BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1575673 =	107 (0.860)	7 (0.060)	5/248	NT	6.4%	coding (1844/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	1575710 =	102 (0.850)	7 (0.060)	5/248	NT	6.4%	coding (1807/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 135 total aligned reads displayed.

CCAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTATTGT  >  USA300TCH1516_ALE/1575570‑1575848

ccAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTgag                                                                                                                                            >  4:240246/1‑141 (MQ=255)

ccAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTgag                                                                                                                                            >  1:236015/1‑141 (MQ=255)

ccAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTgag                                                                                                                                            >  1:775345/1‑141 (MQ=255)

 cAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTgaga                                                                                                                                           >  3:208002/1‑141 (MQ=255)

  cttgattgaagcgggaccagataaaattaatagctatagtaaatccttaaagaattccaatggcgaaagtaaaaaagcagcagatttgatgaaagataatcTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGAt                                                                                                                                          >  1:465208‑M1/102‑141 (MQ=255)

  aaCCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAGGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGAt                                                                                                                                          <  3:156576/141‑1 (MQ=255)

     cAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTAt                                                                                                                                       >  1:643187/1‑141 (MQ=255)

     cAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTAt                                                                                                                                       >  2:790493/1‑141 (MQ=255)

      aGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATc                                                                                                                                      >  1:931579/1‑141 (MQ=255)

              gtgtAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTtcatca                                                                                                                              >  4:331659/1‑141 (MQ=255)

              gtgtAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTtcatca                                                                                                                              <  4:329957/141‑1 (MQ=255)

                gtcaaTCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCaaa                                                                                                                            >  4:18424/4‑141 (MQ=255)

                gtAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCaaa                                                                                                                            >  2:198012/1‑141 (MQ=255)

                  aaaTCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATc                                                                                                                          >  4:299780/1‑141 (MQ=255)

                  aaaTCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATc                                                                                                                          >  2:1046165/1‑141 (MQ=255)

                       cATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATctgctg                                                                                                                     <  4:48984/141‑1 (MQ=255)

                         tCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAAGCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTgctgct                                                                                                                   >  3:348853/1‑141 (MQ=255)

                          cAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCtt                                                                                                                  <  1:707412/141‑1 (MQ=255)

                           aaCTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCttt                                                                                                                 <  1:105198/141‑1 (MQ=255)

                           aaCTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCttt                                                                                                                 >  1:738669/1‑141 (MQ=255)

                                  tttGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCACATCTGCTGCTTTTTTACtt                                                                                                          <  1:87324/141‑1 (MQ=255)

                                     gTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCg                                                                                                       <  1:864663/141‑1 (MQ=255)

                                       tAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGcc                                                                                                     <  3:150368/141‑1 (MQ=255)

                                       tAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGcc                                                                                                     >  1:1084890/1‑141 (MQ=255)

                                          aCCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCAtt                                                                                                  >  3:10837/1‑141 (MQ=255)

                                          aCCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCAtt                                                                                                  >  2:755386/1‑141 (MQ=255)

                                            cTTCCGCTCCTGCTCTAATCATAGGCGTTAACTCTTTACCGACTTCGATTGCAAACGATTAGATCACGCAACCTAACTGCCCGAGAGCGCCTTTGAGATTAGCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTgg                                                                                                >  1:486871/1‑141 (MQ=255)

                                            cTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTgg                                                                                                >  2:1050245/1‑141 (MQ=255)

                                             ttCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGa                                                                                               <  2:8022/141‑1 (MQ=255)

                                             ttCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGa                                                                                               <  4:162659/141‑1 (MQ=255)

                                             ttCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGa                                                                                               <  3:284088/141‑1 (MQ=255)

                                                cGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAAtt                                                                                            <  1:716005/141‑1 (MQ=255)

                                                 gCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTc                                                                                           >  1:992309/1‑141 (MQ=255)

                                                     cTGCTNTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAACGCGCCGCCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTa                                                                                       <  1:18601/141‑1 (MQ=255)

                                                      tGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTaa                                                                                      >  2:880230/1‑141 (MQ=255)

