BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 4419	54 (0.790)	5 (0.010)	4/262	9.5	1.5%	intergenic (+384/‑81)	USA300HOU_pUSA300HOUMR0006/cadR	hypothetical protein/cadmium binding protein
*	?	NC_012417	= 1946	614 (1.020)	5 (0.010)	4/262	9.5	1.5%	intergenic (+179/+147)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 655 total aligned reads displayed.

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA  >  NC_012417/1807‑2081

 cacaCTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAt                                                                                                                                        >  1:100578/1‑140 (MQ=255)

  acacTGTTTTTTTTTTCCTATTGGTGTTGTTGCTTACTTTTTATTTTTCTATAAAGAGGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATAAAGATTATAACAAATATCCTACGCATTTATGATGAGAAAAtt                                                                                                                                       >  2:231062/1‑140 (MQ=255)

  acacTGTTTTTTTATTCTGATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                       <  1:118556/140‑1 (MQ=255)

  acaaTGTTTTTTTATTCCTATTGGTGTTATTGCTTACTTTTTATATTTAGATAAAGATAATGCTTTTGACGAGATGGAAGAAAAATACGATTATCATGAAAATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                       <  1:55310/140‑1 (MQ=255)

   cacTGTTTTTTTATTCCTAGTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGTAAGTAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                      >  2:258152/1‑140 (MQ=255)

   cacTGTTTTTTTATTCCGATTAGTGTTGTTGCTTACTTTTTGTTTTACTATAAAGATGATGCATTTGACGAGAAGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                      <  1:14105/140‑1 (MQ=255)

     cTGTTTTTTTATTTCTAGTGGTGTTGTTGCTTACTTTTTGTGTTTCTATAAAGAGGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGATGACGCATTTATGCCGAGAAAATTTAt                                                                                                                                    <  2:135549/140‑1 (MQ=255)

     cTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAt                                                                                                                                    <  2:167751/140‑1 (MQ=255)

         ttttttATTCTGATTGGTGTTGTTGATTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGTAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGAt                                                                                                                                <  2:251935/140‑1 (MQ=255)

          tttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATg                                                                                                                               <  1:49432/140‑1 (MQ=255)

           ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGCTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTTATGt                                                                                                                              >  1:228874/1‑140 (MQ=255)

             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATTATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGttt                                                                                                                            >  2:243255/1‑139 (MQ=255)

             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                            >  1:220831/1‑140 (MQ=255)

               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  1:122934/140‑1 (MQ=255)

                ttCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                         <  2:121336/140‑1 (MQ=255)

                  ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                       >  1:79476/1‑140 (MQ=255)

                        ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                 <  1:171817/140‑1 (MQ=255)

                        ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATCAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                 <  2:17154/140‑1 (MQ=255)

                          tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAACTAGACGACGCATTTATGCAGAGCAAATTTATTGATGTTGAGAAGAACACTTa                                                                                                               >  1:17820/1‑140 (MQ=255)

                            ttgttgGTTACTTTTTGTGTTTCTATAAAGATGATGCATTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                             <  2:181775/140‑1 (MQ=255)

                             tgtttCTGACTTTTTGTTTTTCTATAAAGATGATGCTTATGACGAGATGGAGGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                            <  2:261815/140‑1 (MQ=255)

                              gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTa                                                                                                           >  1:203092/1‑140 (MQ=255)

                               ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTaa                                                                                                          >  2:239298/1‑140 (MQ=255)

                                 gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAc                                                                                                        >  1:152960/1‑140 (MQ=255)

                                   ttACTTTTAGTTTTTATATAAAGATAATGGTTTTGAAGAGATGGAAGAACAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                      <  2:194788/140‑1 (MQ=37)

                                     aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                    >  2:88096/1‑140 (MQ=255)

                                      tgttttGTTTTTCTATAAAGATGAGGCTTTTGAAGAGATGTAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTAAACTTGCa                                                                                                   <  2:175284/138‑1 (MQ=37)

