BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2248208 =	134 (1.080)	8 (0.070)	8/248	NT	6.0%	intergenic (+2/+128)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein
*	?	USA300TCH1516_ALE	2248263 =	121 (1.010)	8 (0.070)	8/248	NT	6.0%	intergenic (+57/+73)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein

Only 100 of 164 total aligned reads displayed.

TATCGGTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGT  >  USA300TCH1516_ALE/2248068‑2248348

tttaaaaactggcgtggttggtacaattgtttcagcgcaaaaattgtctaatgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaata                                                                                                                                               >  1:732304‑M1/141‑141 (MQ=255)

tatCGGTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtagaaaaatagaa                                                                                                                                               <  1:134319/141‑1 (MQ=255)

tatCGGTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtagaaaaatagaa                                                                                                                                               <  1:861199/141‑1 (MQ=255)

   aaaaactggcgtggttggtacaattgtttcagcgcaaaaattgtctaatgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaataaaa                                                                                                                                            <  2:927870‑M1/4‑1 (MQ=255)

    ggTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTGGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAg                                                                                                                                           >  3:350961/1‑141 (MQ=255)

     gTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGa                                                                                                                                          <  1:618804/141‑1 (MQ=255)

          tcatttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAtt                                                                                                                                     <  1:847284/141‑1 (MQ=255)

          tcatttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAtt                                                                                                                                     >  3:400489/1‑141 (MQ=255)

           catttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAttt                                                                                                                                    >  3:140020/1‑141 (MQ=255)

             tttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTtat                                                                                                                                  >  1:19926/1‑141 (MQ=255)

             tttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTtat                                                                                                                                  >  2:869025/1‑141 (MQ=255)

              ttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTtata                                                                                                                                 >  3:168003/1‑141 (MQ=255)

              ttcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTtata                                                                                                                                 >  4:422716/1‑141 (MQ=255)

               tcatAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTatat                                                                                                                                >  1:907538/1‑141 (MQ=255)

                  taataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGGTAAATAGAAAAAGACCATTTATATgcg                                                                                                                             <  4:305447/141‑1 (MQ=255)

                  taataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGGTAAATAGAAAAAGACCATTTATATgcg                                                                                                                             <  1:13775/141‑1 (MQ=255)

                  taataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcg                                                                                                                             >  1:104814/1‑141 (MQ=255)

                  taataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcg                                                                                                                             >  2:250229/1‑141 (MQ=255)

                  taataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATAAAAAAAAAAATAGAAAAAGACCATTTATATgcg                                                                                                                             <  2:238643/141‑1 (MQ=255)

                    ataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGcgcg                                                                                                                           <  1:707313/141‑1 (MQ=255)

                    ataaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGcgcg                                                                                                                           <  3:163104/141‑1 (MQ=255)

                      aaCGCTTTATTACGCAAAGTTGTGGAAGATTATATTGGGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgtt                                                                                                                         <  2:53657/141‑1 (MQ=255)

                      aaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGGTAAATAGAAAAAGACCATTTATATGCGCgtt                                                                                                                         >  1:960942/1‑141 (MQ=255)

                      aaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgtt                                                                                                                         >  1:814154/1‑141 (MQ=255)

                      aaCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgtt                                                                                                                         >  3:57671/1‑141 (MQ=255)

                       aCGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttg                                                                                                                        >  3:302745/1‑141 (MQ=255)

                         gCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgtt                                                                                                                      >  2:331186/1‑141 (MQ=255)

                         gCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTAAAAAAAATAGAAAAAGACCATTTATATGCGCgttgtt                                                                                                                      <  4:140354/141‑1 (MQ=255)

                         gCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCACTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgtt                                                                                                                      >  1:22362/1‑141 (MQ=255)

                           tttATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAAATGTACTATGTTGAAAACGGCGCCTTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGtttt                                                                                                                    >  2:21212/1‑141 (MQ=255)

                            ttattaCGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTta                                                                                                                   <  3:209531/141‑1 (MQ=255)

                             tattaCGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaa                                                                                                                  >  3:75861/1‑141 (MQ=255)

                                 aCGCAAAGTTGTGGAAGATTATACTGTGTTACTCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                                                                              <  2:369023/141‑1 (MQ=255)

                                   gCAAAGTTGTGGAAGATTATACTGTGTTACGCGCTTGCAAACCAGACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACGATTTATATTCGCGTTTTTTtaaataaat                                                                                                            >  4:409922/1‑140 (MQ=255)

                                    cAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACg                                                                                                           >  1:997404/1‑141 (MQ=255)

                                         aattgtctaatgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtata                                                                                                      >  2:567019‑M1/100‑141 (MQ=255)

                                          attgtatcatgaacttacattttaattgaattgcgttgtaaataattaagtgataataaatggaacaatacgtattcaaaacccttagaccataaaatAACAGGCCATTTATATGAGCGTTGTTTTAAATAACCGCtatat                                                                                                     >  4:293523‑M1/99‑141 (MQ=255)

                                           gtgGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtatata                                                                                                    >  1:526845/1‑141 (MQ=255)

                                            tgtctaatgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATaa                                                                                                   >  3:195725‑M1/97‑141 (MQ=255)

                                              tctaatgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAAt                                                                                                 >  1:458997‑M1/95‑141 (MQ=255)

                                                  atgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGcc                                                                                             >  2:821383‑M1/91‑141 (MQ=255)

                                                   ttATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCt                                                                                            <  1:961752/141‑1 (MQ=255)

                                                    tataCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt                                                                                           <  3:372234/141‑1 (MQ=255)

                                                    tataCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt                                                                                           <  1:1014359/141‑1 (MQ=255)

