BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2057387	137 (0.750)	7 (0.040)	4/232	NT	5.2%	intergenic (+144/+148)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2057403	132 (0.790)	7 (0.040)	4/232	NT	5.2%	intergenic (+160/+132)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein

Only 100 of 168 total aligned reads displayed.

AGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGA  >  USA300TCH1516_ALE/2057263‑2057542

 gTAAACTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Tt                                                                                                                                            <  1:1312990‑M2/141‑2 (MQ=255)

   aaaCTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgc                                                                                                                                          >  2:1518586‑M2/1‑138 (MQ=255)

    aaCTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgct                                                                                                                                         <  4:520106‑M2/141‑5 (MQ=255)

    aaCTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgct                                                                                                                                         >  2:618183‑M2/1‑137 (MQ=255)

     aCTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgctg                                                                                                                                        <  1:215540‑M2/141‑6 (MQ=255)

         ttAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgctggggg                                                                                                                                    >  1:273317‑M2/1‑132 (MQ=255)

          tAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑Ttgctgggggt                                                                                                                                   >  1:967656‑M2/1‑131 (MQ=255)

            aTCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGttt                                                                                                                                 >  1:1172720/1‑141 (MQ=255)

            aTCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGttt                                                                                                                                 <  2:1031250/141‑1 (MQ=255)

            aTCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGttt                                                                                                                                 <  2:1509096/141‑1 (MQ=255)

             tCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTtc                                                                                                                                >  1:1127812/1‑141 (MQ=255)

              cTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTtct                                                                                                                               <  1:728027/141‑1 (MQ=255)

                 attaAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCAt                                                                                                                            >  2:1290630/1‑141 (MQ=255)

                  ttaAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATa                                                                                                                           >  2:213916/1‑141 (MQ=255)

                     aaGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTTTTTTAGAAAAAGCGACAAGAGAGATAATCTTAGAATAATTGGTAAAATATTAAGAACCCCCGGCATATGCTTTATATAGC‑TGGCTGGGGGTTTCTCATACaa                                                                                                                        >  3:530596/1‑141 (MQ=255)

                     aaGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCA‑A‑GCTATATAAAGCATatgctgggggttcttaata                                                                                                                          >  1:955453‑M2/1‑119 (MQ=255)

                     aaGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCA‑A‑GCTATATAAAGCATatgctgggggttcttaata                                                                                                                          <  2:955453‑M2/138‑20 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAAGAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  4:11802/1‑141 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  2:1360698/1‑141 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  2:1432944/1‑141 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  1:807961/1‑141 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  1:741122/1‑141 (MQ=255)

                      aGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAat                                                                                                                       >  1:471326/1‑141 (MQ=255)

                       ggTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAata                                                                                                                      <  2:866550/141‑1 (MQ=255)

                       ggTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATACAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAata                                                                                                                      >  1:1384249/1‑141 (MQ=255)

                          ctctAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATgg                                                                                                                   >  2:1449908/1‑141 (MQ=255)

                            ctAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCCCATACAATATGGAt                                                                                                                 >  2:1603268/1‑141 (MQ=255)

                             gaGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATc                                                                                                                <  2:475911/140‑1 (MQ=255)

                              aGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCg                                                                                                               >  1:187282/1‑141 (MQ=255)

                               ggAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGa                                                                                                              <  1:1322066/141‑1 (MQ=255)

                                gaagaaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAg                                                                                                             <  1:1441388/141‑1 (MQ=255)

                                 aagaaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGc                                                                                                            <  2:117053/141‑1 (MQ=255)

                                  agaaAAAATTTCATGCGATGAGATTGTTTTAGAAGAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                                           >  2:105919/1‑141 (MQ=255)

                                  agaaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                                           >  2:929218/1‑141 (MQ=255)

                                  agaaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                                           >  2:105912/1‑141 (MQ=255)

                                        aaTTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                                                     <  1:40849/141‑1 (MQ=255)

                                             cATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCATTATATAGC‑TTGCTGGGGGTTTCGCAGACAATATGGATCGAGCATCTTGCATGta                                                                                                >  3:312132/1‑141 (MQ=255)

                                               tGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTTTTTTTTTTTTTACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGtata                                                                                              >  2:884553/1‑141 (MQ=255)

                                                gCGATGGGATTGTTTGAGAAAAAGCGACGATATATATAATCTAACCATAATTTGTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                                                             <  2:1553010/141‑1 (MQ=255)

                                                gCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                                                             <  3:626764/141‑1 (MQ=255)

                                                 cGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaaa                                                                                            >  2:648547/1‑141 (MQ=255)

                                                    tGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACaa                                                                                         <  1:1426485/141‑1 (MQ=255)

                                                      agaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGtat                                                                                               <  1:1142787/133‑1 (MQ=255)

                                                      agaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCA‑A‑GCTATATAAAGCATatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgc                                                                                      >  3:367651‑M2/1‑86 (MQ=255)

                                                       gaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATa                                                                                      >  2:234877/1‑141 (MQ=255)

                                                         ttGTTTTAGAAAAGGCGACGCGATATATTATCTAACAGTAATTGTTAAAATATTCAGAACGCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTGCTCATACCATATGGATCGAGCATCTTGCATGTATAAACAAATAgg                                                                                    <  2:1231788/141‑1 (MQ=255)

                                                         ttGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAgg                                                                                    <  1:1290630/141‑1 (MQ=255)

                                                         ttGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAga                                                                                    <  3:27420/141‑2 (MQ=255)

                                                          tGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGc                                                                                   <  3:130631/141‑1 (MQ=255)

                                                               tAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTc                                                                              <  3:300072/141‑1 (MQ=255)

                                                                  aaaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCaaa                                                                           <  3:465567/141‑1 (MQ=255)