                                        ttttGTTTTTTTATAAATATAATGCTTTAGACGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                 <  1:106085/140‑1 (MQ=37)

                                        ttttGTTTTTATATAAAGATGATGATTTTGACGAGATGGAATAAAAATATAATTATCATGAAGATAATAAAAAATAGAAGATGGATTTATTCCGCACAAATTTATTGATGTTAAAAAACAAACTTAACTAAATTTGAAGa                                                                                                 >  2:73744/1‑140 (MQ=255)

                                        tttaGTTTTTGTATTAAGATGATTCTTTTGACGAGATGGAAGAAAAATATTATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                 <  2:184305/140‑1 (MQ=37)

                                         tttGTGTGTCTATATAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                <  2:212904/140‑1 (MQ=255)

                                           tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATACTAAAATATATACGAAGAATTTAAGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                              >  2:119092/1‑140 (MQ=37)

                                           tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                              >  1:217133/1‑140 (MQ=255)

                                            gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                             >  2:71689/1‑140 (MQ=255)

                                              ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCCGAcattcg                                                                                           <  1:182862/140‑6 (MQ=255)

                                                ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                         >  1:125473/1‑140 (MQ=255)

                                                  cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                       <  2:39742/140‑1 (MQ=255)

                                                   tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                      >  1:53049/1‑140 (MQ=255)

                                                   tataAAGATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGATAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                      <  2:145826/140‑1 (MQ=255)

                                                     taAAGATAATGCTATTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                    <  1:168837/140‑1 (MQ=255)

                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                   <  2:100578/140‑1 (MQ=255)

                                                       aaGATGATGCTTTGGACGAGATGGAAGAACAGTCTGATTATTATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                  <  1:111710/140‑1 (MQ=21)

                                                           tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                              <  1:259537/140‑1 (MQ=255)

                                                           agatgCATATGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                              <  1:28468/139‑1 (MQ=255)

                                                            gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                             <  1:26171/140‑1 (MQ=255)

                                                            gatgCATTTGATTATATGGAAGAAAAATATGATTATTATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                             <  2:217588/140‑1 (MQ=21)

                                                             atgCTTTTGACGAGATGGAAGAAAAATATGATTATTATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                            <  1:150193/140‑1 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                         >  1:244788/1‑140 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGAAGACGAATGTCGGCATAGCGTGAGCTa                                                                         >  2:129602/1‑140 (MQ=255)

                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                       >  2:84509/1‑140 (MQ=255)

                                                                   gagACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                      <  2:124881/138‑1 (MQ=255)

                                                                    tGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                                                     <  1:94907/140‑1 (MQ=255)

                                                                    tGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                                                     >  1:208048/1‑140 (MQ=255)

                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                    >  1:197136/1‑140 (MQ=255)

                                                                     gACGAGAAGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                    <  1:224261/140‑1 (MQ=255)

                                                                              gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATATCGTGAGCTATTAAGACGACCAtg                                                           >  2:248750/1‑139 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGCGCTATTGAGCCGACCATTCGa                                                        >  1:241032/1‑140 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                        <  1:238598/140‑1 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACACATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTACTCAGCCGACCCTTcca                                                        >  2:215472/1‑138 (MQ=18)

                                                                                  aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                       <  2:59987/140‑1 (MQ=255)

                                                                                  aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                       >  1:143953/1‑140 (MQ=255)

                                                                                  aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                       <  1:70357/140‑1 (MQ=255)

                                                                                  aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                       <  1:173798/140‑1 (MQ=255)

                                                                                   aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACa                                                      <  2:109107/140‑1 (MQ=255)

                                                                                      atatGATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                   <  2:206256/140‑1 (MQ=255)

                                                                                       tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                  <  2:113206/140‑1 (MQ=255)

