New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2636366100 (0.800)4 (0.040) 4/236 NT 3.9% intergenic (‑419/+50) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter
?USA300TCH1516_ALE = 2636392 107 (0.940)intergenic (‑445/+24) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 135 total aligned reads displayed.

CACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAATATTCTTTAAA  >  USA300TCH1516_ALE/2636253‑2636532
                                                                                                                                            |                                                                                                                                            
cacaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAa                                                                                                                                             <  2:904960‑M2/141‑2 (MQ=255)
cacaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAa                                                                                                                                             <  1:42397‑M2/141‑2 (MQ=255)
 acaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaa                                                                                                                                            >  4:295305‑M2/1‑139 (MQ=255)
 acaAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaa                                                                                                                                            <  2:611945‑M2/141‑3 (MQ=255)
  caAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                                           <  2:564392‑M2/141‑4 (MQ=255)
  caAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                                           <  2:564317‑M2/141‑4 (MQ=255)
  aaaaaacATGTCTTGAAACGCCTTTCATAACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaa                                                                                                                                           >  2:1043033‑M2/2‑138 (MQ=255)
   aaaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaac                                                                                                                                          >  2:424759‑M2/1‑137 (MQ=255)
   aaaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaac                                                                                                                                          >  3:336600‑M2/1‑137 (MQ=255)
    aaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaaca                                                                                                                                         <  1:133998‑M2/141‑6 (MQ=255)
    aaaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaaca                                                                                                                                         <  1:441353‑M2/141‑6 (MQ=255)
     aaaCATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacac                                                                                                                                        <  2:83458‑M2/141‑7 (MQ=255)
          tGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgttta                                                                                                                                   <  3:246134‑M2/141‑12 (MQ=255)
            tCTTGAAACGCCTTTCATCACTCTAAAATACCCTATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                                                 <  2:57530/141‑1 (MQ=255)
            tCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                                                 >  3:414809/1‑141 (MQ=255)
            tCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACt                                                                                                                                 >  1:498010/1‑141 (MQ=255)
             cTTTAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACtt                                                                                                                                <  3:430255/141‑1 (MQ=255)
             cTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACtt                                                                                                                                <  1:357694/141‑1 (MQ=255)
             cTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACtt                                                                                                                                <  2:442876/141‑1 (MQ=255)
                gAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAat                                                                                                                             >  1:875284/1‑141 (MQ=255)
                  aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAatat                                                                                                                           <  2:416784/141‑1 (MQ=255)
                    cGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATAttt                                                                                                                         >  3:271801/1‑141 (MQ=255)
                     gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTa                                                                                                                        >  1:818782/1‑141 (MQ=255)
                      ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAg                                                                                                                       >  1:765457/1‑141 (MQ=255)
                      ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAg                                                                                                                       >  1:491531/1‑141 (MQ=255)
                       cTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGt                                                                                                                      >  1:129719/1‑141 (MQ=255)
                         ttCATCACTCTAAAATACCCAATATACTTTTTATATCTTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAACGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTa                                                                                                                    <  2:1053301/141‑1 (MQ=255)
                         ttCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTa                                                                                                                    <  1:815810/141‑1 (MQ=255)
                           catcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTaaa                                                                                                                  >  1:1010828/1‑141 (MQ=255)
                            atcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTaaaa                                                                                                                 >  2:824569/1‑140 (MQ=255)
                             tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACa                                                                                                                <  1:540701/141‑1 (MQ=255)
                               aCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                                                              >  2:450898/1‑141 (MQ=255)
                                ctctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAAt                                                                                                             >  3:105175/1‑141 (MQ=255)
                                  ctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                                                                                                           >  3:167516/1‑141 (MQ=255)
                                   tAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                                                                                                          <  1:257953/141‑1 (MQ=255)
                                          cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATCAGCTAATGa                                                                                                   >  2:400974/1‑141 (MQ=255)
                                          cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                                                   >  2:991683/1‑141 (MQ=255)
                                          cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                                                   >  3:337134/1‑141 (MQ=255)
                                          cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                                                                   >  1:296113/1‑141 (MQ=255)
                                            cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                                                                 >  4:438879/1‑141 (MQ=255)
                                            cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                                                                 <  2:227718/141‑1 (MQ=255)
                                            aaaTAAACTTTTTATATCGTTCGGAATCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATAAAAAAAAAAA‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                                                                 <  2:644489/140‑1 (MQ=255)
                                              atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                                                               <  3:298994/141‑1 (MQ=255)
                                                 taCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAAt                                                                                            <  1:324305/141‑1 (MQ=255)
                                                         atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                                                                    <  2:596398/141‑1 (MQ=255)
                                                         atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTAAAAAAAAAA‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                                                                    <  4:361792/141‑1 (MQ=255)
                                                            tCGTTCGGATTCTGATTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                                                                 <  1:332849/141‑1 (MQ=255)
                                                                tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGa                                                                             >  3:295377/1‑141 (MQ=255)
                                                                  ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaaa                                                                           >  1:504771/1‑141 (MQ=255)
                                                                   gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                                                          >  4:231702/1‑141 (MQ=255)
                                                                      tCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGa                                                                       <  2:330176/141‑1 (MQ=255)
