BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 932471	121 (0.970)	7 (0.060)	7/234	NT	5.7%	intergenic (+17/+246)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA
*	?	USA300TCH1516_ALE	= 932493	120 (1.060)	7 (0.060)	7/234	NT	5.7%	intergenic (+39/+224)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA

Only 100 of 149 total aligned reads displayed.

GCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAG  >  USA300TCH1516_ALE/932353‑932631

   gTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtat                                                                                                                                         >  1:306664‑M2/1‑138 (MQ=255)

    tACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtatg                                                                                                                                        <  4:426622‑M2/141‑5 (MQ=255)

    tACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtatg                                                                                                                                        >  2:921534‑M2/1‑137 (MQ=255)

       acaTCGGTTGGAAAGGTTGGGTTTATATGGATGAACAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtatgtgc                                                                                                                                     >  4:372830‑M2/1‑134 (MQ=255)

           cGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtatgtgctatt                                                                                                                                 <  2:892550‑M2/141‑12 (MQ=255)

             gTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGACACATGANGTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAtttt                                                                                                                               <  1:19883/141‑1 (MQ=255)

              ttGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATTCAAATAGCATATAGCTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                                                                                                              <  2:909034/141‑1 (MQ=255)

                ggAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTtat                                                                                                                            >  1:129548/1‑141 (MQ=255)

                 gAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTtata                                                                                                                           >  4:243631/1‑141 (MQ=255)

                  aaaGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTatat                                                                                                                          >  2:105136/1‑141 (MQ=255)

                  aaaGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGAGTATGTGCTATTTTTatat                                                                                                                          >  2:772238/1‑141 (MQ=255)

                   aaGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtt                                                                                                                         >  1:268974/1‑141 (MQ=255)

                    aGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                                                        <  3:188401/141‑1 (MQ=255)

                    aGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                                                        <  3:424300/141‑1 (MQ=255)

                     ggTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                                                       >  1:618555/1‑141 (MQ=255)

                      gTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                                                                                                      <  2:170794/141‑1 (MQ=255)

                      gTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                                                                                                      >  1:1086164/1‑141 (MQ=255)

                      gTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCCTATGTGCTATTTTTATATTTTa                                                                                                                      <  1:714349/141‑1 (MQ=255)

                         gggTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAt                                                                                                                   >  2:22050/1‑141 (MQ=255)

                          ggTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAtt                                                                                                                  >  2:777128/1‑141 (MQ=255)

                           gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATNTTTATATTTTAAAttt                                                                                                                 <  1:947525/141‑1 (MQ=255)

                              tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCat                                                                                                              >  2:983725/1‑141 (MQ=255)

                              tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCat                                                                                                              <  2:1034727/141‑1 (MQ=255)

                                   tgATGGGNAGAGTGCGAAACATATTAAAGGTGGACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATATCTCATAACTCAACGATTGGTATTGGGTGTATGTGCTATGTTTATAGTTTAAATTTCatagaat                                                                                                         <  2:810839/140‑1 (MQ=255)

                                   ggATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                                                         <  3:337233/141‑1 (MQ=255)

                                     aTGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaatag                                                                                                       <  1:143277/141‑1 (MQ=255)

                                     aTGAGCAAAATGCGAAACATATGAAAGGGGAACAACAACCTGAAGCAGAAAAACATAAAAATTAAAATACAAATAGAACATAACTCAAAGAATTTAATTGAGCGTAAGCGCTATTTTTATATTTAAAATTTCatagaatag                                                                                                       >  4:24204/1‑141 (MQ=255)

                                       gAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                                                                                                     <  2:76534/141‑1 (MQ=255)

                                         gCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAgaatagaata                                                                                                   >  1:667295/1‑141 (MQ=255)

                                         gCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAgaatagaata                                                                                                   >  3:98694/1‑141 (MQ=255)

                                          cAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGaatagaatag                                                                                                  >  1:1048274/1‑141 (MQ=255)

                                           aaaTTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGt                                                                                                 >  1:796349/1‑141 (MQ=255)

                                           aaaTTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGt                                                                                                 >  1:15979/1‑141 (MQ=255)

                                            aaTTGCGAAACATATGATAGGTGAACCACAACCTGAGGTAGATAAACCTAAAAATTAAAATACAAATTGAACATAACTCAACGATTTTGATTGAACGTAAATGCTTTTTTTATATCGTAAATTTTATAGAATAGAATAGTa                                                                                                >  4:103611/1‑141 (MQ=255)

                                            aaTTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTa                                                                                                <  4:116016/141‑1 (MQ=255)

                                             aTTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTaa                                                                                               <  1:120641/141‑1 (MQ=255)

                                             aTTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTaa                                                                                               <  1:120610/141‑1 (MQ=255)

                                                   aaaCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtgtg                                                                                         >  4:13814/1‑141 (MQ=255)

                                                    aaCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGc                                                                                        >  2:12088/1‑141 (MQ=255)

                                                     aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                                                       <  1:334266/141‑1 (MQ=255)

                                                     aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                                                       <  2:920500/141‑1 (MQ=255)

                                                     aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                                                       <  3:134808/141‑1 (MQ=255)

                                                     aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                                                       <  3:353972/141‑1 (MQ=255)

                                                        tatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTgg                                                                                    >  1:92477/1‑141 (MQ=255)

                                                        tatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTgg                                                                                    >  2:66990/1‑141 (MQ=255)

                                                            aaaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGatat                                                                                >  1:29657/1‑141 (MQ=255)

                                                            aaaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGatat                                                                                <  3:210179/141‑1 (MQ=255)

                                                               ggTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgtg                                                                             <  4:428515/141‑1 (MQ=255)

