BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2248208 =	134 (1.080)	8 (0.070)	8/248	NT	6.0%	intergenic (+2/+128)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein
*	?	USA300TCH1516_ALE	2248263 =	121 (1.010)	8 (0.070)	8/248	NT	6.0%	intergenic (+57/+73)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein

Only 100 of 149 total aligned reads displayed.

ACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAAT  >  USA300TCH1516_ALE/2248123‑2248403

aCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAACAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtttta                                                                                                                                               >  2:246145/1‑141 (MQ=255)

  tgtgTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatt                                                                                                                                             <  1:463127/141‑1 (MQ=255)

    tgtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatttt                                                                                                                                           <  1:665490/141‑1 (MQ=255)

     attttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaataaaaggccatttatatagcgtttatttaaaacaacgcgcatataaatggtcttttatttta                                                                                                                                          <  2:761794‑M2/6‑1 (MQ=255)

      ttACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTtttattttat                                                                                                                                         >  3:363368/1‑141 (MQ=255)

          gcgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc                                                                                                                                     <  1:562514/141‑1 (MQ=255)

            ggTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTa                                                                                                                                   >  2:861139/1‑141 (MQ=255)

             gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTaa                                                                                                                                  >  3:2513/1‑141 (MQ=255)

                 cAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt                                                                                                                              <  3:164251/141‑1 (MQ=255)

                 cAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt                                                                                                                              <  2:1077088/141‑1 (MQ=255)

                   aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCAATAAATAAAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGttt                                                                                                                            <  2:536347/141‑1 (MQ=255)

                   aaCCGTACTATGTTGAAAACGGCGCATTGTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGttt                                                                                                                            >  2:363069/1‑141 (MQ=255)

                       gTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑Gaa                                                                                                                       <  2:616284/141‑1 (MQ=255)

                       gTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑Gaa                                                                                                                       >  1:632140/1‑141 (MQ=255)

                         aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATTGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATa                                                                                                                     <  2:473714/141‑1 (MQ=255)

                           tATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACg                                                                                                                   >  2:148998/1‑141 (MQ=255)

                            aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGt                                                                                                                  <  3:49082/141‑1 (MQ=255)

                            aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGt                                                                                                                  <  4:222716/141‑1 (MQ=255)

                            aTGTTGAAAACGGCGCATTTTCAGGTGCAATTGGTGCATTCTCTTTAGCAAACTTGACACAGGCCACTTATATTAGGGTTATTTTCATGACACTCTCTATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGt                                                                                                                  >  1:486700/1‑141 (MQ=255)

                               ttGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTAtt                                                                                                               >  1:639996/1‑141 (MQ=255)

                                 gAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGt                                                                                                             >  4:161844/1‑141 (MQ=255)

                                 gAAAACGGCGCATTTTCAGGTGCTATTAGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGt                                                                                                             <  2:829750/141‑1 (MQ=255)

                                    aaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTcc                                                                                                          <  2:925663/141‑1 (MQ=255)

                                      cGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAt                                                                                                        <  4:140020/141‑1 (MQ=255)

                                       ggCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAtt                                                                                                       <  2:75873/141‑1 (MQ=255)

                                        gcgcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCAttt                                                                                                      >  2:308230/1‑141 (MQ=255)

                                          gcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATCAACGCTATCTAAATGGCTTTTTATCTCATGCTATAAGTGTTTT‑GAATAAGTATTGTTCCATttat                                                                                                    >  1:98998/1‑141 (MQ=255)

                                           cATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATttatt                                                                                                   >  2:516400/1‑141 (MQ=255)

                                            aTTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATttatta                                                                                                  <  2:942960/141‑1 (MQ=255)

                                               ttCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCa                                                                                               <  3:355454/141‑1 (MQ=255)

                                                   ggTGCTATTGGTGCATTATATTTAGGTAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTACGTGTTTTGGAATACGTATTGTTTCATTTATTATCACtt                                                                                            >  4:317443/1‑141 (MQ=255)

                                                   ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTa                                                                                           >  2:783149/1‑141 (MQ=255)

                                                   ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTa                                                                                           >  1:1066244/1‑141 (MQ=255)

                                                      gCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAtt                                                                                        >  3:100624/1‑141 (MQ=255)

                                                          ttgtttcATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATCTAAATGGCCTTTTATTGTATAGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTAAAttactt                                                                                    <  2:634185/135‑1 (MQ=255)

                                                          ttGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactt                                                                                    <  3:148606/141‑1 (MQ=255)

                                                           tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                                                                                   <  4:244255/141‑1 (MQ=255)

                                                           tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                                                                                   >  2:635050/1‑141 (MQ=255)

                                                           tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                                                                                   >  2:423204/1‑141 (MQ=255)

                                                           tGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAAttactta                                                                                   >  3:231258/1‑141 (MQ=255)

                                                             gTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACa                                                                                 <  2:907538/141‑1 (MQ=255)

                                                               gCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAAc                                                                               <  4:302745/141‑1 (MQ=255)

                                                                cATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACt                                                                              <  1:398197/141‑1 (MQ=255)

                                                                cATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACt                                                                              <  4:423600/141‑1 (MQ=255)

                                                                   tataTTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaa                                                                           <  1:923960/141‑1 (MQ=255)

                                                                    atatTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaat                                                                          <  1:768615/141‑1 (MQ=255)

                                                                    atatTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaat                                                                          <  2:997404/141‑1 (MQ=255)

                                                                      atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattc                                                                        >  2:759514/1‑141 (MQ=255)

                                                                       tttAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattca                                                                       >  2:886828/1‑141 (MQ=255)

                                                                       tatagaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattca                                                                       >  2:60939/3‑141 (MQ=255)

