BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1822865 =	129 (1.040)	7 (0.060)	7/240	NT	5.7%	intergenic (+186/+60)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
*	?	USA300TCH1516_ALE	1822909 =	110 (0.950)	7 (0.060)	7/240	NT	5.7%	intergenic (+230/+16)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

Only 100 of 152 total aligned reads displayed.

ACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAG  >  USA300TCH1516_ALE/1822769‑1823048

aCTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTa                                                                                                                                              >  3:95710/1‑141 (MQ=255)

aCTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTa                                                                                                                                              >  1:367140/1‑141 (MQ=255)

 cTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTaa                                                                                                                                             >  1:930621/1‑141 (MQ=255)

    aataatGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAatat                                                                                                                                          >  2:882978/1‑141 (MQ=255)

    aataatGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAatat                                                                                                                                          >  2:49111/1‑141 (MQ=255)

     ataataATTTCATCATCTTCTTCGACTACTTAATTATTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAAtat‑t                                                                                                                                        <  4:17022/141‑1 (MQ=255)

        atGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAAtat‑ttat                                                                                                                                     <  2:241724/141‑1 (MQ=255)

         tGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAAtat‑ttatt                                                                                                                                    >  1:1018992/1‑141 (MQ=255)

          gTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATat‑ttattt                                                                                                                                   >  2:552069/1‑141 (MQ=255)

           ttttCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAt‑ttattta                                                                                                                                  >  2:259328/1‑141 (MQ=255)

            tttCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTaa                                                                                                                                 <  1:912371/141‑1 (MQ=255)

             ttCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTaaa                                                                                                                                <  3:372705/141‑1 (MQ=255)

              tCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTaaaa                                                                                                                               <  4:217812/141‑1 (MQ=255)

              gtcgttattccaacagatgaagaaagtatgattgcccgtgatgttatgacattcggtggtttaaaataatttttaaataaatattaagcgtctacctcctacatataattgtagcggagatagacgcttAATAt‑ttattta                                                                                                                                  <  2:374254‑M2/12‑1 (MQ=255)

               cATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACATCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTaaaaa                                                                                                                              >  1:1025061/1‑141 (MQ=255)

                aTAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAat                                                                                                                             <  1:205925/141‑1 (MQ=255)

                  aaTCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAatta                                                                                                                           >  2:1006749/1‑141 (MQ=255)

                    tcttctTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAattatt                                                                                                                         >  2:900766/1‑141 (MQ=255)

                     cttcttCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTAttt                                                                                                                        <  4:349003/141‑1 (MQ=255)

                         ttcGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTaaa                                                                                                                    >  1:540306/1‑141 (MQ=255)

                            gACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAacca                                                                                                                 <  2:21170/141‑1 (MQ=255)

                                 ctTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGaa                                                                                                            >  2:957973/1‑141 (MQ=255)

                                    aaTTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGt                                                                                                         <  2:947523/141‑1 (MQ=255)

                                        cTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATa                                                                                                     >  2:132442/1‑141 (MQ=255)

                                        cTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATa                                                                                                     <  3:291786/141‑1 (MQ=255)

                                           tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACa                                                                                                  >  2:876280/1‑141 (MQ=255)

                                           tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACa                                                                                                  >  2:525491/1‑141 (MQ=255)

                                                tatTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACg                                                                                             <  2:1065772/141‑1 (MQ=255)

                                                cccgtgatgttatgacattcggtggtttaaaataatttttaaataaatattaagcgtctatctcaactacaattatatgtagtatgtatacgcttAATAT‑TTATTTAAAAATTATTTTAAACAACCAAATGTAATAACATc                                                                                                >  2:900948‑M2/96‑141 (MQ=255)

                                                 atTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                                                                            <  3:239925/141‑1 (MQ=255)

                                                 atTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                                                                            <  1:1017170/141‑1 (MQ=255)

                                                  ttCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TCTAGCGGAGATAGACGCTTAATAT‑ATATTTAAAAATTATTTTAAACCACCGAATGACATCCCATCACggg                                                                                           >  4:420413/1‑141 (MQ=255)

                                                      tGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                                                                       >  1:40704/1‑141 (MQ=255)

                                                      tGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                                                                       <  2:671196/141‑1 (MQ=255)

                                                      tGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                                                                       <  3:164761/141‑1 (MQ=255)

                                                       gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATc                                                                                      >  3:66245/1‑141 (MQ=255)

                                                        aaaaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCa                                                                                     <  3:335796/141‑1 (MQ=255)

                                                          aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATa                                                                                   >  1:925050/1‑141 (MQ=255)

                                                             agaCANTACACTAGTTAATTTTCAAACATTACAAACTGCGTCTACCCCC‑‑TGAATATAAT‑GTAAGTGGAGATAAAGGGTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAAGGTCATAACATCACGGGCAATCATACtt                                                                                <  1:317636/141‑1 (MQ=255)

                                                               aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttc                                                                              >  2:211032/1‑141 (MQ=255)

                                                                cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                                                                             <  1:624373/141‑1 (MQ=255)

                                                                 aTTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                                                                            <  2:985509/141‑1 (MQ=255)

                                                                  ttACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                                                                           <  1:432685/141‑1 (MQ=255)

                                                                    acacTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt                                                                         <  1:147804/141‑1 (MQ=255)

                                                                      acTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCt                                                                       <  3:436484/141‑1 (MQ=255)

                                                                       cTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg                                                                      >  2:932359/1‑141 (MQ=255)

                                                                           ttAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg                                                                  >  2:123265/1‑141 (MQ=255)

                                                                           aataatttttaaataaatattAAGCGTCTATCTCCGCTACA‑ATTATATGTAG‑‑GAGGTAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg                                                                  <  3:280309‑M1/120‑1 (MQ=255)

