BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2336425 =	108 (0.870)	8 (0.070)	8/236	NT	8.1%	intergenic (‑145/+75)	USA300HOU_RS11920/USA300HOU_RS11925	hypothetical protein/putative oxidoreductase/MSMEI_2347
*	?	USA300TCH1516_ALE	2336465 =	83 (0.730)	8 (0.070)	8/236	NT	8.1%	intergenic (‑185/+35)	USA300HOU_RS11920/USA300HOU_RS11925	hypothetical protein/putative oxidoreductase/MSMEI_2347

Only 100 of 132 total aligned reads displayed.

ATTAATTATCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATCT  >  USA300TCH1516_ALE/2336327‑2336605

tttttctcacatgctgatccagagatgattaaagcacttacaagcagagaattagatgtttaatcataatataacaaagtaaatcatttacattacactaacctgaaacatagactttaacatccaagtttcaggttagtg                                                                                                                                            <  2:199405‑M2/3‑1 (MQ=255)

attaattaTCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTAACTTTTTAAAAATAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAgtg                                                                                                                                            <  4:282762/141‑1 (MQ=255)

 ttaattaTCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAgtgt                                                                                                                                           >  4:327629/1‑141 (MQ=255)

 ttaattaTCCAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAgtgt                                                                                                                                           >  1:665206/1‑141 (MQ=255)

  taattaTCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGtgta                                                                                                                                          >  1:305418/1‑141 (MQ=255)

  taattaTCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTGATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGATTAGtgta                                                                                                                                          >  4:107199/1‑141 (MQ=255)

         cTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTaaa                                                                                                                                   >  1:696467/1‑141 (MQ=255)

         cTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTaaa                                                                                                                                   >  1:696570/1‑141 (MQ=255)

          tAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAAt                                                                                                                                  <  2:658825/141‑1 (MQ=255)

            gctgatccagagatgattaaagcacttacaagcagagaattagatgtttaatcataatataacaaagtaaatcatttacattacactaacctgaaacatagactttaacatccaagtttcaggttaGTGTAATGTAAATGa                                                                                                                                <  1:746470‑M2/15‑1 (MQ=255)

            aTTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGa                                                                                                                                >  1:139536/1‑141 (MQ=255)

            aTTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGa                                                                                                                                >  1:336598/1‑141 (MQ=255)

               ataACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGAttt                                                                                                                             >  3:250165/1‑141 (MQ=255)

                 aaCCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTAc                                                                                                                           >  1:858572/1‑141 (MQ=255)

                    tttAGTTATGTTATTACATAATATAAAAATATATAATAACTTATTTTTTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATTCATGTTTCAGGTTAGTGTAATGTAAATGATTTACttt                                                                                                                        <  4:436126/140‑1 (MQ=255)

                    cTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACttt                                                                                                                        <  1:837864/141‑1 (MQ=255)

                      tAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGt                                                                                                                      >  3:440081/1‑141 (MQ=255)

                            cGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTAtatt                                                                                                                <  2:951075/141‑1 (MQ=255)

                                       aataTAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACa                                                                                                     >  4:285523/1‑141 (MQ=255)

                                         tataAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATc                                                                                                   <  4:407500/141‑1 (MQ=255)

                                             aaaaTATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAAt                                                                                               <  2:216924/141‑1 (MQ=255)

                                                   tataATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTg                                                                                         >  2:688815/1‑141 (MQ=255)

                                                       ataaCTTATTTGATTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATACAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAATATCTAATTCTCTGCTTg                                                                                     >  1:696387/1‑141 (MQ=255)

                                                        taaCTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGt                                                                                    <  2:297847/141‑1 (MQ=255)

                                                              aTTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGc                                                                              >  2:858634/1‑141 (MQ=255)

                                                              aTTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGc                                                                              >  1:410258/1‑141 (MQ=255)

                                                               tttGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGATACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTTATGTAAATGATTTATTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAATTGCt                                                                             >  3:31215/1‑141 (MQ=255)

                                                                 tgcttgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCttt                                                                           >  1:983972/1‑141 (MQ=255)

                                                                 tgcttgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCttt                                                                           <  1:97264/141‑1 (MQ=255)

                                                                 tgcttgctCCTTTCACTTTTTAAGAGTAAAAAATAACCAGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCttt                                                                           <  2:900400/141‑1 (MQ=255)

