=255)

                                                                                   ttCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCGTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTg                                                         <  2:260555/141‑1 (MQ=255)

                                                                                    tataaaatttaaacagctAAAGCGCAAATCTAACTTCAA‑TAGGGTTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATg                                                             <  3:360612‑M1/118‑1 (MQ=255)

                                                                                    tataaaatttaaacagctAAAGCGCAAATCTAACTTCAA‑TAGGGTTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATg                                                             >  4:360612‑M1/19‑136 (MQ=255)

                                                                                      tactaTTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCa                                                      >  3:23540/1‑141 (MQ=255)

                                                                                           atttaaacagctaaagcgcaaatctaacttcaatagggtttgcgctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTaa                                                  >  1:843759‑M2/49‑141 (MQ=255)

                                                                                               aCTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTa                                             >  1:210489/1‑141 (MQ=255)

                                                                                               aCTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTa                                             >  2:348314/1‑141 (MQ=255)

                                                                                                cTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTaa                                            >  2:946983/1‑141 (MQ=255)

                                                                                                 tAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAac                                           >  2:225327/1‑141 (MQ=255)

                                                                                                         GCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTGGCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTg                                   >  1:267681‑M1/1‑141 (MQ=255)

                                                                                                          CGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  <  4:307681‑M1/141‑1 (MQ=255)

                                                                                                          CGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  <  3:149060‑M1/141‑1 (MQ=255)

                                                                                                          CGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  <  3:23735‑M1/141‑1 (MQ=255)

                                                                                                          CGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  <  1:642629‑M1/141‑1 (MQ=255)

                                                                                                          CGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTCTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  <  2:431935‑M1/141‑1 (MQ=255)

                                                                                                           cgcaaatctaacttcaatagggtttgcgctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGc                                  >  1:978546‑M2/33‑141 (MQ=255)

                                                                                                           GCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCa                                 >  2:108705‑M1/1‑141 (MQ=255)

                                                                                                           GCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCa                                 >  2:292922‑M1/1‑141 (MQ=255)

                                                                                                            CAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCAc                                <  2:1057849‑M1/141‑1 (MQ=255)

                                                                                                            CAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCAc                                <  1:566117‑M1/141‑1 (MQ=255)

                                                                                                            CAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCAc                                <  1:592176‑M1/141‑1 (MQ=255)

                                                                                                              AACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAAGAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCg                              >  2:17145‑M1/1‑141 (MQ=255)

                                                                                                                cccTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGc                            <  1:1058858/141‑1 (MQ=255)

                                                                                                                 ccTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCg                           <  2:541085/141‑1 (MQ=255)

                                                                                                                    a‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑CAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGttt                        >  1:574447/1‑141 (MQ=255)

                                                                                                                       tGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGttttt                      <  1:986000/141‑1 (MQ=255)

                                                                                                                        gAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTa                     <  2:415128/141‑1 (MQ=255)

                                                                                                                            ttAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAAtct                 <  1:827535/141‑1 (MQ=255)

                                                                                                                            ttAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAAtct                 <  2:631210/141‑1 (MQ=255)

                                                                                                                             tAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAAtctt                <  2:125722/141‑1 (MQ=255)

                                                                                                                               gATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAAtcttct              <  1:775411/141‑1 (MQ=255)

                                                                                                                               gATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAAtcttct              >  2:389919/1‑141 (MQ=255)

                                                                                                                                  ttgcgctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGtt           <  3:152999‑M2/132‑1 (MQ=255)

                                                                                                                                     cgctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTAt        <  1:60309‑M2/135‑1 (MQ=255)

                                                                                                                                     cgctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTAt        <  1:992944‑M2/135‑1 (MQ=255)

                                                                                                                                      gctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATc       <  1:886421‑M2/136‑1 (MQ=255)

                                                                                                                                       ctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCa      <  1:502314‑M2/137‑1 (MQ=255)

                                                                                                                                       ctttAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCa      <  3:262057‑M2/137‑1 (MQ=255)

                                                                                                                                           aGCTGTTTAAATTTTATTAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCaata   >  3:137920/1‑141 (MQ=255)

                                                                                                                                           aGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCaataa  >  3:111701/1‑141 (MQ=255)

TTCACTTAAAAAAACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTA‑TTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTA‑TAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAATGTTTGCCATTAACAGTAACACCAACTGCACCGGCGTTTTTAATCTTCTGTTTATCAATAA  >  USA300TCH1516_ALE/1838152‑1838430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.