                                                                              aTTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAAt                                                               >  1:519758/1‑141 (MQ=255)

                                                                                   cAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGa                                                          <  1:206766/141‑1 (MQ=255)

                                                                                   cAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGa                                                          <  2:946766/141‑1 (MQ=255)

                                                                                   cAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGa                                                          >  3:297240/1‑141 (MQ=255)

                                                                                    aaaCAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGAc                                                         <  1:882978/141‑1 (MQ=255)

                                                                                     aaCAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACa                                                        <  2:893507/141‑1 (MQ=255)

                                                                                        aaTACAAAAAGCGTCTACCTCC‑‑TACATATGAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACt                                                     <  1:418087/141‑1 (MQ=255)

                                                                                        aaTACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCAt                                                                                                      >  1:54002/1‑92 (MQ=255)

                                                                                         aTACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGACTGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACtt                                                    <  2:372557/141‑1 (MQ=255)

                                                                                         aTACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACtt                                                    >  3:163409/1‑141 (MQ=255)

                                                                                            cAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTaa                                                 <  3:449559/141‑1 (MQ=255)

                                                                                             aaaaaGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAAc                                                >  1:870291/1‑141 (MQ=255)

                                                                                              aaaaGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACt                                               >  1:611078/1‑141 (MQ=255)

                                                                                                 AGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGt                                            <  2:972372‑M1/141‑1 (MQ=255)

                                                                                                 AGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGt                                            <  1:633256‑M1/141‑1 (MQ=255)

                                                                                                   CGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGa                                          >  1:696123‑M1/1‑141 (MQ=255)

                                                                                                    GTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGaa                                         >  1:750456‑M1/1‑141 (MQ=255)

                                                                                                     TCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTggtggat                                        <  1:1048031‑M1/141‑4 (MQ=255)

                                                                                                     TCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAAt                                        >  1:1017090‑M1/1‑141 (MQ=255)

                                                                                                     TCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAAt                                        >  1:957973‑M1/1‑141 (MQ=255)

                                                                                                      CTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATg                                       >  2:128317‑M1/1‑141 (MQ=255)

                                                                                                      CTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTCAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATg                                       <  1:785033‑M1/141‑1 (MQ=255)

                                                                                                       gtctatctccgctacaattatatgtaggaggtagacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTAAACTGGTGaa                                         >  3:222707‑M2/41‑141 (MQ=255)

                                                                                                       TACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAGCATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGa                                      <  2:573226‑M1/141‑1 (MQ=255)

                                                                                                       TACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGa                                      <  2:526488‑M1/141‑1 (MQ=255)

                                                                                                          tatctccgctacaattatatgtaggaggtagacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTAGAATAACGACAACTTTAACTGGTGAATGa                                      >  2:777578‑M2/38‑141 (MQ=255)

                                                                                                          ctcc‑‑tACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGa                                   <  4:297250/141‑1 (MQ=255)

                                                                                                           tcc‑‑tACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGAt                                  >  2:414580/1‑141 (MQ=255)

                                                                                                             c‑‑tACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAg                                >  3:387061/1‑141 (MQ=255)

                                                                                                               ccgctacaattatatgtaggaggtagacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATa                                 >  1:151699‑M2/33‑141 (MQ=255)

                                                                                                                tACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGt                               <  1:980197/141‑1 (MQ=255)

                                                                                                                cgctacaattatatgtaggaggtagacgcttTTTGTATTGTTTGAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATa                                 >  2:137449‑M2/32‑141 (MQ=255)

                                                                                                                   atatAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTtaa                            <  2:366310/141‑1 (MQ=255)

                                                                                                                    tataAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTtaat                           >  2:779158/1‑141 (MQ=255)

                                                                                                                     ataAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTtaata                          >  1:88126/1‑141 (MQ=255)

                                                                                                                     ataAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTtaata                          <  1:182124/141‑1 (MQ=255)

                                                                                                                      taAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTtaataa                         >  1:174592/1‑141 (MQ=255)

                                                                                                                         t‑tGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATc                      <  2:257834/141‑1 (MQ=255)

                                                                                                                         t‑tGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATc                      <  3:67774/141‑1 (MQ=255)

                                                                                                                           tGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATcc                     >  3:22684/1‑141 (MQ=255)

                                                                                                                            gTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCct                    >  2:474870/1‑141 (MQ=255)

                                                                                                                              aGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAAGGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCcttc                  <  1:932359/141‑1 (MQ=255)

                                                                                                                              aGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCcttc                  <  2:1025061/141‑1 (MQ=255)

                                                                                                                              aGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCcttc                  >  1:725986/1‑141 (MQ=255)

                                                                                                                                   agaTAGACGCTTAATAT‑GTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTAc             <  1:874449/141‑1 (MQ=255)

                                                                                                                                        gacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACgt        <  1:550169‑M2/134‑1 (MQ=255)

                                                                                                                                        gacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACgt        >  1:1042128‑M2/8‑141 (MQ=255)

                                                                                                                                        gacgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACgt        >  1:545372‑M2/8‑141 (MQ=255)

                                                                                                                                         acgcttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACgta       >  3:337471‑M2/7‑141 (MQ=255)

                                                                                                                                            cttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACgtagta    >  2:637287‑M2/4‑141 (MQ=255)

                                                                                                                                             ttAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTaa   >  4:230595‑M2/3‑141 (MQ=255)

                                                                                                                                              tAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAg  >  1:943766‑M2/2‑141 (MQ=255)

ACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCC‑‑TACATATAAT‑TGTAGCGGAGATAGACGCTTAATAT‑TTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAG  >  USA300TCH1516_ALE/1822769‑1823048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.