BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2780748 =	122 (0.980)	3 (0.030)	3/244	NT	2.5%	intergenic (‑22/+69)	arcD_2/arcB_2	Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic
*	?	USA300TCH1516_ALE	2780797 =	121 (1.030)	3 (0.030)	3/244	NT	2.5%	intergenic (‑71/+20)	arcD_2/arcB_2	Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic
Rejected: Frequency below/above cutoff threshold.

Only 100 of 162 total aligned reads displayed.

AATCATGGATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAAT  >  USA300TCH1516_ALE/2780658‑2780937

  tCATGGATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACAtcatattcata                                                                                                                                           <  1:512415/141‑1 (MQ=255)

   cATGGATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACAtcatattcatat                                                                                                                                          <  4:274984/141‑1 (MQ=255)

     tGGATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCg                                                                                                                                        >  3:65865/1‑141 (MQ=255)

      ggATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGt                                                                                                                                       >  1:13095/1‑141 (MQ=255)

      ggATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTGTGTTATCTCCTGATTCGTTCGTATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACCCCTCATATTCATATctt                                                                                                                                       <  2:459296/141‑3 (MQ=255)

          ccTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCa                                                                                                                                   <  2:961870/141‑1 (MQ=255)

          ccTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCa                                                                                                                                   >  1:62537/1‑141 (MQ=255)

           cTATAACTCGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCAt                                                                                                                                  <  2:227238/141‑1 (MQ=255)

             ataACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCAttt                                                                                                                                >  1:853227/1‑141 (MQ=255)

                aCTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGt                                                                                                                             >  3:203134/1‑141 (MQ=255)

                      ccAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTaa                                                                                                                       <  1:82651/141‑1 (MQ=255)

                       cAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAAc                                                                                                                      <  1:447565/141‑1 (MQ=255)

                         aTTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTc                                                                                                                    >  1:135166/1‑141 (MQ=255)

                           tAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTccc                                                                                                                  >  2:689866/1‑141 (MQ=255)

                            aaaGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTcccc                                                                                                                 >  2:587046/1‑141 (MQ=255)

                            aaaGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTcccc                                                                                                                 <  2:363105/141‑1 (MQ=255)

                             aagaagATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCa                                                                                                                >  1:1033416/1‑141 (MQ=255)

                              agaagaTTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAANTCCCCaa                                                                                                               >  2:814199/1‑141 (MQ=255)

                              agaagaTTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCaa                                                                                                               >  2:731797/1‑141 (MQ=255)

                                     ttACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTtgct                                                                                                        <  2:526062/141‑1 (MQ=255)

                                      tACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTtgctg                                                                                                       >  2:262747/1‑141 (MQ=255)

                                       aCTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTtgctgc                                                                                                      <  2:273060/141‑1 (MQ=255)

                                       aCTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTtgctgc                                                                                                      >  4:395541/1‑141 (MQ=255)

                                        cTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGcc                                                                                                     >  2:919425/1‑141 (MQ=255)

                                          gAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCAt                                                                                                   <  2:1009733/141‑1 (MQ=255)

                                              ttGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACt                                                                                               <  4:419931/141‑1 (MQ=255)

                                              ttGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACt                                                                                               <  2:865140/141‑1 (MQ=255)

                                               tGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTg                                                                                              >  3:313074/1‑141 (MQ=255)

                                                gTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGc                                                                                             <  2:745563/141‑1 (MQ=255)

                                                 ttATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGcc                                                                                            <  1:897688/141‑1 (MQ=255)

                                                  tATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCt                                                                                           <  2:690237/141‑1 (MQ=255)

                                                  tATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCt                                                                                           >  2:361236/1‑141 (MQ=255)

                                                         tGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGt                                                                                    <  1:885905/141‑1 (MQ=255)

                                                            ttCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATg                                                                                 <  4:277608/141‑1 (MQ=255)

                                                            ttCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATg                                                                                 <  2:10112/141‑1 (MQ=255)

                                                            ttCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATg                                                                                 <  2:570668/141‑1 (MQ=255)

                                                              cGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCa                                                                               >  2:623954/1‑141 (MQ=255)

                                                               gtccATATTCATTTCTACTTTAATACCATTATGAGGTGTCTGTACATGCCACTTATTTCAGCAGGCTCATCCTATTCATATCGCTCCATTTAGTGATTAGCTCCCCAAAGTTGCAGCCATTACGGCCTTAACTGTATGCAt                                                                              <  2:768957/138‑1 (MQ=255)

                                                               gTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCAt                                                                              >  2:61913/1‑141 (MQ=255)

                                                               gTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCAt                                                                              <  4:59310/141‑1 (MQ=255)

                                                                ttCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGAACCATAATATTCATATCGTCCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCAtt                                                                             <  1:919270/141‑1 (MQ=255)

                                                                 tCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTc                                                                            <  1:671717/141‑1 (MQ=255)

                                                                  cATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCt                                                                           >  4:433985/1‑141 (MQ=255)

                                                                    tatTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGAAACTTATATCGTCAGACACATAATATTCATATCGTTCCATTCAGTGATTAACTCACTAATGTTGCTGATCTTAATGCCTTAATTTTATGCATTCTAt                                                                         >  2:50932/1‑141 (MQ=255)

                                                                        cATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTc                                                                     >  3:450509/1‑141 (MQ=255)

                                                                        cATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTc                                                                     >  2:529542/1‑141 (MQ=255)

                                                                         aTTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTCTGCATTCTATTTTCa                                                                    >  2:861818/1‑141 (MQ=255)

                                                                         aTTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTcc                                                                    >  2:293901/1‑140 (MQ=255)

                                                                            tctcCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCt                                                                 >  1:129769/1‑141 (MQ=255)

