| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 37 (0.840) +TCTCCAGGCACTTGTGCATATTCTGAAA |
30/200 | 0.5 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
CAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTC > CP000731/6425‑6681 | tttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatatacaatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaa > 1:61644‑M2/129‑129 (MQ=255) tagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCAcc > 1:152582‑M2/123‑129 (MQ=255) agttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaaaaatccactctccaggcacttgtgcatattctgaaaATCCACCt > 2:213706‑M2/122‑129 (MQ=255) tcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatacactctccaggcacttgtgcatattctgaaaATCCACCTGTa > 2:109676‑M2/119‑129 (MQ=255) tgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaattcactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCAc < 1:197972‑M2/19‑1 (MQ=255) ataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGc < 2:182498‑M2/21‑1 (MQ=255) ataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttctgcatattctgaaaATCCACCTGTATGTGTCACGc < 2:5363‑M2/21‑1 (MQ=255) atgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctcaagacacttgtgcatattatgaaaATCCACCTGTATGTGTAACGCCaa > 2:132096‑M2/106‑129 (MQ=255) gccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaatatgaacaattctctctctttgtatttgtgtatattctgaaaATCCACCTGTATGTGTCACGCCAAcatca < 1:199685‑M2/29‑1 (MQ=255) tgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTaa < 1:135139‑M2/43‑1 (MQ=255) gtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTTACGCCAACATCATAACCAGTAACTAAt < 2:87877‑M2/44‑1 (MQ=255) tgccatatatcatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATa < 2:144965‑M2/45‑1 (MQ=255) gccatataccatagactctttaatagacatttcttggggtataggaacaatccactctacagaaacttgtgcatattctgaaaATCCACCTGTATGTGTCAAGCCAACATCATAACCAGTAACTAATAc > 1:101380‑M2/84‑129 (MQ=255) tataccatagactctttaatagacatttcttggggaataggaacaatccactctcctggctcttgtgtatattttgataTTTCTCTTTTATTTGTCACGCCAACATCATAACCAGTAACTAATACATTa < 1:64384‑M2/50‑1 (MQ=255) ataccatagactctttaatagacatttcttggggactgctaacaatcttctctccaggcacttttgcatattctgaaaATCCATCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAt < 1:222339‑M2/51‑1 (MQ=255) ataccatagactctgtaatagacatttcttgtggaataggaacaatgcccgctccaggcactcgttcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAt < 2:229310‑M2/51‑1 (MQ=255) tagtctctttaattgcaatatcttggttaataggaacaatcctctctccaggcactttttcttattttgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCctt < 1:221054‑M2/57‑1 (MQ=255) gctctgtagtagacgtttgttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttctt < 1:56823‑M2/60‑1 (MQ=255) ctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctggaaATCTACGTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTaa > 2:105290‑M2/67‑129 (MQ=255) ctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctaaaaATCCACATGTATGTGTCACGATAACATAGTAACCAGAAACTAATACATTATCGCCTTCTTTaa > 1:42849‑M2/67‑129 (MQ=255) agacatttcttggggaataggaacaatccactctccaggcacttgtacatattctaaaaATACACCTATATATGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATc > 1:90701‑M2/60‑129 (MQ=255) gacagttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCa < 2:46495‑M2/71‑1 (MQ=255) tatgtcttggcgaataggaacaagccactctccaggaacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCTAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAtt < 2:77170‑M2/73‑1 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc > 1:156229‑M2/52‑129 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCAACCTGTATGTGTCACGACAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc > 1:134710‑M2/52‑129 (MQ=255) tgtgtaataggaataatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACtt < 1:82226‑M2/80‑1 (MQ=255) tggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACtt > 2:11319‑M2/50‑129 (MQ=255) tggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACtt > 2:131552‑M2/50‑129 (MQ=255) ggggtataggaacaatccactctcaaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCATGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTg < 1:85606‑M2/81‑1 (MQ=255) aataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTAACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTc > 1:169115‑M2/45‑129 (MQ=255) aataggaacaatccaatctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAATAACTAATACATTATCGCCTTCTTTAAACTTATCATTcgaacttacttt > 2:11845‑M2/45‑124 (MQ=255) ataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTca > 2:135445‑M2/44‑129 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac > 1:129092‑M2/42‑129 (MQ=255) aacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAAt < 2:235159‑M2/91‑1 (MQ=255) aacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAAt < 1:191824‑M2/91‑1 (MQ=255) acaatcccctctccaggcatttgtgcattttctgaaaAGCCACCTGTATGTGTCACGCCAACATCATATCCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATa < 2:1405‑M2/92‑1 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCAACTTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAATTGATTCAACAATACCt > 2:174255‑M2/35‑129 (MQ=255) caggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATTTCCGATCTGGAAAACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCta < 1:109676‑M2/105‑1 (MQ=255) tgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGa < 2:17294‑M2/113‑1 (MQ=255) tgcatattctgaaaATCCCCCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAAt < 1:150448‑M2/115‑1 (MQ=255) tgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAATAACTAATACATTAAAACCTTATTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACTAGGAAt > 1:213915‑M2/15‑129 (MQ=255) attctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAg > 1:196672‑M2/10‑129 (MQ=255) attctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAg > 1:113087‑M2/10‑129 (MQ=255) ttctgataATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAgg < 2:171052‑M2/121‑1 (MQ=255) aaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAAtc < 2:129092‑M2/127‑1 (MQ=255) aATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAAtct < 1:213706‑M2/128‑1 (MQ=255) aATCCACCTGTATGTGTCACGCCAACATCATAACCACTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAACTCTATACCAGCAACCATAGCATCAtct > 2:67224‑M2/2‑129 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAAtctc > 2:46039/1‑129 (MQ=255) | CAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTC > CP000731/6425‑6681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |