New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2636366100 (0.800)4 (0.040) 4/236 NT 3.9% intergenic (‑419/+50) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter
?USA300TCH1516_ALE = 2636392 107 (0.940)intergenic (‑445/+24) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 154 total aligned reads displayed.

TTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTT  >  USA300TCH1516_ALE/2636226‑2636505
                                                                                                                                            |                                                                                                                                            
 ttCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTc                                                                                                                                             >  2:1073404/1‑141 (MQ=255)
 ttCATAATCATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGGTTc                                                                                                                                             >  2:390368/1‑141 (MQ=255)
   cATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCaa                                                                                                                                           >  3:338721/1‑141 (MQ=255)
   cATAAATATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAACAATAAACGNTTTTCaa                                                                                                                                           >  2:815810/1‑141 (MQ=255)
    aTAATTATCGCCTGTACAATACGCACAAAAACATTTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAg                                                                                                                                          <  1:1007303/141‑1 (MQ=255)
     tAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAgg                                                                                                                                         <  3:32226/141‑1 (MQ=255)
      aaTTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                                                                                        <  1:517111/141‑1 (MQ=255)
              ccTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATAtt                                                                                                                                >  1:280070/1‑141 (MQ=255)
               ctctataaTACTTACAAATACATGTCTTGATACGTCTTTCATCACTATAAATTACCAAATATACTTTTTATAACATTCGGATTCTTAGTATTTCATACTATTTTCTACATAAAAATAAACGTGTTTCAAGTCAATATATTg                                                                                                                               <  4:415374/135‑1 (MQ=255)
               cTGTACAATACGCACAGAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTCAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTg                                                                                                                               <  4:404265/141‑1 (MQ=255)
               cTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTg                                                                                                                               >  1:672866/1‑141 (MQ=255)
                 gTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCa                                                                                                                             <  2:567031/141‑1 (MQ=255)
                 gTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCa                                                                                                                             >  1:991371/1‑141 (MQ=255)
                      aTACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAc                                                                                                                        >  4:138459/1‑141 (MQ=255)
                        aCGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCt                                                                                                                      >  3:422799/1‑141 (MQ=255)
                           cacaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAa                                                                                                                  <  1:42397‑M2/141‑2 (MQ=255)
                           cacaAAAACATGTCTTGAAACGACTATTATTACTCTAAAATACCCAATATACTTTTTATGTCTTTTTGATTCTGATGATTGGAGACGAGTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATAGTGTAATTAcaaaaa                                                                                                                   >  2:763441/1‑136 (MQ=255)
                            acaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaa                                                                                                                 <  2:611945‑M2/141‑3 (MQ=255)
                             caAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                <  2:564392‑M2/141‑4 (MQ=255)
                             caAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                <  2:564317‑M2/141‑4 (MQ=255)
                             aaaaaacATGTCTTGAAACGCCTTTCATAACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                >  2:1043033‑M2/2‑138 (MQ=255)
                              aaaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaac                                                                                                               >  2:424759‑M2/1‑137 (MQ=255)
                               aaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaaca                                                                                                              <  1:133998‑M2/141‑6 (MQ=255)
                                aaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacac                                                                                                             <  2:83458‑M2/141‑7 (MQ=255)
                                 aaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTttaggtaattgcaatatattgccttgaaacacg                                                                                                             <  2:187891‑M1/141‑34 (MQ=255)
                                    aTGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTttaggtaattgcaatatattgccttgaaacacgttt                                                                                                          <  4:4028‑M1/141‑37 (MQ=255)
                                    aTGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgttt                                                                                                         <  4:298994‑M2/141‑11 (MQ=255)
                                     tGTCTTGAAACGCCTTTCATCACTCTAACATCCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTttaggtaattgcaatatattgccttgaaacacgttta                                                                                                         <  2:1084095‑M1/141‑38 (MQ=255)
                                       tCTTGAAACGCCTTTCATCACTCTAAAATACCCTATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                      <  2:57530/141‑1 (MQ=255)
                                       tCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                      >  1:498010/1‑141 (MQ=255)
                                       tCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                      >  3:414809/1‑141 (MQ=255)
                                        cTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACtt                                                                                                     <  1:357694/141‑1 (MQ=255)
                                        cTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACtt                                                                                                     <  2:442876/141‑1 (MQ=255)
                                           gAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAat                                                                                                  >  1:875284/1‑141 (MQ=255)
                                               cGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATAttt                                                                                              >  3:271801/1‑141 (MQ=255)
                                                gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTa                                                                                             >  1:818782/1‑141 (MQ=255)
                                                 ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAg                                                                                            >  1:765457/1‑141 (MQ=255)
                                                  cTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgtttatttttctgcataa                                                                                           <  1:50938‑M2/141‑25 (MQ=255)
                                                  cTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGt                                                                                           >  1:129719/1‑141 (MQ=255)
                                                    ttCATCACTCTAAAATACCCAATATACTTTTTATATCTTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAACGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTa                                                                                         <  2:1053301/141‑1 (MQ=255)
                                                    ttCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTa                                                                                         <  1:815810/141‑1 (MQ=255)
                                                      catcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAGCT‑AAAAACACGTTTACTTAATATTTAGTTaaa                                                                                       >  2:457463/1‑141 (MQ=255)
                                                      catcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTaaa                                                                                       >  1:1010828/1‑141 (MQ=255)
                                                       atcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTaaaa                                                                                      >  2:824569/1‑140 (MQ=255)
                                                        tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACa                                                                                     <  1:540701/141‑1 (MQ=255)
                                                         caCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACaa                                                                                    <  2:321257/141‑1 (MQ=255)
                                                           ctctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAAt                                                                                  >  3:105175/1‑141 (MQ=255)
                                                             ctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                                                                                >  3:167516/1‑141 (MQ=255)
                                                              tAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                                                                               <  1:257953/141‑1 (MQ=255)
