BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2681424	118 (0.950)	4 (0.040)	3/228	NT	3.4%	intergenic (‑459/+120)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	= 2681449	123 (1.120)	4 (0.040)	3/228	NT	3.4%	intergenic (‑484/+95)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 173 total aligned reads displayed.

GGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATTTCTTG  >  USA300TCH1516_ALE/2681285‑2681564

ggAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACg                                                                                                                                             >  4:57129/1‑141 (MQ=255)

ggAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACg                                                                                                                                             >  2:307562/1‑141 (MQ=255)

ggAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACg                                                                                                                                             >  3:38577/1‑141 (MQ=255)

  aaCTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGaa                                                                                                                                           >  4:396789/1‑141 (MQ=255)

   aCTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAAc                                                                                                                                          <  1:537592/141‑1 (MQ=255)

     ttGAAGAATCTAAGCCTGTTAAAATCGAGACAATAAGAACCTCGTTCCAAATTTGAATCCTATAATGAACTAGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                                                                                        <  1:813202/141‑1 (MQ=255)

      tGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                                                                                       <  2:1003763/141‑1 (MQ=255)

       gaagaaTCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCtt                                                                                                                                      >  2:786980/1‑141 (MQ=255)

       gaagaaTCTAAGACTGTTAAAATCGAGACAATAAGAAACATGTACCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTTATTTACTAGTCAAAAAACTTCTATCACGAACGCtt                                                                                                                                      >  2:377120/1‑141 (MQ=255)

           aaTCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                                                                  <  2:177484/141‑1 (MQ=255)

             tCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAttt                                                                                                                                <  2:1056815/141‑1 (MQ=255)

                aaGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTAATTTTCCTTCGAATGATTTACTACTCCAAAAAATTCTATTACGAACGCTTCAATTTCCt                                                                                                                             >  3:268038/1‑141 (MQ=255)

                 aGACTTTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTg                                                                                                                            <  4:285785/141‑1 (MQ=255)

                 aGACAGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCTAAAAACTTCTATCACGAACGCTTCAATTTCCTg                                                                                                                            <  1:561797/141‑1 (MQ=255)

                   aCTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                                                                                          >  1:645369/1‑141 (MQ=255)

                          aaaTCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgt                                                                                                                   <  2:97167‑M2/141‑3 (MQ=255)

                            aTCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtga                                                                                                                 >  3:400317‑M2/1‑137 (MQ=255)

                              cGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACacgcatacaggaaattgaagcgttcgtgata                                                                                                               <  2:548075‑M1/141‑32 (MQ=255)

                              cGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACacgcatacaggaaattgaagcgttcgtgata                                                                                                               <  2:362400‑M1/141‑32 (MQ=255)

                               gagaCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACacgcatacaggaaattgaagcgttcgtgatag                                                                                                              <  4:134338‑M1/141‑33 (MQ=255)

                                agaCAATAAGAAACTCGTTCTAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgataga                                                                                                             >  4:191020‑M2/1‑133 (MQ=255)

                                agaCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgataga                                                                                                             <  1:540431‑M2/141‑9 (MQ=255)

                                 gaCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTCTGCGTgtgatagaa                                                                                                            <  1:83471‑M2/141‑10 (MQ=255)

                                  aCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaag                                                                                                           <  1:564950‑M2/141‑11 (MQ=255)

                                    aaTAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                                         >  1:171665‑M2/1‑129 (MQ=255)

                                      tAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtttt                                                                                                       >  4:347038‑M2/1‑127 (MQ=255)

                                           aaCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAATTTCTATCACTAACGCTTTAATTTCCTGTATGCGTttgatagaagttttttgat                                                                                                  <  2:473944‑M2/141‑20 (MQ=255)

                                            aCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtttt                                                                                                 <  2:1041603/141‑1 (MQ=255)

                                             cTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttttt                                                                                                >  1:512128/1‑141 (MQ=255)

                                               cGTTCAAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGt                                                                                              >  1:575785/1‑141 (MQ=255)

                                                gTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGtt                                                                                             >  3:337394/1‑141 (MQ=255)

                                                gTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGAATAAAAAAACAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGtt                                                                                             <  2:88918/141‑1 (MQ=25)

                                                   ccAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCat                                                                                          >  1:695004/1‑141 (MQ=255)

                                                    cAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                         <  4:152714/141‑1 (MQ=255)

                                                    cAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                         <  3:22110/141‑1 (MQ=255)

                                                     aaaTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                                                                        >  2:969535/1‑141 (MQ=255)

                                                       aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTa                                                                                      >  1:420146/1‑141 (MQ=255)

                                                       aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTa                                                                                      >  2:130062/1‑141 (MQ=255)

                                                        tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTaa                                                                                     <  1:171559/141‑1 (MQ=255)

                                                            aaTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTa                                                                                 >  2:729802/1‑141 (MQ=255)

                                                             aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTAt                                                                                >  2:836005/1‑141 (MQ=255)

                                                                  ataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg                                                                           <  4:258543/141‑1 (MQ=255)

                                                                         aTTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg                                                                    <  2:303880/141‑1 (MQ=255)

                                                                         aTTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg                                                                    <  4:357629/141‑1 (MQ=255)

                                                                            cGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                                                                 <  2:828174/141‑1 (MQ=255)

                                                                             gTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATgg                                                                <  1:130062/141‑1 (MQ=255)

                                                                                     aagaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACtt                                                        <  2:431290/141‑1 (MQ=255)

                                                                                      agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                                                       <  4:333326/141‑1 (MQ=255)