                                                        ctctAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAgg                                                                                    <  1:729619/141‑1 (MQ=255)

                                                          ctAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGAt                                                                                  <  2:365882/141‑1 (MQ=255)

                                                            aaTCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGAttt                                                                                <  2:464656/141‑1 (MQ=255)

                                                            aaTCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGAttt                                                                                <  3:194028/141‑1 (MQ=255)

                                                                aTAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACta                                                                            <  2:313181/141‑1 (MQ=255)

                                                                 tAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACtat                                                                           <  2:1612/141‑1 (MQ=255)

                                                                  aGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACtata                                                                          >  1:319561/1‑141 (MQ=255)

                                                                  aGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACtata                                                                          >  2:1007890/1‑141 (MQ=255)

                                                                    gCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCACGGGAATTCTTTAAGGATTTACTATAGc                                                                        >  2:377158/1‑141 (MQ=255)

                                                                     cGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCt                                                                       <  2:966255/141‑1 (MQ=255)

                                                                     cGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGAGCCTTTGAGATTAGTGTTGATCAAATCGGCTGCGTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCt                                                                       >  3:386265/1‑141 (MQ=255)

                                                                       ttAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTAt                                                                     <  1:1073335/141‑1 (MQ=255)

                                                                        tAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTAtt                                                                    >  1:130168/1‑141 (MQ=255)

                                                                         aaaTCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTa                                                                   >  2:887648/1‑141 (MQ=255)

                                                                          aaTCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTaa                                                                  >  1:219023/1‑141 (MQ=255)

                                                                           aTCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAAt                                                                 <  1:846766/141‑1 (MQ=255)

                                                                             cTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAAttt                                                               <  4:193612/141‑1 (MQ=255)

                                                                              tttACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAAtttt                                                              <  2:280854/141‑1 (MQ=255)

                                                                                 aCCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATc                                                           <  1:475650/141‑1 (MQ=255)

                                                                                  ccGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCt                                                          >  1:568887/1‑141 (MQ=255)

                                                                                       ttCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTcc                                                     <  2:735591/141‑1 (MQ=255)

                                                                                        tCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTccc                                                    >  2:319286/1‑141 (MQ=255)

                                                                                        tCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTccc                                                    >  2:319166/1‑141 (MQ=255)

                                                                                          gATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGc                                                  <  1:148084/141‑1 (MQ=255)

                                                                                            ttGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTAGCTTTCATCAAATCTGCTGCGTTTGAACTGGCGCCAGTGGAATTCGTTAAGGATTTACTATAGCTATTAATTTTATTTGGTCCCGCtt                                                >  1:648305/1‑141 (MQ=255)

                                                                                             tGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTtc                                               <  1:787743/141‑1 (MQ=255)

                                                                                               cTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTtcaa                                             <  2:807360/141‑1 (MQ=255)

                                                                                                 aaTGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTtcaatc                                           <  1:442138/141‑1 (MQ=255)

                                                                                                  aTGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTtcaatca                                          >  4:419186/1‑141 (MQ=255)

                                                                                                   tGATTCAAAAGCGCCACCTAGTTGTTTCAGAGCGTCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTAATTTCGCCATTGGAATTCTTTAAGGATTTACTATGGCTATTAATTTTATCTGGTCCCGCTtcaatcca                                         <  4:295339/141‑3 (MQ=255)

                                                                                                       TCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGAGTTACTATAGCTATTTATTTTATCTGGTCCCGCTTCAATCAAGGCt                                     <  2:590845‑M1/141‑1 (MQ=255)

                                                                                                        CAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTa                                    <  1:552465‑M1/141‑1 (MQ=255)

                                                                                                         AAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTaa                                   <  1:857633‑M1/141‑1 (MQ=255)

                                                                                                         AAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTaa                                   <  1:34352‑M1/141‑1 (MQ=255)

                                                                                                          AAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTaaa                                  >  2:801720‑M1/1‑141 (MQ=255)

                                                                                                           aggcgctctggaacaattaggtggcgcttttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTAc                                                                              <  1:122625‑M2/63‑1 (MQ=255)