                                                                     cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATCAGCTAATGa                                                                        >  2:400974/1‑141 (MQ=255)
                                                                     cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                        >  1:1072294/1‑141 (MQ=255)
                                                                     cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                        >  2:991683/1‑141 (MQ=255)
                                                                     cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                        >  3:337134/1‑141 (MQ=255)
                                                                       cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                                      <  2:227718/141‑1 (MQ=255)
                                                                       cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                                      >  1:612542/1‑141 (MQ=255)
                                                                         atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                                    >  3:293954/1‑141 (MQ=255)
                                                                         atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                                    <  3:298994/141‑1 (MQ=255)
                                                                            taCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAAt                                                                 <  1:324305/141‑1 (MQ=255)
                                                                                    atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                                         <  2:596398/141‑1 (MQ=255)
                                                                                    atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTAAAAAAAAAA‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                                         <  4:361792/141‑1 (MQ=255)
                                                                                     tatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatgat                                                        <  1:420944/141‑1 (MQ=255)
                                                                                      atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCGTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                                       >  3:60677/1‑141 (MQ=255)
                                                                                       tCGTTCGGATTCTGATTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                                      <  1:332849/141‑1 (MQ=255)
                                                                                            cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaa                                                 <  1:311595/141‑1 (MQ=255)
                                                                                             ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaaa                                                >  1:504771/1‑141 (MQ=255)
                                                                                              gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                               >  4:231702/1‑141 (MQ=255)
                                                                                                 tCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGa                                            <  4:233031/141‑1 (MQ=255)
                                                                                                 tCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGa                                            <  2:330176/141‑1 (MQ=255)
                                                                                                  cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaa                                           >  1:165151/1‑141 (MQ=255)
                                                                                                   tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                                          <  2:42465/141‑1 (MQ=255)
                                                                                                    gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                                         <  2:223785/141‑1 (MQ=255)
                                                                                                      gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                                       >  4:66925/1‑141 (MQ=255)
                                                                                                      gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                                       <  1:446272/141‑1 (MQ=255)
                                                                                                       tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                                      >  2:176236/1‑141 (MQ=255)
                                                                                                             aGACGGTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAATCATATAAGCTAATGAAGAAACTGAGGATGATACCTGAAACGGAAATAATCGTTTc                                <  2:560761/141‑1 (MQ=255)
                                                                                                             aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                                >  3:66233/1‑141 (MQ=255)
                                                                                                              aaCGATTTTCTGAATAAAAATAAACGTGTTTCAAGGAAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                               <  2:42397/140‑1 (MQ=255)
                                                                                                               aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                               <  4:48293/141‑1 (MQ=255)
                                                                                                               aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                              <  1:65422/141‑1 (MQ=255)
                                                                                                                 gATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAAAACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaat                            <  2:672866/141‑1 (MQ=255)
                                                                                                                  aTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCCATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                           <  1:853430/141‑1 (MQ=255)
                                                                                                                    tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATTAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTaataat                         <  2:1033085/141‑1 (MQ=255)
                                                                                                                        tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGAcc                     >  4:227253/1‑141 (MQ=255)
                                                                                                                         gCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCa                    >  2:527469/1‑141 (MQ=255)
                                                                                                                            tAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGt                 <  4:199024/141‑1 (MQ=255)
                                                                                                                              aaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAGTAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa               <  4:447563/141‑1 (MQ=255)
                                                                                                                                  tAAACGTGTTTttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagaca            <  3:246134‑M1/141‑131 (MQ=255)
                                                                                                                                  tAAACGTGTTTCAAGGCAATATATTGAAAATAACT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGaa           <  4:284959/141‑1 (MQ=255)
                                                                                                                                   aaaCGTGTTTttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacat           <  4:298994‑M1/141‑132 (MQ=255)
                                                                                                                                    aaCGTGTTTttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatg          <  2:6068‑M1/141‑133 (MQ=255)
                                                                                                                                       gtgtTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGttt      <  2:582600/141‑1 (MQ=255)
                                                                                                                                        tgtTTttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttt      <  1:441353‑M1/141‑137 (MQ=255)
                                                                                                                                        tgtTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTc     <  2:660977/141‑1 (MQ=255)
                                                                                                                                         gtTTttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgttttt     >  3:336600‑M1/1‑4 (MQ=255)
                                                                                                                                          tttttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttttg    >  2:181214‑M1/1‑3 (MQ=255)
                                                                                                                                          tttttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttttg    <  2:564317‑M1/141‑139 (MQ=255)
                                                                                                                                           ttttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttttgt   >  4:295305‑M1/1‑2 (MQ=255)
                                                                                                                                           ttttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttttgt   <  2:611945‑M1/141‑140 (MQ=255)
                                                                                                                                           ttCAAGGCAATATATTGCACTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATACTGACCATGTTAAGAATGTTTCttt  >  1:47929/1‑141 (MQ=255)
                                                                                                                                            tttaggtaattgcaatatattgccttgaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtttttgtg  <  2:904960‑M1/141‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTT  >  USA300TCH1516_ALE/2636226‑2636505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.