BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 997	538 (0.970)	3 (0.010)	4/238	NT	0.60%	intergenic (+9/+6)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
*	?	NC_012417	= 1001	505 (1.000)	3 (0.010)	4/238	NT	0.60%	intergenic (+13/+2)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 634 total aligned reads displayed.

TTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGA  >  NC_012417/857‑1137

   tAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGtt                                                                                                                                            >  2:111217/1‑141 (MQ=255)

    aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑TCATTAGTGtta                                                                                                                                           >  1:161662/1‑140 (MQ=255)

    aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTg                                                                                                                                           >  2:195980/1‑141 (MQ=255)

      aCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACCCTCCCCCCCCGCTATGTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTGGTGTTgcc                                                                                                                                         >  1:15410/1‑139 (MQ=14)

      aCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGac                                                                                                                                         <  2:271952‑M2/141‑3 (MQ=255)

          ggaCGATGTCGAAGATGGTAATTTGATGAATGCAAGTGATGAAGACAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACAGTAGTGTTTactaat                                                                                                                                     >  1:381962‑M2/2‑135 (MQ=255)

           gACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatg                                                                                                                                    <  2:324680‑M2/141‑8 (MQ=255)

             cGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatgtc                                                                                                                                  <  2:320402‑M2/141‑10 (MQ=255)

             cGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatgtc                                                                                                                                  <  2:160875‑M2/141‑10 (MQ=255)

              gATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTAGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatgtct                                                                                                                                 <  2:393121‑M2/141‑11 (MQ=255)

                tGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCttt                                                                                                                              <  1:184076/141‑1 (MQ=255)

                 gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAGATTAATATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttt                                                                                                                             >  1:76036/1‑141 (MQ=255)

                 gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttt                                                                                                                             >  1:34142/1‑141 (MQ=255)

                 gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttt                                                                                                                             >  1:41808/1‑141 (MQ=255)

                  tCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCTAAAAGCAAAATT‑CTACTGAAGAACATGATGGTTGACTAATG‑TCttttt                                                                                                                            <  1:80381/141‑1 (MQ=17)

                    gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                          >  2:255221/1‑141 (MQ=255)

                    gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                          >  1:355726/1‑141 (MQ=255)

                    gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                          >  2:61979/1‑141 (MQ=255)

                      aGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttgtt                                                                                                                        >  1:377001/1‑141 (MQ=255)

                      aGATGGTAATTTGATTAATGCAAGTGATGAAGAAAAAACAACAGCCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttgtt                                                                                                                        >  2:137058/1‑141 (MQ=255)

                             aaTTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGAttttt                                                                                                                 >  2:79686/1‑141 (MQ=255)

                             aaTTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑AAATTAGTGTTGACTAATG‑TCTTTTTTGTTAAttttt                                                                                                                 >  2:233284/1‑141 (MQ=255)

                             aaTTTGATCAATGCAAGAGATGAAGATAAAACAACAGACGAAAAAGAAAAAGCACATTCAATTACCGCCATGTGGAATTTCGAAACGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGAttttt                                                                                                                 <  1:146382/141‑1 (MQ=18)

                                ttGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTtat                                                                                                              >  2:173585/1‑141 (MQ=255)

                                ttGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTtat                                                                                                              <  1:235830/141‑1 (MQ=255)

                                       aTGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAGTG‑TCTTTTTTGTTGATTTTTTATAAAAAAg                                                                                                       <  2:301078/141‑1 (MQ=255)

                                              tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTc                                                                                                >  1:123823/1‑141 (MQ=255)

                                              tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTc                                                                                                <  1:97018/141‑1 (MQ=255)

                                              agatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTc                                                                                                <  2:263652/140‑1 (MQ=255)

                                               gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                               <  1:71193/141‑1 (MQ=255)

                                               gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                               <  1:113483/141‑1 (MQ=255)

                                               gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                               <  1:371987/141‑1 (MQ=255)