                                                                    ttgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAAAATCTAATTCTCTGCTTGTAAGTGCTTTAat                                                                        >  1:912776/1‑141 (MQ=255)

                                                                     tgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAatc                                                                       <  1:871070/141‑1 (MQ=255)

                                                                     tgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAatc                                                                       >  1:1037360/1‑141 (MQ=255)

                                                                     tgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAatc                                                                       >  1:773150/1‑141 (MQ=255)

                                                                     tgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAatc                                                                       >  1:572813/1‑141 (MQ=255)

                                                                     tgctCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAACGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAatc                                                                       >  4:434119/1‑141 (MQ=255)

                                                                          cTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCAtctc                                                                  <  4:54957/141‑1 (MQ=255)

                                                                           tttCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATctct                                                                 >  4:326437/1‑141 (MQ=255)

                                                                             tCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACCTTAACATCCAAGTTACAGGTCAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTCCTTGTAACTGCTTCAATCATctctcg                                                               >  2:99293/1‑139 (MQ=255)

                                                                              cACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGa                                                              <  1:930935/141‑1 (MQ=255)

                                                                              cACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGa                                                              <  2:571547/141‑1 (MQ=255)

                                                                                cTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATc                                                            <  3:97611/141‑1 (MQ=255)

                                                                                 tttttAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCa                                                           >  1:903932/1‑141 (MQ=255)

                                                                                   tcatttacattacacTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGc                                                         <  1:746470‑M1/126‑1 (MQ=255)

                                                                                    ttAAGAGTAAAAAATAACCTGAAACATAGACTTTAACAGCCCATTTTAAGGAAAGTGTAATGTAAATGATTTACTTTGTTATACTATGATTAAACATATAATTCTCTGCTCGTAATTACTTTAAGCACCGCTGGGACAGct                                                        >  4:76341/1‑140 (MQ=255)

                                                                                     tAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCAt                                                       >  2:26756/1‑141 (MQ=255)

                                                                                       agagTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCAtgt                                                     >  1:525737/1‑141 (MQ=255)

                                                                                        gagTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCAtgtg                                                    <  4:300797/141‑1 (MQ=255)

                                                                                          cattacacTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTgag                                                  <  1:768323‑M1/133‑1 (MQ=255)

                                                                                          atAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTgag                                                  <  2:630753/140‑1 (MQ=255)

                                                                                          atAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTgag                                                  <  2:899495/140‑1 (MQ=255)

                                                                                           tttttaaTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAGATGATTTACTTTGTTATTTTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTgaga                                                 >  2:577128/6‑141 (MQ=255)

                                                                                           tAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTgaga                                                 >  1:156153/1‑141 (MQ=255)

                                                                                              aaaaTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGaaaa                                              >  3:113687/1‑141 (MQ=255)

                                                                                               cacTAACCTGAAACTTGGATGTTAAAGTCTATGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGaaaaa                                             <  2:199405‑M1/138‑1 (MQ=255)

                                                                                               aaaTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGaaaaa                                             >  1:236370/1‑141 (MQ=255)

                                                                                                aaTAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAAt                                            >  3:408434/1‑141 (MQ=255)

                                                                                                  TAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGTATGTGAGAAAAATTg                                          <  4:334362‑M1/141‑1 (MQ=255)

                                                                                                   AACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTgg                                         <  3:206839‑M1/141‑1 (MQ=255)

                                                                                                    acctgaaacttggatgttaaagtctatgtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGc                                        >  1:962430‑M2/39‑141 (MQ=255)

                                                                                                    ACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGGTTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGc                                        <  1:1061689‑M1/141‑1 (MQ=255)

                                                                                                    ACCTGAAACATAGACTTTAACATCCAAGTTCCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGc                                        >  1:3213‑M1/1‑141 (MQ=255)

                                                                                                     CCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCt                                       >  3:292177‑M1/1‑141 (MQ=255)

                                                                                                     CCTGAAACACAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCt                                       <  2:532200‑M1/141‑1 (MQ=255)

                                                                                                        gaaacttggatgttaaagtctatgtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTAtt                                    >  2:464790‑M2/35‑141 (MQ=255)

                                                                                                           ACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACt                                 >  2:643098‑M1/1‑141 (MQ=255)

                                                                                                             ttggatgttaaagtctatgtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACttt                               >  2:738899‑M2/30‑141 (MQ=255)

                                                                                                             aTAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACttt                               <  4:127865/141‑1 (MQ=255)

                                                                                                               ggatgttaaagtctatgtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTttct                             >  1:768938‑M2/28‑141 (MQ=255)

                                                                                                               ggatgttaaagtctatgtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTttct                             >  2:419023‑M2/28‑141 (MQ=255)

                                                                                                                gACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGt                                                                                >  3:202732/1‑89 (MQ=255)

                                                                                                                gACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGt                                                                                <  4:202732/89‑1 (MQ=255)

                                                                                                                gACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTttctt                            <  1:285772/141‑1 (MQ=255)

                                                                                                                gACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTttctt                            >  1:378141/1‑141 (MQ=255)

                                                                                                                 aCTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTttcttc                           >  3:62725/1‑141 (MQ=255)

                                                                                                                    ttAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTaa                        <  2:963350/141‑1 (MQ=255)

                                                                                                                    ttAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTaa                        >  2:269525/1‑141 (MQ=255)

                                                                                                                         aTCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCg                   <  1:798345/141‑1 (MQ=255)

                                                                                                                         aTCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCg                   <  3:179102/141‑1 (MQ=255)

                                                                                                                         aTCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCg                   <  3:400510/141‑1 (MQ=255)

                                                                                                                          tCCAAGTTTCAGGTTAGTGTAATGTNAATGATTNANTNTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAANGttgg                  >  1:134899/1‑138 (MQ=255)

                                                                                                                            cAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCaa                >  1:668711/1‑141 (MQ=255)

                                                                                                                            cAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCaa                >  2:803334/1‑141 (MQ=255)

                                                                                                                             aaGTTTCAGGTTAGTGTAATGTAAATTATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTCATCTTCTCTGGAAAAAAAAAAAAAAAAAATTGGCTATTACTTTCTTCTAATGTCGCAAt               <  2:777371/141‑1 (MQ=255)

                                                                                                                             aaGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAAt               <  3:306541/141‑1 (MQ=255)

                                                                                                                               gtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAATTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAAttt             >  1:758839‑M2/12‑141 (MQ=255)

                                                                                                                               gtttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAAttt             <  2:427276‑M2/130‑1 (MQ=255)

                                                                                                                                tttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAACCATCTCATTCTCTACTTGTAAGTGCTTTAATCATCTCTGGTTCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATttg            <  3:18217‑M2/131‑1 (MQ=255)

                                                                                                                                tttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATttg            <  2:502714‑M2/131‑1 (MQ=255)

                                                                                                                                tttcaggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATttg            <  1:1087025‑M2/131‑1 (MQ=255)

                                                                                                                                   caggttaGTGTAATGTAAAGGATTTACTTTGTTATATTATGATTAAAAATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTCTTACTTTCTTCTCATCTCGCAAtttgttc         >  4:61632‑M2/8‑140 (MQ=255)

                                                                                                                                    aggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTtgttgt        >  1:661737‑M2/7‑141 (MQ=255)

                                                                                                                                     ggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTgttgtt       <  1:581929‑M2/136‑1 (MQ=255)

                                                                                                                                     ggttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTgttgtt       >  1:220262‑M2/6‑141 (MQ=255)

                                                                                                                                      gttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGttt      >  3:221669‑M2/5‑141 (MQ=255)

                                                                                                                                       ttaGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTa     <  1:199405‑M2/138‑1 (MQ=255)

                                                                                                                                         aGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTTGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTatt   >  4:191432‑M2/2‑140 (MQ=255)

                                                                                                                                         aGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATc   <  2:410258‑M2/140‑1 (MQ=255)

                                                                                                                                         aGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATc   <  2:674716‑M2/140‑1 (MQ=255)

                                                                                                                                          gtgtAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTAtct  <  1:1003444/141‑1 (MQ=255)

ATTAATTATCTAATTATAACCTTAGTTACGTTATTACATAATATAAAAATATATAATAACTTATTTGCTTGCTCCTTTCACTTTTTAAGAGTAAAAAATAACCTGAAACATAGACTTTAACATCCAAGTTTCAGGTTAGTGTAATGTAAATGATTTACTTTGTTATATTATGATTAAACATCTAATTCTCTGCTTGTAAGTGCTTTAATCATCTCTGGATCAGCATGTGAGAAAAATTGGCTATTACTTTCTTCTAATGTCGCAATTTGTTGTTTATCT  >  USA300TCH1516_ALE/2336327‑2336605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.