                                                                                cTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGAt                                                             >  2:95085/1‑141 (MQ=255)

                                                                                  ttAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCa                                                           <  2:853227/141‑1 (MQ=255)

                                                                                     aTACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAac                                                        <  1:958782/141‑1 (MQ=255)

                                                                                      tACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAaca                                                       <  3:257880/141‑1 (MQ=255)

                                                                                       aCCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAacac                                                      <  1:726198/141‑1 (MQ=255)

                                                                                         cAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACtt                                                    <  2:109732/141‑1 (MQ=255)

                                                                                          AATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACttt                                                   <  2:174009‑M1/141‑1 (MQ=255)

                                                                                          AATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACttt                                                   <  1:353882‑M1/141‑1 (MQ=255)

                                                                                          AATATGAGGTGTCTGTACATGACACTTATATCATCAGACACAGCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACttt                                                   <  2:334932‑M1/141‑1 (MQ=255)

                                                                                           atatgatgtgtctgatgatataagtgtcatgtacagacacctcatattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACtttt                                                  >  3:446297‑M2/49‑141 (MQ=255)

                                                                                           ATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACtttt                                                  >  3:27087‑M1/1‑141 (MQ=255)

                                                                                           ATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACtttt                                                  <  2:354549‑M1/141‑1 (MQ=255)

                                                                                            tatgatgtgtctgatgatataagtgtcatgtacagacacctcatattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTg                                                 >  3:100631‑M2/48‑141 (MQ=255)

                                                                                            TATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTg                                                 >  2:334337‑M1/1‑141 (MQ=255)

                                                                                             ATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGa                                                <  3:217903‑M1/141‑1 (MQ=255)

                                                                                              tgatgtgtctgatgatataagtgtcatgtacagacacctcatattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGaa                                               >  2:479825‑M2/46‑141 (MQ=255)

                                                                                              TGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGaa                                               <  1:536362‑M1/141‑1 (MQ=255)

                                                                                               GAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAAt                                              <  1:1021524‑M1/141‑1 (MQ=255)

                                                                                               GAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAAt                                              <  2:757492‑M1/141‑1 (MQ=255)

                                                                                                AGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATg                                             <  3:115346‑M1/141‑1 (MQ=255)

                                                                                                AGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGAATTCTATTTTCAGCTTGATCAAATAATTTTGAATg                                             <  1:195899‑M1/141‑1 (MQ=255)

                                                                                                 ggTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGt                                            >  2:470276/1‑141 (MQ=255)

                                                                                                  gtgtCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGtt                                           <  1:455678/141‑1 (MQ=255)

                                                                                                  gtgtCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAACGtt                                           >  2:833769/1‑141 (MQ=255)

                                                                                                   tgtCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTc                                          <  4:325379/141‑1 (MQ=255)

                                                                                                     tCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCAc                                        >  3:104390/1‑141 (MQ=255)

                                                                                                     tCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCAc                                        <  1:285608/141‑1 (MQ=255)

                                                                                                         tACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCa                                                           <  2:935846/118‑1 (MQ=255)

                                                                                                         tACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCa                                                           >  1:935846/1‑118 (MQ=255)

                                                                                                           cATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTaa                                  <  3:192156/141‑1 (MQ=255)

                                                                                                                cacTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGAtt                             >  4:249865/1‑141 (MQ=255)

                                                                                                                cacTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGAtt                             >  3:84904/1‑141 (MQ=255)

                                                                                                                 acTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGAttt                            >  1:202468/1‑141 (MQ=255)

                                                                                                                 acTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGAttt                            >  2:218271/1‑141 (MQ=255)

                                                                                                                  cTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCACTGTTGCTGCCATTACTCACTTAATCATATGCCTTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTg                           >  3:339772/1‑141 (MQ=255)

                                                                                                                     atatCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTc                        >  2:557507/1‑141 (MQ=255)

                                                                                                                     atatCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTc                        >  2:399888/1‑141 (MQ=255)

                                                                                                                      tatCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCt                       >  3:185489/1‑141 (MQ=255)

                                                                                                                        tcatcaGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGt                     >  1:261943/1‑141 (MQ=255)

                                                                                                                         catcaGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTa                    >  3:281648/1‑141 (MQ=255)

                                                                                                                             aGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACtt                <  4:313074/141‑1 (MQ=255)

                                                                                                                              gACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTAAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTc               <  2:433425/141‑1 (MQ=255)

                                                                                                                                  catcatATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCAtt           <  2:925153/141‑1 (MQ=255)

                                                                                                                                  catcatATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCAtt           >  3:448866/1‑141 (MQ=255)

                                                                                                                                   atcatATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCAttt          >  2:1030955/1‑141 (MQ=255)

                                                                                                                                       tattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGc      >  3:354440‑M2/5‑141 (MQ=255)

                                                                                                                                       tattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGc      >  1:859423‑M2/5‑141 (MQ=255)

                                                                                                                                       tattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCAATTACTGCCTTAATTGTATGAATTCTATTTTAAGCTTGATCACAGCCTTTTGCATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGc      >  1:702572‑M2/5‑141 (MQ=255)

                                                                                                                                        attCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCt     <  2:129769‑M2/138‑1 (MQ=255)

                                                                                                                                          tCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTaa   >  1:549127‑M2/2‑141 (MQ=255)

                                                                                                                                          tCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTaa   <  1:62101‑M2/140‑1 (MQ=255)

AATCATGGATCCTATAACTAGTCCAATTAAAGAAGATTTACTGAGTTTGTTATCTCCTGATTCGTTCATATTCATTTCTCCTTTAATACCAATATGAGGTGTCTGTACATGACACTTATATCATCAGACACATCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAAT  >  USA300TCH1516_ALE/2780658‑2780937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.