                                                                                                           aggcgctctggaacaattaggtggcgcttttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTAc                                                                              >  2:122625‑M2/34‑96 (MQ=255)

                                                                                                           aggcgctctggaacaattaggtggcgcttttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTaaaa                                 >  2:668891‑M2/34‑141 (MQ=255)

                                                                                                           AAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTaaaa                                 <  2:639847‑M1/141‑1 (MQ=255)

                                                                                                             gcgcCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAAt                               <  2:332109/141‑1 (MQ=255)

                                                                                                             gcgcCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAAt                               >  2:952500/1‑141 (MQ=255)

                                                                                                                cgaCCGAATTGTGCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCa                            <  2:36088/139‑1 (MQ=255)

                                                                                                                ccACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCa                            >  3:298683/1‑141 (MQ=255)

                                                                                                                 cACCTCATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAACTCCGCTGCATATTTACCTCCGACATTGAAACTTTTTGCGGTTTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCAc                           <  1:377158/141‑1 (MQ=255)

                                                                                                                 cACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCAc                           <  1:153063/141‑1 (MQ=255)

                                                                                                                   tggaacaattaggtggcgcttttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACtt                         >  1:1064285‑M2/26‑141 (MQ=255)

                                                                                                                   tggaacaattaggtggcgcttttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACtt                         >  1:1064118‑M2/26‑141 (MQ=255)

                                                                                                                   ccTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACtt                         >  2:852097/1‑141 (MQ=255)

                                                                                                                     tAATCGTTCCAGAGCGCCTTTGAGAGTATCTTTCATCCACTCGGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGCCCCGCTTCAATCAAGGCTAAAAATCCACTtgc                       <  2:625776/141‑1 (MQ=255)

                                                                                                                      aaTTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTtgct                      <  1:790493/141‑1 (MQ=255)

                                                                                                                       aTTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTtactg                     <  2:201041/141‑1 (MQ=255)

                                                                                                                         tGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTgctgct                   >  1:569416/1‑141 (MQ=255)

                                                                                                                           ttCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCCTTAAGGATTTACTATAGCTATTAACTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTc                 >  4:14169/1‑141 (MQ=255)

                                                                                                                              cAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGt              >  2:999356/1‑141 (MQ=255)

                                                                                                                               agagCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTa             <  2:806780/141‑1 (MQ=255)

                                                                                                                                  gcgcCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCa          <  1:358425/141‑1 (MQ=255)

                                                                                                                                  gcgcCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCa          <  2:898176/141‑1 (MQ=255)

                                                                                                                                  gcgcCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCa          <  3:162609/141‑1 (MQ=255)

                                                                                                                                    gcCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAAc        <  2:165646/141‑1 (MQ=255)

                                                                                                                                     ccTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGTCTAAAAATTCACTTGCTGCTTCATNTCCAACt       >  2:813118/1‑141 (MQ=255)

                                                                                                                                      cTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTTTTTTTGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTa      >  4:194452/1‑141 (MQ=255)

                                                                                                                                      cTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTa      <  4:358680/141‑1 (MQ=255)

                                                                                                                                        ttgaGATTATCTTTCATCAACTCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTAtt    >  2:483365‑M2/5‑141 (MQ=255)

                                                                                                                                        ttgaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTAtt    >  1:924918‑M2/5‑141 (MQ=255)

                                                                                                                                          gaGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTATTGt  <  2:931579‑M2/139‑1 (MQ=255)

CCAACCAGGGAGATGTGTAAATCCATCAACTAATTTTGTTAAACCTTCCGCTCCTGCTCTAATCATAGGCGTTAAATCTTTACCGACTTCGATTGCTAATGATTCAAAAGCGCCACCTAATTGTTCCAGAGCGCCTTTGAGATTATCTTTCATCAAATCTGCTGCTTTTTTACTTTCGCCATTGGAATTCTTTAAGGATTTACTATAGCTATTAATTTTATCTGGTCCCGCTTCAATCAAGGCTAAAAATCCACTTGCTGCTTCAGTACCAACTATTGT  >  USA300TCH1516_ALE/1575570‑1575848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.