BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 997	538 (0.970)	3 (0.010)	4/238	NT	0.60%	intergenic (+9/+6)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
*	?	NC_012417	= 1001	505 (1.000)	3 (0.010)	4/238	NT	0.60%	intergenic (+13/+2)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 602 total aligned reads displayed.

AAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATC  >  NC_012417/861‑1141

aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTg                                                                                                                                               <  1:270343/141‑1 (MQ=255)

aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTg                                                                                                                                               >  2:195980/1‑141 (MQ=255)

     tAGACGATGTCTAAGATGGTAATTTGATTAATGAAAGTGATGAATATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaa                                                                                                                                          >  2:384951‑M2/1‑136 (MQ=255)

         ctatgGCGAAGATAGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatgtc                                                                                                                                      >  2:13126‑M2/3‑132 (MQ=255)

          gATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGaccaatgtct                                                                                                                                     <  2:110865‑M2/141‑11 (MQ=255)

          gATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTAACGCCGTTTGGAAGTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGactaatgtct                                                                                                                                     <  1:193329‑M2/141‑11 (MQ=255)

            tGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCttt                                                                                                                                  >  1:1448/1‑141 (MQ=255)

             gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAGATTAATATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttt                                                                                                                                 >  1:76036/1‑141 (MQ=255)

             gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttt                                                                                                                                 >  1:41808/1‑141 (MQ=255)

              tCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCTAAAAGCAAAATT‑CTACTGAAGAACATGATGGTTGACTAATG‑TCttttt                                                                                                                                <  1:80381/141‑1 (MQ=17)

               cGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCtttttt                                                                                                                               <  1:360094/141‑1 (MQ=255)

                gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                              >  2:255221/1‑141 (MQ=255)

                gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                              >  2:61979/1‑141 (MQ=255)

                gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttg                                                                                                                              >  2:1151/1‑141 (MQ=255)

                 aaGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttgt                                                                                                                             >  1:337200/1‑141 (MQ=255)

                 aaGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTttgt                                                                                                                             >  1:29213/1‑141 (MQ=255)

                       gTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGAttt                                                                                                                       >  2:13810/1‑141 (MQ=255)

                         aaTTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑AAATTAGTGTTGACTAATG‑TCTTTTTTGTTAAttttt                                                                                                                     >  2:233284/1‑141 (MQ=255)

                                ttAATGCACGTGATGAAGACAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTACTG‑TCTTTTTTGTTGATTTTTTATaaaa                                                                                                              <  2:321435/141‑1 (MQ=255)

                                ttAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATaaaa                                                                                                              <  1:120540/141‑1 (MQ=255)

                                        aGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTg                                                                                                      <  1:105596/141‑1 (MQ=255)

                                         gTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGt                                                                                                     >  1:245350/1‑141 (MQ=255)

                                         gTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGt                                                                                                     >  1:180504/1‑141 (MQ=255)

                                          tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAGTTACCTCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTc                                                                                                    <  2:86920/141‑1 (MQ=255)

                                          agatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTc                                                                                                    <  2:263652/140‑1 (MQ=255)

                                           gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCt                                                                                                   <  1:71193/141‑1 (MQ=255)

                                           gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATCTTTTTTATAAAAGTACTGTCt                                                                                                   >  2:163605/1‑141 (MQ=255)

                                            atgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGAT‑CGTCGTGTTGGTTTTTGTTGATTTTTTATAAAAAAGTACTGTCtt                                                                                                  >  2:184900/1‑141 (MQ=17)

                                             tgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTCTTTTAG‑AGTTTATTGTTTACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTa                                                                                                 <  1:158620/141‑1 (MQ=18)

                                             tgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTa                                                                                                 >  1:126422/1‑141 (MQ=255)

                                                  aTAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAttttt                                                                                            >  1:377308/1‑141 (MQ=255)

                                                    aaaaCAACAGATGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTCTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgt                                                                                          <  2:282669/141‑1 (MQ=255)

                                                     aatcaagaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgtg                                                                                         <  2:316428/138‑1 (MQ=255)

                                                     aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgtg                                                                                         >  1:402277/1‑141 (MQ=255)

                                                     aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTtgag                                                                                         <  2:72741/141‑3 (MQ=255)

                                                      aacaacCGACGAAGAAGAAAAAGCACATGCAATTACCGCAATTTGGAAGTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                        <  1:355966/141‑1 (MQ=255)

                                                      aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGTAATTTCGAAAATCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                        <  2:304685/141‑1 (MQ=255)

                                                      aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGTCTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                        <  1:89962/141‑1 (MQ=255)

                                                      aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAttttttttt                                                                                        >  2:149027/1‑137 (MQ=255)

                                                      aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGa                                                                                        <  1:151588/141‑1 (MQ=255)

                                                       acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAc                                                                                       <  2:211789/141‑1 (MQ=255)

                                                       acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAc                                                                                       <  1:365600/141‑1 (MQ=255)

                                                       acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAc                                                                                       <  1:399129/141‑1 (MQ=255)

                                                        caacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTCGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACa                                                                                      >  1:280349/1‑141 (MQ=255)

                                                         aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                                     <  1:406833/141‑1 (MQ=255)

                                                          acaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                                                                    >  2:219274/1‑141 (MQ=255)

                                                             gACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATAATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTAATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATgt                                                                                 >  2:46272/1‑140 (MQ=255)

                                                              aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                                                                <  1:130717/141‑1 (MQ=255)

                                                              aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                                                                >  1:315790/1‑141 (MQ=255)

                                                              aCGAAGAAGAAAAAGCACATTCAATTACCGCAACTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAGATGCt                                                                                >  1:166052/1‑141 (MQ=255)

