New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3069998 (0.320)26 (0.010) 16/244 NT 5.2% intergenic (‑395/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3118 0 (0.000)intergenic (‑444/–) USA300HOU_RS14900/– hypothetical protein/–

Only 100 of 3401 total aligned reads displayed.

AATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2978‑3125
                                                                                                                                            |                                                                                                                                            
 aTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCt                                                                                                                                             >  4:168992‑M2/1‑140 (MQ=255)
  tAACTCGATTTTATATATATAGCTGTAACTTTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtt                                                                                                                                            >  1:506263‑M2/1‑139 (MQ=255)
   aaCTCAATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttt                                                                                                                                           >  2:654038‑M2/1‑138 (MQ=255)
    aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                                          >  3:322624‑M2/1‑137 (MQ=255)
    aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                                          >  4:37084‑M2/1‑137 (MQ=255)
    aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                                          >  3:238111‑M2/1‑137 (MQ=255)
    aCTCGATTTTATATATATAGCTGTAACCGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                                          >  2:78033‑M2/1‑137 (MQ=255)
      tCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta                                                                                                                                        <  3:174671‑M2/141‑7 (MQ=255)
        gATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCTTTAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa                                                                                                                                      <  2:818635‑M2/141‑2 (MQ=255)
          ttttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc                                                                                                                                              <  2:195496/131‑1 (MQ=255)
          ttttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatt                                                                                                                                    <  3:421541‑M2/141‑4 (MQ=255)
           tttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc                                                                                                                                   >  3:202164‑M2/1‑137 (MQ=255)
              atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                                <  2:56623‑M2/141‑8 (MQ=255)
              atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                                <  1:7475‑M2/141‑8 (MQ=255)
              atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                                <  1:478266‑M2/141‑8 (MQ=255)
               tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                               <  2:1069089‑M2/141‑9 (MQ=255)
               tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                               <  1:929778‑M2/141‑9 (MQ=255)
                atatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatat                                                                                                                              <  3:29130‑M2/141‑10 (MQ=255)
                 tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                                                                             <  1:832809‑M2/141‑11 (MQ=255)
                  atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataa                                                                                                                            <  4:250138‑M2/141‑12 (MQ=255)
                  atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAAACTTAAATAATACTGGGGGTCTTTTTATatgcaatataa                                                                                                                            <  1:695053‑M2/141‑12 (MQ=255)
                      aGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatact                                                                                                                        <  4:277967‑M2/141‑16 (MQ=255)
                          gTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactacta                                                                                                                    >  2:391731‑M2/1‑122 (MQ=255)
                              gtgTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaag                                                                                                                >  2:958286‑M2/2‑118 (MQ=255)
                              cTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaag                                                                                                                <  2:533793‑M2/141‑24 (MQ=255)
                                gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagta                                                                                                              >  2:363329‑M2/1‑116 (MQ=255)
                                 ttGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACGATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtat                                                                                                             <  1:634850‑M2/141‑27 (MQ=255)
                                  tGATATTATAGTGTTTAAACGTGTTTTTGTGCGTGAAAAGAAAATTAAAAAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata                                                                                                            >  4:195113‑M2/1‑114 (MQ=255)
                                   gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataa                                                                                                           >  1:424596‑M2/1‑113 (MQ=255)
                                    atatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgaaatctattactactagaagtataac                                                                                                          <  1:283501‑M2/141‑30 (MQ=255)
                                        tACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaa                                                                                                      <  1:368674‑M2/141‑34 (MQ=255)
                                         aCAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaa                                                                                                     >  2:297222‑M2/1‑107 (MQ=255)
                                         aCAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaa                                                                                                     <  4:227826‑M2/141‑35 (MQ=255)
                                          cAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaa                                                                                                    >  1:534317‑M2/1‑106 (MQ=255)
                                              gtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaa                                                                                                <  1:395638‑M2/141‑40 (MQ=255)
                                              gtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactaatagtagtataacagaaaatcaa                                                                                                <  2:759668‑M2/141‑40 (MQ=255)
                                                ttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaga                                                                                              >  1:1079528‑M2/1‑100 (MQ=255)
                                                  aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                            <  3:144024‑M2/141‑44 (MQ=255)
                                                  aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                            >  3:394816‑M2/1‑98 (MQ=255)
                                                  aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                            >  4:402846‑M2/1‑98 (MQ=255)
                                                  aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                            <  1:1034403‑M2/141‑44 (MQ=255)
                                                    aCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacagaaaatcaagataaa                                                                                          <  2:843882‑M2/141‑46 (MQ=255)
                                                       tgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa                                                                                       >  3:264956‑M2/1‑93 (MQ=255)
                                                       tgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa                                                                                       >  2:174853‑M2/1‑93 (MQ=255)
                                                        gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaa                                                                                      <  1:257263‑M2/141‑50 (MQ=255)
                                                        gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTAATAAGGTGTCGAGTATACGTTGGTACTGGAGTGCTTGTTATatgcaatgtaatactactagaagtataaccgaaaatcaagataataaaa                                                                                      <  1:214096‑M2/141‑50 (MQ=255)
                                                          ttttGTGCGTGGAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGAGTCGAATCTGAGATAATACTGGGGGGCTTTGTATatgcaatataatactacttgaagtataaccgagaaacaagataataaaacg                                                                                    >  4:702‑M2/1‑90 (MQ=255)
                                                          ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAAGCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                    <  1:900613‑M2/141‑52 (MQ=255)
                                                          ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                    >  2:707597‑M2/1‑90 (MQ=255)
                                                            ttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtt                                                                                  <  2:875463‑M2/141‑54 (MQ=255)
                                                             tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtta                                                                                 <  2:1018365‑M2/141‑55 (MQ=255)
                                                              gtgCGTGAAAGGAAAAAATAAAAAAAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaa                                                                                >  4:452830‑M2/1‑86 (MQ=255)