                                                                        ttAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACtcaattcaa                                                                      <  4:57671/141‑1 (MQ=255)

                                                                          agaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTcaattcaatt                                                                    <  3:76511/141‑1 (MQ=255)

                                                                            aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTaa                                                                  >  2:418030/1‑141 (MQ=255)

                                                                             aaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTGTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTaaa                                                                 <  4:142738/141‑1 (MQ=255)

                                                                              aaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAATCACTAGATAAGTTGCGGTGTATGTTAGTGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTaaaa                                                                <  1:915504/141‑1 (MQ=255)

                                                                                 tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAATTGTCCTTCTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTACATTTATTATCACTTAATTACTTACAACTCAATTCATTTaaattct                                                             >  2:771699/1‑137 (MQ=255)

                                                                                 tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt                                                             >  2:238096/1‑141 (MQ=255)

                                                                                 tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt                                                             >  4:327598/1‑141 (MQ=255)

                                                                                  agaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTACGTGTTTTGGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGt                                                             <  3:160679/141‑1 (MQ=255)

                                                                                    aaaaaGACCATTTATATACGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTAATGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAg                                                          <  3:962/141‑1 (MQ=255)

                                                                                     AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGt                                                         <  3:197415‑M1/141‑1 (MQ=255)

                                                                                     AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGt                                                         <  1:366615‑M1/141‑1 (MQ=255)

                                                                                     AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGt                                                         <  2:367914‑M1/141‑1 (MQ=255)

                                                                                      aaaggccatttatatagcgtttatttaaaacaacgcgcatataaatggtcttttATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGtt                                                        >  1:678442‑M2/55‑141 (MQ=255)

                                                                                           tcATTTATATGCTTGTTGTTTTAAATAAACGCTTTATAAATGGCCTTTTATTTTATGGTCTAATTGTTTT‑AAAAACGTATTGTTCCATTTATTATCTCTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTa                                                   <  4:32487/140‑1 (MQ=255)

                                                                                           ccATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTa                                                   >  2:281231/1‑141 (MQ=255)

                                                                                            cATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAg                                                  <  4:86990/141‑1 (MQ=255)

                                                                                             atttatatagcgtttatttaaaacaacgcgcatataaatggtcttttATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGa                                                 >  1:458997‑M2/48‑141 (MQ=255)

                                                                                              tttATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGAc                                                <  3:429421/141‑1 (MQ=255)

                                                                                               ttATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATCGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACa                                               >  2:1020254/1‑141 (MQ=255)

                                                                                                tatatagcgtttatttaaaacaacgcgcatataaatggtcttttATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACaa                                              >  2:161032‑M2/45‑141 (MQ=255)

                                                                                                tataTGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACaa                                              <  1:312739/141‑1 (MQ=255)

                                                                                                tataTGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACaa                                              >  2:480769/1‑141 (MQ=255)

                                                                                                tataTGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACaa                                              >  2:139977/1‑141 (MQ=255)

                                                                                                  tatGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAAtt                                            >  2:767861/1‑141 (MQ=255)

                                                                                                    tGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAAtttt                                          >  2:963277/1‑141 (MQ=255)

                                                                                                       gcgTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTgc                                       >  1:749974/1‑141 (MQ=255)

                                                                                                         gttgttTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTACGTGTTTTGGAATACGTATTGTTTCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTgcg                                      <  1:200041/141‑1 (MQ=255)

                                                                                                            gttTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGa                                  <  1:832339/141‑1 (MQ=255)

                                                                                                              tttACATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGATCCATTTATCTTCACTTAATTACTTACAAGTCAATTCAATTAAATTGTAAGTTCATTAGACAATTTTTGCGCTGaaa                                >  4:171783/1‑141 (MQ=255)

                                                                                                               ttAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAAc                               >  2:600970/1‑141 (MQ=255)

                                                                                                                      aaCGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTa                        >  1:761889/1‑141 (MQ=255)

                                                                                                                       aCGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAGACAATTGTac                       >  1:842163/1‑141 (MQ=255)

                                                                                                                       aCGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTac                       <  1:255594/141‑1 (MQ=255)

                                                                                                                       aCGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTac                       <  1:363069/141‑1 (MQ=255)

                                                                                                                            atataAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTaccaacc                  >  3:391934/1‑141 (MQ=255)

                                                                                                                             tataAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTaccaacca                 >  2:744036/1‑141 (MQ=255)

                                                                                                                             tataAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTaccaacca                 >  3:279920/1‑141 (MQ=255)

                                                                                                                              ataAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCAc                >  3:39191/1‑141 (MQ=255)

                                                                                                                              ataAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCAc                <  4:8782/141‑1 (MQ=255)

                                                                                                                               taAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACg               <  3:271904/141‑1 (MQ=255)

                                                                                                                                 aaTGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGcc             <  4:259115/141‑1 (MQ=255)

                                                                                                                                 aaTGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGcc             <  3:202904/141‑1 (MQ=255)

                                                                                                                                 aaTGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGcc             <  1:498512/141‑1 (MQ=255)

                                                                                                                                   tGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAACCAATTGTACCAACCACGCCAg           <  1:21212/141‑1 (MQ=255)

                                                                                                                                   tGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAg           >  4:214990/1‑141 (MQ=255)

                                                                                                                                    ggCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGt          >  3:146377/1‑141 (MQ=255)

                                                                                                                                        ttttATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGttttt      <  2:927870‑M2/137‑1 (MQ=255)

                                                                                                                                           tATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTaaa   >  1:732304‑M2/2‑141 (MQ=255)

                                                                                                                                            attttatGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAAt  >  2:614979/1‑141 (MQ=255)

ACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTT‑GAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAAAT  >  USA300TCH1516_ALE/2248123‑2248403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.