                                                                      tCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGa                                                                       <  4:232993/141‑1 (MQ=255)
                                                                       cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaa                                                                      >  2:24442/1‑141 (MQ=255)
                                                                        tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                                                                     <  2:596193/141‑1 (MQ=255)
                                                                           gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                                                                  <  1:446272/141‑1 (MQ=255)
                                                                           gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                                                                  >  4:66925/1‑141 (MQ=255)
                                                                           gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                                                                  >  1:1055937/1‑141 (MQ=255)
                                                                            tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                                                                 >  4:304501/1‑141 (MQ=255)
                                                                            tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                                                                 >  2:176236/1‑141 (MQ=255)
                                                                                  aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                                                           >  3:66233/1‑141 (MQ=255)
                                                                                  aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                                                           >  2:343740/1‑141 (MQ=255)
                                                                                   tactaTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                                                          <  1:624250/137‑1 (MQ=255)
                                                                                   aaCGATTTTCTGAATAAAAATAAACGTGTTTCAAGGAAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                                                          <  2:42397/140‑1 (MQ=255)
                                                                                    aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                                                          <  4:48293/141‑1 (MQ=255)
                                                                                    aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                                                         <  1:65422/141‑1 (MQ=255)
                                                                                      gATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAAAACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaat                                                       <  2:672866/141‑1 (MQ=255)
                                                                                       aTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCCATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                                                      <  1:853430/141‑1 (MQ=255)
                                                                                         tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATTAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTaataat                                                    <  2:1033085/141‑1 (MQ=255)
                                                                                             tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGAcc                                                >  4:227253/1‑141 (MQ=255)
                                                                                              gCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCa                                               >  2:527469/1‑141 (MQ=255)
                                                                                                 tAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGt                                            <  4:199024/141‑1 (MQ=255)
                                                                                                   aaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAGTAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa                                          <  4:447563/141‑1 (MQ=255)
                                                                                                      aTAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGa                                       <  2:501994/141‑1 (MQ=255)
                                                                                                       tAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattggggatgttagagtgatgaaaggcgtttcaagaca                                      <  2:1084095‑M2/141‑105 (MQ=255)
                                                                                                       tAAACGTGTTTCAAGGCAATATATTGAAAATAACT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGaa                                      <  4:284959/141‑1 (MQ=255)
                                                                                                        aaaCGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacat                                     <  4:4028‑M2/141‑106 (MQ=255)
                                                                                                           cGTGTTTCAAGGCAATATATTGCAATTACCT‑AAaaacacgtttatttttatgcagaaaatcgtctgaaatactcagaatccgaacgatataaaaagtatattgggtattttagagtgatgaaaggcgtttcaagacatgtt                                  <  2:187891‑M2/141‑109 (MQ=255)
                                                                                                             tgtTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTc                                <  2:661185/141‑1 (MQ=255)
                                                                                                              gtTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCt                               <  4:257414/141‑1 (MQ=255)
                                                                                                                  cAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTa                           >  2:615815/1‑141 (MQ=255)
                                                                                                                   aaGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTAc                          >  1:306044/1‑141 (MQ=255)
                                                                                                                        aaTATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATGAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTa                     >  1:820576/1‑141 (MQ=255)
                                                                                                                        aaTATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTa                     >  3:301982/1‑141 (MQ=255)
                                                                                                                         atatatTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTaa                    >  1:755003/1‑141 (MQ=255)
                                                                                                                            tatTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAAcc                 >  1:143877/1‑141 (MQ=255)
                                                                                                                            tatTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAAcc                 >  1:797269/1‑141 (MQ=255)
                                                                                                                            tatTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAAcc                 >  1:905073/1‑141 (MQ=255)
                                                                                                                            tatTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAAcc                 <  1:51737/141‑1 (MQ=255)
                                                                                                                              ttGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCaa               >  2:765371/1‑141 (MQ=255)
                                                                                                                               tGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCaaa              >  3:49766/1‑141 (MQ=255)
                                                                                                                                 cAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAat            <  4:134219/141‑1 (MQ=255)
                                                                                                                                 aaaTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAat            <  2:203313/140‑1 (MQ=255)
                                                                                                                                  aaTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAata           >  1:1055440/1‑141 (MQ=255)
                                                                                                                                  aaTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAata           >  2:281411/1‑141 (MQ=255)
                                                                                                                                   aTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAatat          <  2:390787/141‑1 (MQ=255)
                                                                                                                                   aTTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAatat          <  2:1444/141‑1 (MQ=255)
                                                                                                                                     tACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAATATTc        <  4:75538/141‑1 (MQ=255)
                                                                                                                                      aCCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAATATTCt       <  2:884000/141‑1 (MQ=255)
                                                                                                                                      aCCT‑AAAAACACGTTTACGTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATAAAGATGAGACCGGAGACGTAAATAATCGGTTCTTATAATGACTATGTTAAGAATGTTTCTTTGACAGTTAAACCAAAAGATTCt       >  1:648260/1‑141 (MQ=255)
                                                                                                                                       ccT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAATATTCtt      >  2:493208/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCT‑AAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAGAATGTTTCTTTTACAGTTAAACCAAAATATTCTTTAAA  >  USA300TCH1516_ALE/2636253‑2636532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.