                                                               ggTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgtg                                                                             <  1:195866/141‑1 (MQ=255)

                                                                 tGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                                                           <  2:522420/141‑1 (MQ=255)

                                                                   aaCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaa                                                                         >  2:953719/1‑141 (MQ=255)

                                                                   aaCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaa                                                                         <  1:841279/141‑1 (MQ=255)

                                                                    aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaat                                                                        >  2:382638/1‑141 (MQ=255)

                                                                     ccACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaata                                                                       <  1:713639/141‑1 (MQ=255)

                                                                      cacaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaataa                                                                      >  3:240979/1‑141 (MQ=255)

                                                                        caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAataata                                                                    >  2:567228/1‑141 (MQ=255)

                                                                          aCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaa                                                                  >  1:509363/1‑141 (MQ=255)

                                                                          aCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaa                                                                  >  2:144890/1‑141 (MQ=255)

                                                                           ccTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTATTTTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaa                                                                 >  2:666831/1‑141 (MQ=255)

                                                                           ccTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaa                                                                 <  1:38377/141‑1 (MQ=255)

                                                                           ccTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaa                                                                 <  4:395327/141‑1 (MQ=255)

                                                                              gAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaataa                                                              >  2:360313/1‑141 (MQ=255)

                                                                               aaGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                                                             >  3:195597/1‑141 (MQ=255)

                                                                                aGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAACAtaatt                                                            >  2:1082533/1‑141 (MQ=255)

                                                                                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCa                                                       >  2:32775/1‑141 (MQ=255)

                                                                                      tAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAg                                                      <  2:1005926/141‑1 (MQ=255)

                                                                                        aaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTTGCAATAATAAAATAATTAATCAGAt                                                    >  2:613036/1‑141 (MQ=255)

                                                                                        aaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGAt                                                    >  2:787398/1‑141 (MQ=255)

                                                                                         aCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATa                                                   <  1:537173/141‑1 (MQ=255)

                                                                                             aaaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATa                                               >  4:27146/1‑141 (MQ=255)

                                                                                               aaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGt                                             >  2:320245/1‑141 (MQ=255)

                                                                                                 aTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGtatgtgctatttttatattttaatttttaggtttatctacttcaggttgtggttcacctttcatatgtttcgcaatttgctcatccatataaaccca                                           <  2:362448‑M2/141‑98 (MQ=255)

                                                                                                   tAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaa                                         <  3:217526/141‑1 (MQ=255)

                                                                                                    aaaaTACAAATAGCTCATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCCATAATAAAATAATTAATCCGATAAATAGTATaaa                                        <  2:267021/141‑1 (MQ=255)

                                                                                                         aCAAATAGCACATAACTCAACGATTTTGATTGAGCGtatgtgctatttgtattttaatttttaggtttatctacttcaggttgtggttcacctttcatatgtttcgcaatttgctcatccatataaacccaacctttccaa                                   <  2:259212‑M2/141‑106 (MQ=255)

                                                                                                          cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACt                                  <  2:129548/141‑1 (MQ=255)

                                                                                                           aaaTAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACtt                                 <  2:222010/141‑1 (MQ=255)

                                                                                                             aTAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAAGATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTc                               <  2:974443/141‑1 (MQ=255)

                                                                                                               aGCACATAACTCAACGATTTTGATTGAGCGtatgtgctatttgtattttaatttttaggtttatctacttcaggttgtggttcacctttcatatgtttcgcaatttgctcatccatataaacccaacctttccaaccgatg                             <  1:637306‑M2/141‑112 (MQ=255)

                                                                                                                 cacaTAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCAt                           <  1:398118/141‑1 (MQ=255)

                                                                                                                   caTAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCa                         <  1:1023761/141‑1 (MQ=255)

                                                                                                                     tAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGt                       <  1:134974/141‑1 (MQ=255)

                                                                                                                      aaCTCAACGATTTTGATTGAGCGtatgtgctatttgtattttaatttttaggtttatctacttcaggttgtggtgcacctttcatatgtttcgcaatttgctcatccatataaacccaacctttccaaccgatgtgtacgg                      <  2:791290‑M2/141‑119 (MQ=255)

                                                                                                                         tCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGCGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCaa                   >  2:417829/1‑141 (MQ=255)

                                                                                                                            aCGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAAttt                >  4:199550/1‑141 (MQ=255)

                                                                                                                             cGATTTTGATTGAGCGtatgtgctatttgtattttaatttttaggtttatctacttcaggttgtggttcacctttcatatgtttcgcaatttgctcatccatataaacccaacctttccaaccgatgtgtacggcatcact               <  2:944640‑M2/141‑126 (MQ=255)

                                                                                                                                 tttGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAg           >  1:181670/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAACTAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  3:210703/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  1:661381/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  4:220240/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  3:51933/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  3:443238/1‑141 (MQ=255)

                                                                                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc          >  4:274200/1‑141 (MQ=255)

                                                                                                                                    gattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGa        >  1:1009801/1‑141 (MQ=255)

                                                                                                                                      ttgaGCGTATGTGCTATTTTTCTATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaa      <  4:105803/141‑1 (MQ=255)

                                                                                                                                      ttgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaa      <  1:816382/141‑1 (MQ=255)

                                                                                                                                       tgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaaa     >  1:180082/1‑141 (MQ=255)

                                                                                                                                        gaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaaaa    >  1:108803/1‑141 (MQ=255)

                                                                                                                                        gaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaaaa    >  3:126930/1‑141 (MQ=255)

                                                                                                                                         aGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGaaaaaa   >  1:838868/1‑141 (MQ=255)

GCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAG  >  USA300TCH1516_ALE/932353‑932631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.