                                               gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                               <  1:360079/141‑1 (MQ=255)

                                               aatgaATATAAAACAACAGAACAAAAAGAAAAAGCACATTCAATTACCGCAATTTGTAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                               <  2:92818/140‑1 (MQ=18)

                                                atgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGAT‑CGTCGTGTTGGTTTTTGTTGATTTTTTATAAAAAAGTACTGTCtt                                                                                              >  2:184900/1‑141 (MQ=17)

                                                      aTAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAttttt                                                                                        <  2:108416/141‑1 (MQ=255)

                                                        aaaaCAACAGATGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTCTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgt                                                                                      <  2:282669/141‑1 (MQ=255)

                                                         aatcaagaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgtg                                                                                     <  2:316428/138‑1 (MQ=255)

                                                         aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgtg                                                                                     <  1:318763/141‑1 (MQ=255)

                                                         aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgtg                                                                                     >  1:20938/1‑141 (MQ=255)

                                                          agcaacaGACGAAGAAGAAAGAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATACTTGAAATTTTAGGGCTGTCTTATTTTTGTGa                                                                                    <  2:337858/139‑1 (MQ=17)

                                                          aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGTCTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                    <  1:89962/141‑1 (MQ=255)

                                                          aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                    <  1:120218/141‑1 (MQ=255)

                                                           acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAc                                                                                   <  1:224199/141‑1 (MQ=255)

                                                             aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                                 <  1:287643/141‑1 (MQ=255)

                                                             aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                                 <  1:406833/141‑1 (MQ=255)

                                                             aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                                 <  2:242693/141‑1 (MQ=255)

                                                             aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTCTTGTTCATTTTTTATAAAAATGTACTGTCTTATTTTTCTGAcca                                                                                 >  2:410043/1‑139 (MQ=255)

                                                              acaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                                                                <  1:295573/141‑1 (MQ=255)

                                                              acaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                                                                >  2:400012/1‑141 (MQ=255)

                                                                  aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                                                            <  1:32398/141‑1 (MQ=255)

                                                                      agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtat                                                                        >  2:285260/1‑141 (MQ=255)

                                                                          gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                    >  1:352408/1‑141 (MQ=255)

                                                                             aaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAgtgt                                                                 <  1:398798/141‑1 (MQ=255)

                                                                              aaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTc                                                                >  2:362013/1‑141 (MQ=255)

                                                                               aGCACAGTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATGAGTGGTGACTAATG‑TCTTTTTTGTTGATTTTGTATAAAAAAGTACTGTTTTATTGTTTTTTCAAATGCTGTATGTAGTGTca                                                               <  1:170471/141‑1 (MQ=17)

                                                                                gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcac                                                              <  1:271952/141‑1 (MQ=255)

                                                                                  acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                            <  2:23981/141‑1 (MQ=255)

                                                                                     ttCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaaa                                                         <  1:139428/141‑1 (MQ=255)

                                                                                      tCAATTACTGCAATTTGGAATTTAGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                        <  2:156498/141‑1 (MQ=255)

                                                                                       aaaTGACCGCAATGTGGAATTGCGAGAAGCAAAATTATTATTTAAG‑ACAGTAGTGTTGACTAGTG‑TCTTTCTTGTTGATTTGTTATAAAAAAGCCCTTTCTTATTTTTGTGACAAATTCTGTATGTAGTGTCACAAAAATa                                                       <  1:177527/140‑1 (MQ=17)

                                                                                        aaTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                      <  2:29213/141‑1 (MQ=255)

                                                                                        aaTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                      <  2:226154/141‑1 (MQ=255)

                                                                                         aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTgttgactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttttttttcgtctgttgtttt                                                      >  1:191325‑M1/1‑52 (MQ=255)

                                                                                         aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                     <  2:20938/141‑1 (MQ=255)

                                                                                         aTTAACGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                     <  2:114378/141‑1 (MQ=255)

                                                                                          ttACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                    <  1:232407/141‑1 (MQ=255)