                                                     ttaCTGTGTTACGCGGTTGCAAACCGGATTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTAGATTAAAAAAAAAAAAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt                                                                                          <  4:197365/140‑1 (MQ=255)

                                                     ataCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt                                                                                          <  2:19926/141‑1 (MQ=255)

                                                     ataCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTAAGGTGCTATTGGTGCATTATATTTAAAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt                                                                                          <  2:501698/141‑1 (MQ=255)

                                                     aacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt                                                                                          >  1:678442‑M1/88‑141 (MQ=255)

                                                       aCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtttta                                                                                        >  4:186804/1‑141 (MQ=255)

                                                         tgtgTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatt                                                                                      <  1:463127/141‑1 (MQ=255)

                                                            gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatttta                                                                                   <  4:323832/141‑1 (MQ=255)

                                                             ttACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTtttattttat                                                                                  >  3:363368/1‑141 (MQ=255)

                                                                   ggTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTa                                                                            >  2:861139/1‑141 (MQ=255)

                                                                    gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTaa                                                                           >  3:2513/1‑141 (MQ=255)

                                                                        cAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt                                                                       >  3:420058/1‑141 (MQ=255)

                                                                          aaCCGTACTATGTTGAAAACGGCGCATTGTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGttt                                                                     >  2:363069/1‑141 (MQ=255)

                                                                              gTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑Gaa                                                                <  2:616284/141‑1 (MQ=255)

                                                                              gTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑Gaa                                                                >  1:632140/1‑141 (MQ=255)

                                                                              gTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑Gaa                                                                >  2:934836/1‑141 (MQ=255)

                                                                                  tATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTTTTTTTTTTTTTTATTGTTTT‑GAATTCg                                                            >  2:919965/1‑141 (MQ=255)

                                                                                  tATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACg                                                            >  2:468300/1‑141 (MQ=255)

                                                                                  tATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACg                                                            >  1:497520/1‑141 (MQ=255)

                                                                                  tATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACg                                                            >  2:148998/1‑141 (MQ=255)

                                                                                   aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGt                                                           <  4:222716/141‑1 (MQ=255)

                                                                                   aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGt                                                           <  3:49082/141‑1 (MQ=255)

                                                                                        gAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGt                                                      >  4:161844/1‑141 (MQ=255)

                                                                                            aCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATAT‑AATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAt                                                 <  4:386370/141‑1 (MQ=255)

                                                                                              ggCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAtt                                                <  2:75873/141‑1 (MQ=255)

                                                                                               gcgcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAttt                                               >  2:308230/1‑141 (MQ=255)

                                                                                                 gcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATCAACGCTATCTAAATGGCTTTTTATCTCATGCTATAAGTGTTTT‑GAATAAGTATTGTTCCATttat                                             >  1:98998/1‑141 (MQ=255)

                                                                                                 gcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATttat                                             >  1:324238/1‑141 (MQ=255)

                                                                                                 gcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAATATTTT‑GAATACGTATTGTTCCATttat                                             >  4:120289/1‑141 (MQ=255)

                                                                                                  cATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATttatt                                            >  2:516400/1‑141 (MQ=255)

                                                                                                         aGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACtt                                     <  2:969818/141‑1 (MQ=255)

                                                                                                          ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTa                                    >  2:783149/1‑141 (MQ=255)

                                                                                                              cTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAtta                                <  3:54499/141‑1 (MQ=255)

                                                                                                              cTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAtta                                <  1:222559/141‑1 (MQ=255)

                                                                                                                 ttgtttcATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATCTAAATGGCCTTTTATTGTATAGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTAAAttactt                             <  2:634185/135‑1 (MQ=255)

                                                                                                                  tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                            >  2:635050/1‑141 (MQ=255)

                                                                                                                  tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                            >  2:423204/1‑141 (MQ=255)

                                                                                                                  tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                            <  4:244255/141‑1 (MQ=255)

                                                                                                                   ggTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttacttac                           >  4:153077/1‑141 (MQ=255)

                                                                                                                      gCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAAc                        <  2:483234/141‑1 (MQ=255)

                                                                                                                       cATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACt                       <  1:398197/141‑1 (MQ=255)

                                                                                                                          tataTTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaa                    <  1:923960/141‑1 (MQ=255)

                                                                                                                           atatTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaat                   <  2:997404/141‑1 (MQ=255)

                                                                                                                           atatTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaat                   <  1:768615/141‑1 (MQ=255)

                                                                                                                             atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattc                 >  2:759514/1‑141 (MQ=255)

                                                                                                                              tttAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattca                >  2:886828/1‑141 (MQ=255)

                                                                                                                              tatagaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattca                >  2:60939/3‑141 (MQ=255)

                                                                                                                               ttAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattcaa               <  4:57671/141‑1 (MQ=255)

                                                                                                                                  gaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTa            >  2:769531/1‑141 (MQ=255)

                                                                                                                                   aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTaa           >  2:418030/1‑141 (MQ=255)

                                                                                                                                        tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt      >  2:369887/1‑141 (MQ=255)

                                                                                                                                        tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt      >  2:251318/1‑141 (MQ=255)

                                                                                                                                        tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt      >  4:327598/1‑141 (MQ=255)

                                                                                                                                         agaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTACGTGTTTTGGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt      <  3:160679/141‑1 (MQ=255)

                                                                                                                                           aaaaaGACCATTTATATACGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTAATGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAg   <  3:962/141‑1 (MQ=255)

                                                                                                                                            AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGt  <  1:663144‑M1/141‑1 (MQ=255)

                                                                                                                                            AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGt  <  3:197415‑M1/141‑1 (MQ=255)

TATCGGTTCTTCATTTCATAATAACGCTTTATTACGCAAAGTTGTGGAAGATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGT  >  USA300TCH1516_ALE/2248068‑2248348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.