                                                                                        aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaaa                                                     <  1:925338/141‑1 (MQ=255)

                                                                                            tATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACttt                                                 >  3:16606/1‑141 (MQ=255)

                                                                                            tATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACttt                                                 >  1:164624/1‑141 (MQ=255)

                                                                                             aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGTCTTAAACtttt                                                >  2:235052/1‑141 (MQ=255)

                                                                                             aTTTACTTTTCAGTAGACTTAGTTACGAATCAAAAAACTTCTATCGCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCGAGGATTGACTGACTTNAATtttt                                                >  2:813206/1‑141 (MQ=21)

                                                                                               ttACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                                              >  1:285700/1‑141 (MQ=255)

                                                                                                tACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCtt                                             >  3:306141/1‑141 (MQ=255)

                                                                                                tACTTTTCATTAGACTGATAAAAAAAAAAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCtt                                             <  4:20197/141‑1 (MQ=25)

                                                                                                       cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc                                      <  2:437843/141‑1 (MQ=255)

                                                                                                         ttAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGc                                    <  1:779927/141‑1 (MQ=255)

                                                                                                            gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAt                                 >  1:10408/1‑141 (MQ=255)

                                                                                                            gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAt                                 >  3:344884/1‑141 (MQ=255)

                                                                                                            gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAt                                 >  2:108056/1‑141 (MQ=255)

                                                                                                             aCTGATTTACTCATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAtt                                <  4:318344/141‑1 (MQ=255)

                                                                                                             aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAtt                                <  1:748733/141‑1 (MQ=255)

                                                                                                               tGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCg                              >  1:181576/1‑141 (MQ=255)

                                                                                                               tGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCg                              >  3:241481/1‑141 (MQ=255)

                                                                                                                  tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                           >  2:709545/1‑141 (MQ=255)

                                                                                                                  tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                           <  1:853624/141‑1 (MQ=255)

                                                                                                                  tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                           >  4:13081/1‑141 (MQ=255)

                                                                                                                     aCTAATCAAAAACCTTCTATCACGCCCGCTTCAATTTCATGTATGCGTGTGATAGAAGTATTTCTTTTTGTTCACATTTATTGATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCAttt                        <  1:647211/141‑1 (MQ=255)

                                                                                                                       tAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTAc                      <  2:575785/141‑1 (MQ=255)

                                                                                                                        aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACt                     >  2:72536/1‑141 (MQ=255)

                                                                                                                        aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGGGATAGAAGTGTTTCTATTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACt                     >  2:1081197/1‑141 (MQ=255)

                                                                                                                          tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAt                   >  4:163856/1‑141 (MQ=255)

                                                                                                                           cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAtt                  <  1:331358/141‑1 (MQ=255)

                                                                                                                              aaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgtt               >  4:45876/1‑141 (MQ=255)

                                                                                                                               aaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTTTTTTTATTTATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgttt              >  4:240732/1‑140 (MQ=255)

                                                                                                                               aaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgttg              <  2:294218/141‑1 (MQ=255)

                                                                                                                               aaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgttg              >  2:216336/1‑141 (MQ=255)

                                                                                                                                aaCTTCTATCACGAACGNTTCAATTTCCNGTATNCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt             >  1:662857/1‑141 (MQ=255)

                                                                                                                                aaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt             >  4:338095/1‑141 (MQ=255)

                                                                                                                                 aCTTCTATCACacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattg            <  4:191311‑M1/141‑131 (MQ=255)

                                                                                                                                  cTTCTATCACacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgt           <  2:277997‑M1/141‑132 (MQ=255)

                                                                                                                                  cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCt           >  1:562510/1‑141 (MQ=255)

                                                                                                                                   ttCTATCACacgcagacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtc          <  1:83471‑M1/141‑133 (MQ=255)

                                                                                                                                   ttCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtc          <  3:448619‑M2/141‑108 (MQ=255)

                                                                                                                                    tCTATCACacgcataaaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtct         <  2:1028497‑M1/141‑134 (MQ=255)

                                                                                                                                     cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAt        >  3:444982/1‑141 (MQ=255)

                                                                                                                                      tATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcg       <  2:548075‑M2/141‑111 (MQ=255)

                                                                                                                                      tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt       >  1:1055738/1‑141 (MQ=255)

                                                                                                                                      tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt       >  1:886126/1‑141 (MQ=255)

                                                                                                                                      tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt       >  3:239049/1‑141 (MQ=255)

                                                                                                                                      tATCACGAACGCTTCAATTTCCTGTATGCGAGTGATAGAAGATTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt       >  3:143978/1‑141 (MQ=255)

                                                                                                                                       aTCACacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcga      >  1:30891‑M1/1‑5 (MQ=255)

                                                                                                                                       aTCACacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttctgattgtctcgt      >  2:213495‑M1/1‑5 (MQ=255)

                                                                                                                                       aTCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGTACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTACttt      >  2:970422/1‑141 (MQ=255)

                                                                                                                                        tCACacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcgat     >  3:400317‑M1/1‑4 (MQ=255)

                                                                                                                                          acacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcgattt   >  2:1036530‑M1/1‑2 (MQ=255)

                                                                                                                                           cacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcgatttt  <  3:29066‑M1/141‑141 (MQ=255)

                                                                                                                                           cacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcgatttt  <  3:28608‑M1/141‑141 (MQ=255)

                                                                                                                                           cacgcatacaggaaattgaagcgttcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagtttcttattgtctcgatttt  <  4:428962‑M1/141‑141 (MQ=255)

GGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATTTCTTG  >  USA300TCH1516_ALE/2681285‑2681564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.