                                                                   aaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAg                                                                          <  2:301171/141‑1 (MQ=255)

                                                                   aaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAg                                                                          >  1:363185/1‑141 (MQ=255)

                                                                    aaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATCCAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGt                                                                         <  4:278081/141‑1 (MQ=255)

                                                                           cgaTATATATCATCTAACAAAAATTATTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGATTCTCATACAATATGGATCGAGCATATTGCATGTATCAAAAAATAGGCTATCAAAAGTaaacaaa                                                                  >  2:756803/1‑137 (MQ=255)

                                                                           cgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTa                                                                  >  3:469356/1‑141 (MQ=255)

                                                                            gaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                                                                 <  3:211018/141‑1 (MQ=255)

                                                                            gaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                                                                 <  1:343170/141‑1 (MQ=255)

                                                                               atatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCa                                                              <  3:553460/141‑1 (MQ=255)

                                                                               atatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCa                                                              <  2:1127812/141‑1 (MQ=255)

                                                                                  tataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                                                           <  2:523892/141‑1 (MQ=255)

                                                                                  tataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                                                           >  3:593668/1‑141 (MQ=255)

                                                                                   ataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATAGGCGTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACt                                                          <  2:427596/141‑1 (MQ=255)

                                                                                      aTCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTg                                                       <  4:479316/141‑1 (MQ=255)

                                                                                       tCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCaaa                                                            >  2:44554/1‑135 (MQ=255)

                                                                                       tCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCaaa                                                            <  1:44554/135‑1 (MQ=255)

                                                                                         tAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAAt                                                    <  1:1234858/141‑1 (MQ=255)

                                                                                            cAATAATTTTTAAAATCTTAAGAACCCACAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAACATTACTCAAACTTTGAATAGc                                                 <  4:199114/141‑1 (MQ=255)

                                                                                            cAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGc                                                 >  1:319808/1‑141 (MQ=255)

                                                                                               taatTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt                                              >  2:962912/1‑141 (MQ=255)

                                                                                                aatTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCttt                                             >  3:258922/1‑141 (MQ=255)

                                                                                                  tttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc                                           <  3:523177/141‑1 (MQ=255)

                                                                                                   ttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGTCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct                                          >  3:688963/1‑141 (MQ=255)

                                                                                                     ttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctct                                        <  1:1627640/141‑1 (MQ=255)

                                                                                                      tAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTTAAACTATGAATAGCCTTTCCTCtt                                       >  1:1228496/1‑141 (MQ=255)

                                                                                                      tAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCtt                                       >  2:674659/1‑141 (MQ=255)

                                                                                                        aaaTATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCa                                     <  2:383167/141‑1 (MQ=255)

                                                                                                           tatTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt                                  <  1:641130/141‑1 (MQ=255)

                                                                                                           tatCAAGACACCCAAGAATATGCTTTCTCTACA‑CTGCTGGCGGTTTATCATACCATATGGATCGAGCATCTTGCATGTAAAAACACATAGGCTATTCAACGTAAAATTACCCAAACATTGAATAGCCTCTCCTCCACAAAt                                  <  4:530596/141‑1 (MQ=255)

                                                                                                             ttAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAg                                >  1:1585806/1‑141 (MQ=255)

                                                                                                                    cccccAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttat                         >  4:255212/1‑141 (MQ=255)

                                                                                                                    cccccAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttat                         >  4:156943/1‑141 (MQ=255)

                                                                                                                     ccccAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttatt                        <  2:1212422/141‑1 (MQ=255)

                                                                                                                       ccAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattta                      >  4:179147/1‑141 (MQ=255)

                                                                                                                             tatGCTTTATATAGC‑Ttgctgggggttcttaatattttaaaaattattgttagattctatatatcgtcgctttttctaaaacaatctcatcgcatgacattttttcttcttagagactttttataagattactagtttact                <  4:576190‑M2/141‑126 (MQ=255)

                                                                                                                             tatGCTTTATATAGC‑Ttgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaatttttttcttcctagagacctttaataagattaatagtttac                <  2:1294669‑M2/141‑126 (MQ=255)

                                                                                                                             tatGCTTTATATAGC‑Ttgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagtttact                <  1:866556‑M2/141‑126 (MQ=255)

                                                                                                                              atGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGa               >  3:194815/1‑141 (MQ=255)

                                                                                                                               tGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt              <  1:906715/141‑1 (MQ=255)

                                                                                                                               tGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt              >  4:436482/1‑141 (MQ=255)

                                                                                                                                gCTTTATATAGA‑TTGCTGGGGGATTCTCATACAATATGGATAGAGCATCTAGCATGTATAAACAAATAGGCTAATCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAAACTTAATACAAAttaaatt             >  4:598607/1‑136 (MQ=255)

                                                                                                                                   ttATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAATCTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATg          <  4:66619/141‑1 (MQ=255)

                                                                                                                                    tatataGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt         >  4:75592/1‑141 (MQ=255)

                                                                                                                                      tataGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTa       <  1:460238/141‑1 (MQ=255)

                                                                                                                                       ataGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt      <  1:84698/141‑1 (MQ=255)

                                                                                                                                       ataGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt      <  2:687851/141‑1 (MQ=255)

                                                                                                                                         aGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTg    <  4:448859/141‑1 (MQ=255)

                                                                                                                                         aGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTg    >  1:1414961/1‑141 (MQ=255)

                                                                                                                                           c‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCCTCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGCTTATGTTCTTGGa  >  4:456437/1‑141 (MQ=255)

                                                                                                                                           c‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGa  <  4:331227/141‑1 (MQ=255)

AGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGC‑TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGA  >  USA300TCH1516_ALE/2057263‑2057542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.