                                                                                               gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTGTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAAc                                               >  1:277222/1‑141 (MQ=255)

                                                                                                 aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTTTTTTTTTTTCTGTATGTAGTGTCACAAAAATAATATAAACgg                                             >  2:306317/1‑140 (MQ=18)

                                                                                                  aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                            >  2:371988/1‑141 (MQ=255)

                                                                                                  aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                            <  1:256171/141‑1 (MQ=255)

                                                                                                  aTTTGGAATTTCGAAAAGCAAAATTAGGATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                            <  1:364833/141‑1 (MQ=255)

                                                                                                   tttGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                           >  2:219578/1‑141 (MQ=255)

                                                                                                      ggAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAATAAGTATTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGCCAAACGAAatat                                        >  2:147768/1‑141 (MQ=255)

                                                                                                      ggAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                        <  1:247942/141‑1 (MQ=255)

                                                                                                       gAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                       >  2:31063/1‑141 (MQ=255)

                                                                                                        aaTTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                      >  2:54534/1‑141 (MQ=255)

                                                                                                          tttCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAGCGCAATATATtg                                    >  1:105095/1‑141 (MQ=255)

                                                                                                           ttCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtgt                                   <  1:217412/141‑1 (MQ=255)

                                                                                                            tCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtgtg                                  >  1:388596/1‑141 (MQ=255)

                                                                                                             cGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTgtgt                                 <  1:133842/141‑1 (MQ=255)

                                                                                                                aaaGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATACAAAAGTACTGGCAGATCTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTccc                              >  1:57306/1‑139 (MQ=25)

                                                                                                                   gtaatattattattTAAG‑TGTTTAGTGTTGAGTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACaaa                           <  2:122179/136‑1 (MQ=25)

                                                                                                                       aaTTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATa                       <  2:213031/141‑1 (MQ=255)

                                                                                                                         ttattattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAg                     <  1:65313/141‑1 (MQ=255)

                                                                                                                          tattattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGGATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGa                    <  1:261013/141‑1 (MQ=255)

                                                                                                                          tattattGACG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGa                    <  1:130461/141‑1 (MQ=255)

                                                                                                                             tattTAAG‑ACAGTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAg                 <  1:142443/141‑1 (MQ=255)

                                                                                                                               tttAAG‑ACATTAGTGTTGACTAATT‑TCTTTTTTGTTGATTGTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTa               <  2:45824/141‑1 (MQ=255)

                                                                                                                                 tAAT‑ACATTATTGTTGATTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa             <  1:101168/141‑1 (MQ=255)

                                                                                                                                  aaG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg            <  1:332520/141‑1 (MQ=255)

                                                                                                                                   aataCATTAGTGTTGAGTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg            <  2:87646/138‑1 (MQ=255)

                                                                                                                                    g‑ACATTAGTcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttcttcttcgtctgttgttttatcttcatcacttgcattaatcaaattactatcttcgccatag           >  2:13126‑M1/1‑9 (MQ=255)

                                                                                                                                    g‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt          >  1:52278/1‑141 (MQ=255)

                                                                                                                                         ttAGTcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttcttcttcgtctgttgttttatattcatcactttcattaatcaaattaccatcttagacatcgtcta       >  2:384951‑M1/1‑5 (MQ=255)

                                                                                                                                         ttAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt      <  1:314086/141‑1 (MQ=255)

                                                                                                                                          tAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa     <  1:195980/141‑1 (MQ=255)

                                                                                                                                            gtgtTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg   <  1:267545/141‑1 (MQ=255)

                                                                                                                                            gtgtTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTATATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg   >  1:401768/1‑141 (MQ=255)

                                                                                                                                            gTcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttcttcttcgtctgttgttttatcttcatcacttgcattaatcaaattaccatcttctacatcgtctaagt    >  2:347010‑M1/1‑2 (MQ=255)

TTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGA  >  NC_012417/857‑1137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.