                                                                  tttttttgaaaatttGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgctatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaaga                                                                            <  2:929239‑M2/134‑60 (MQ=255)
                                                                  gTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaaga                                                                            <  1:1000847‑M2/141‑60 (MQ=255)
                                                                         gAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTTTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaccgttaaaagatatgacg                                                                     >  2:977791‑M2/1‑75 (MQ=255)
                                                                           aaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaa                                                                   >  3:109657‑M2/1‑73 (MQ=255)
                                                                              tttGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaag                                                                >  1:240849‑M2/1‑70 (MQ=255)
                                                                              tttGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaag                                                                <  1:772551‑M2/141‑72 (MQ=255)
                                                                                tGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg                                                              >  1:338897‑M2/1‑68 (MQ=255)
                                                                                tGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg                                                              >  2:907124‑M2/1‑68 (MQ=255)
                                                                                 gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgg                                                             <  1:160308‑M2/141‑75 (MQ=255)
                                                                                  aCAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg                                                            <  4:333657‑M2/141‑76 (MQ=255)
                                                                                   cAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggga                                                           <  2:682377‑M2/141‑77 (MQ=255)
                                                                                      tAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagtagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac                                                        >  3:89628‑M2/1‑62 (MQ=255)
                                                                                       aaaaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca                                                       <  2:423794‑M2/141‑81 (MQ=255)
                                                                                       aaaaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca                                                       >  4:145426‑M2/1‑61 (MQ=255)
                                                                                        aaaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaa                                                      >  1:985865‑M2/1‑60 (MQ=255)
                                                                                         aaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaac                                                     >  3:369660‑M2/1‑59 (MQ=255)
                                                                                            aCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcc                                                  <  1:876981‑M2/141‑86 (MQ=255)
                                                                                             ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaaataataaaacgttaaaagatatgacgaaaagtgggaaacaaagccc                                                 <  2:14659‑M2/141‑87 (MQ=255)
                                                                                              cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgccca                                                <  1:807027‑M2/141‑88 (MQ=255)
                                                                                              cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaacataatactactagaagtataaccgaaaataaagataataaaacgttaaaagatatgacgaaaagtgggaaaaaacgccca                                                <  2:47881‑M2/141‑88 (MQ=255)
                                                                                                  gTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatgga                                            <  2:619182‑M2/141‑92 (MQ=255)
                                                                                                  gTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatgga                                            <  3:63912‑M2/141‑92 (MQ=255)
                                                                                                  gTTATATTAGTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaaggataaccaaaaagcaagataataaaacgttaaaagagatgatgaaaagttggaaacaacgcccatgga                                            <  4:118874‑M2/141‑92 (MQ=255)
                                                                                                     atatTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagag                                         >  4:423391‑M2/1‑47 (MQ=255)
                                                                                                      tattatTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagaga                                        >  1:193252‑M2/1‑46 (MQ=255)
                                                                                                        ttattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaa                                      <  2:1048360‑M2/141‑98 (MQ=255)
                                                                                                          attaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaag                                    >  1:449812‑M2/1‑42 (MQ=255)
                                                                                                          attaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaag                                    >  2:729516‑M2/1‑42 (MQ=255)
                                                                                                           ttaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaaga                                   >  1:1058182‑M2/1‑41 (MQ=255)
                                                                                                           ttaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaaga                                   >  2:597119‑M2/1‑41 (MQ=255)
                                                                                                                gtgtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaata                              >  1:129738‑M2/1‑36 (MQ=255)
                                                                                                                  gtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaataga                            >  2:240115‑M2/1‑34 (MQ=255)
                                                                                                                       aTCTTAAATAATACTGGGGGTATTATTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagaaatgacgaaaagtgggaaacaacgccaaaaaaaaaaaaaaaaaatagataatg                       >  2:449359‑M2/1‑29 (MQ=255)
                                                                                                                        tCTTAAATAATACTGGGGTTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgagaaacaacgcccatggagagaaaagaaaatagataatgt                      >  1:854140‑M2/1‑28 (MQ=255)
                                                                                                                        tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgt                      <  1:56654‑M2/141‑114 (MQ=255)
                                                                                                                         cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgta                     >  2:505384‑M2/1‑27 (MQ=255)
                                                                                                                           tAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaag                   >  2:120339‑M2/1‑25 (MQ=255)
                                                                                                                            aaaTAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagc                  <  4:303038‑M2/141‑118 (MQ=255)
                                                                                                                              ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagcta                <  2:327705‑M2/141‑120 (MQ=255)
                                                                                                                               taataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctat               <  3:452602‑M2/141‑121 (MQ=255)
                                                                                                                               taataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctat               <  1:310167‑M2/141‑121 (MQ=255)
                                                                                                                                aataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatg              <  1:723106‑M2/141‑122 (MQ=255)
                                                                                                                                 ataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgc             <  2:265753‑M2/141‑123 (MQ=255)
                                                                                                                                  taCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgca            >  3:347816‑M2/1‑18 (MQ=255)
                                                                                                                                         ggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatac     >  1:667807‑M2/1‑11 (MQ=255)
                                                                                                                                           tCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatacta   <  1:601046‑M2/141‑133 (MQ=255)
                                                                                                                                           tCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg                                                            >  1:956918‑M2/1‑9 (MQ=255)
                                                                                                                                            cTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatactag  >  2:217096‑M2/1‑8 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2978‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.