                                                                gaagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt                                                                              <  1:2585/141‑1 (MQ=255)

                                                                  agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtat                                                                            >  2:285260/1‑141 (MQ=255)

                                                                   gaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                                                           <  2:338933/141‑1 (MQ=255)

                                                                     agaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgtt                                                                         >  1:386085/1‑140 (MQ=255)

                                                                        aaaaGCAATTTCAATTTTCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAgtg                                                                      <  2:352099/141‑1 (MQ=255)

                                                                             cacaTTCAATTACCGCAATTCGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                 <  1:223246/141‑1 (MQ=255)

                                                                             caaagtCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                 <  2:240569/136‑1 (MQ=255)

                                                                             aacagtaaaTTAACGGAAGTTGGAATGTAGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATAATTAATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                 <  2:91914/134‑1 (MQ=17)

                                                                              acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑CCATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                                >  2:272825/1‑141 (MQ=255)

                                                                               caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTGGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa                                                               >  1:188010/1‑141 (MQ=255)

                                                                               caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTTTTTTTTTTTTATACAAAAGCCCTGTCTTATTTTTTTGTCGATTGCTGTATGTAATGTCACaac                                                               >  2:105731/1‑140 (MQ=14)

                                                                                aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                                                              <  1:263269/141‑1 (MQ=255)

                                                                                  tCAATTACTGCAATTTGGAATTTAGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                            <  2:156498/141‑1 (MQ=255)

                                                                                    aaTTACCGGAATGTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                          <  2:410352/141‑1 (MQ=255)

                                                                                    aaTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                          <  2:29213/141‑1 (MQ=255)

                                                                                    aaTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                          <  2:226154/141‑1 (MQ=255)

                                                                                     aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                         <  2:20938/141‑1 (MQ=255)

                                                                                      ttAGCGCAATTTGGAATGTCGAAAAACAAAATTATTATTTAAG‑ATATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGTCAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                        <  2:362800/141‑1 (MQ=18)

                                                                                      ttACTGCAATTAGGAATTTCGAAAAGTAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                        <  2:173597/141‑1 (MQ=255)

                                                                                        aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACa                                                      <  1:31983/141‑1 (MQ=255)

                                                                                             aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                                 <  1:274083/141‑1 (MQ=255)

                                                                                              aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                <  1:1151/141‑1 (MQ=255)

                                                                                              aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                >  2:371988/1‑141 (MQ=255)

                                                                                               tttGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                               >  2:299579/1‑141 (MQ=255)

                                                                                                ttGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                              <  1:328231/141‑1 (MQ=255)

                                                                                                 tGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                             >  1:235502/1‑141 (MQ=255)

                                                                                                  ggAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCGGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                            >  1:140018/1‑141 (MQ=255)

                                                                                                   gAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                           >  2:31063/1‑141 (MQ=255)

                                                                                                    aaTTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                          >  2:54534/1‑141 (MQ=255)

                                                                                                    aaTTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                          >  1:172125/1‑141 (MQ=255)

                                                                                                            aaaGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATACAAAAGTACTGGCAGATCTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTccc                                  >  1:57306/1‑139 (MQ=25)

                                                                                                               gCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATAGATTGTGTCACaaa                               <  1:304573/141‑1 (MQ=255)

                                                                                                                    attattattTAAT‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATaa                          <  1:136499/141‑1 (MQ=255)

                                                                                                                     ttattattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAg                         <  1:65313/141‑1 (MQ=255)

                                                                                                                     ttattattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTAAATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAg                         <  1:214738/141‑1 (MQ=255)

                                                                                                                       attattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGAc                       <  1:371988/141‑1 (MQ=255)

                                                                                                                         tattTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTAACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAg                     >  2:24775/1‑141 (MQ=255)

                                                                                                                          attTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGt                    <  1:226926/141‑1 (MQ=255)

                                                                                                                          attTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGt                    >  1:199957/1‑141 (MQ=255)

                                                                                                                            ttAAG‑GCATTAGTGTTGACGAAGG‑TCTTGTTGGTTGATTTTGTAGAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTAc                  <  2:394253/141‑1 (MQ=37)

                                                                                                                             tAAT‑ACATTATTGTTGATTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                 <  1:101168/141‑1 (MQ=255)

                                                                                                                             tAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGAATTTATATAAAGAAGTAATGTATTAATTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAACACAAACGCAATATATTGTGTCACAAAAGTAAGACAGTACa                 <  2:328123/141‑1 (MQ=37)

                                                                                                                                g‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt              >  1:52278/1‑141 (MQ=255)

                                                                                                                                  aCATTAGTGTTGACTAATG‑TCTGTTTTGTAGATATTTTATAAAAAAGTACTGTGTTCTATGAAGAACACATCCTATCTGCATTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt             <  2:400308/141‑1 (MQ=255)

                                                                                                                                     ttAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt          <  1:255221/141‑1 (MQ=255)

                                                                                                                                        gtgtTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAATACAGTACAGCTTTGTATg       >  2:123239/1‑141 (MQ=255)

                                                                                                                                        gtgtTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg       >  1:353849/1‑141 (MQ=255)

                                                                                                                                         tgtTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGa      >  1:348796/1‑141 (MQ=255)

                                                                                                                                           ttGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACACATCATATATGTATTGTAACACACTTTTAAGTAATTCAATATATTGTGTCACAAAAATACGACAGTACAGCTTTGTATGata    >  1:389780/1‑141 (MQ=255)

                                                                                                                                             gACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTTAACTGACGTAGGCAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc  >  1:95574/1‑141 (MQ=37)

AAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG‑ACATTAGTGTTGACTAATG‑TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATC  >  NC_012417/861‑1141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.