                                                                                       tatGATTACCATGAAGAGAATAAAAAACAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                  <  1:65614/140‑1 (MQ=255)

                                                                                        aggATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                 <  1:86588/138‑1 (MQ=255)

                                                                                         ttaTTATAATGAAGATAATAAAAAATAGACGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                <  1:83806/138‑1 (MQ=255)

                                                                                         tGATTATCATGAAGATAATAAAAAATAGATGACGTATTTATGTCGAGTAAATTTATTGATGTTGAGAAGACCCCTTAATTAAACTTGCAGACGAATGTCGGCATAGCGTGAGTTATTAAGGCGACCATTCGACAAGtttt                                                <  2:95122/140‑1 (MQ=17)

                                                                                         tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                <  1:248944/140‑1 (MQ=255)

                                                                                         agagtattatGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGTCGACCATTCGACAAGtttt                                                <  2:19064/136‑1 (MQ=255)

                                                                                           aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAATCCGACCATTCGACACGTTTTgg                                              >  2:5484/1‑140 (MQ=255)

                                                                                              aTCATGAAGATAATAAAAAATAGACGACGTATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGGTGAAGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                           <  2:198986/140‑1 (MQ=255)

                                                                                                 agaaaGAGAAGAAAAAAGAGACGACGCATTGATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                        <  1:44766/137‑1 (MQ=14)

                                                                                                 aTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                        <  1:75257/140‑1 (MQ=255)

                                                                                                  tGAATATAATAAAAAATAGACGAAGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGtt                                       <  1:33538/140‑1 (MQ=255)

                                                                                                       ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                  >  1:19297/1‑140 (MQ=255)

                                                                                                        taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGGTTTGGGATTGTTAAGGGt                                 >  2:142132/1‑140 (MQ=255)

                                                                                                        taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAACCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                 >  2:67318/1‑140 (MQ=255)

                                                                                                           taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                              <  1:25453/140‑1 (MQ=255)

                                                                                                           taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                              <  1:232021/140‑1 (MQ=255)

                                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAGCTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                             >  2:44195/1‑140 (MQ=255)

                                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                             >  1:215803/1‑140 (MQ=255)

                                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                             >  1:188556/1‑140 (MQ=255)

                                                                                                               aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATATCGACATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAga                          >  2:3086/1‑139 (MQ=255)

                                                                                                               aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                          >  1:37868/1‑140 (MQ=255)

                                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATCATCAGAGCAAGTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                       >  1:60737/1‑140 (MQ=11)

                                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                       <  1:130649/140‑1 (MQ=37)

                                                                                                                   aGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                      >  2:62026/1‑140 (MQ=37)

                                                                                                                     acgatgCATTTATGACTAGAAAATTTATTTATGTGGAGAAGAACCAATCACGAAAGTTTCAGATGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                    <  2:226376/140‑1 (MQ=11)

                                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                    <  2:151206/140‑1 (MQ=34)

                                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                    <  1:136543/140‑1 (MQ=34)

                                                                                                                      ttacgCATTTATGCTGAGAAAATTTATTGATGTTGTGAATAACTCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCTACCATTTGACAAGTTTTGGGATTGTTAAGGGTTCTGAGGCTCAACg                   <  2:20808/138‑1 (MQ=11)

                                                                                                                            aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa             <  2:165428/140‑1 (MQ=32)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa            <  2:155397/140‑1 (MQ=32)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTAAAAAGAACCTTTAATTGAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa            >  1:113893/1‑140 (MQ=11)

                                                                                                                                aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc         <  1:161596/140‑1 (MQ=32)

                                                                                                                                      agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGTCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg   <  2:48402/140‑1 (MQ=14)

                                                                                                                                      agaAAATTTATTGATGATGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGACTGTTAAGCGTACCGAGCCCCAACGTCCATAAAGCAACTgc   >  2:7996/1‑139 (MQ=11)

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA  >  NC_012417/1807‑2081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.