BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 2334	101 (1.160)	5 (0.010)	4/266	11.4	1.0%	intergenic (+114/+54)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
*	?	NC_012417	= 1975	860 (1.040)	5 (0.010)	4/266	11.4	1.0%	intergenic (+208/+118)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 919 total aligned reads displayed.

TTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGAT  >  NC_012417/1835‑2115

ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                                              >  1:201554/1‑141 (MQ=255)

  gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAACATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                                            >  1:130566/1‑141 (MQ=255)

  gttgATTAATTTTTGTTTTTATATAAAGATGATGCTTGTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                                            <  2:46393/141‑1 (MQ=255)

   ttgGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGAGGACGCATTTATGCCGAGAAAATTTCTTGATGTTGAGAAGAACCCTTAACTaac                                                                                                                                           <  1:70818/141‑2 (MQ=255)

   ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAATAATATGATTATCATGAAGATATTAAAAAATAGACGACGCATTTCTGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                                                           >  2:13769/1‑141 (MQ=255)

        tACTTTTTGTTTTTTTATAAAGATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAGATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                                                      <  2:159707/141‑1 (MQ=255)

           ttttttttttTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                                   <  1:110846/141‑1 (MQ=255)

           tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAATATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTAAAATTGCAGa                                                                                                                                   >  2:279755/1‑141 (MQ=255)

              ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                                                >  1:62106/1‑141 (MQ=255)

              ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAATAAACTTGAAGACGa                                                                                                                                >  1:7590/1‑141 (MQ=255)

              ttGTTATTATATAAAGATGATGATTTTGAAGAGATGAAATAAGACTATGAGCATCAGAAAAATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                                                <  2:113971/141‑1 (MQ=18)

              gtGTTTTTGTATAAAGATGATGGTTTTGACGAGATTGAAGAAAAATATGGTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                                                <  2:154106/140‑1 (MQ=255)

               tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGCAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                                                               >  1:233399/1‑141 (MQ=255)

                gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATATACTACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                              >  1:45103/1‑141 (MQ=255)

                gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCAGTGAGGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                              >  1:185643/1‑141 (MQ=255)

                   tttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATCGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                                           >  2:181009/1‑141 (MQ=255)

                    ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                                          >  1:212370/1‑141 (MQ=255)

                     tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                                                         >  1:99453/1‑141 (MQ=255)

                     tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                                                         >  1:289197/1‑141 (MQ=255)

                      cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                                        >  2:205852/1‑141 (MQ=255)

                       tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTTAGAAGAACCCTTAACTAAACTTGCACACGCATGCCGGCa                                                                                                                       >  2:92560/1‑141 (MQ=255)

                         taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                                     >  1:10117/1‑141 (MQ=255)

                          aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGATAAAAACACTTGACTAAACTTCCAGACGAAGTTCGCCAttc                                                                                                                    >  2:269854/1‑139 (MQ=255)

                              atggtgTTTTTGACGAAATCGAAGAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                                                                <  2:23568/141‑1 (MQ=21)

                              atgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGTCATAGCGTg                                                                                                                >  2:256472/1‑141 (MQ=255)

                              atgatgCTTTTGACAATATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                                                                <  1:317440/141‑1 (MQ=255)

                                gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                              >  1:206389/1‑141 (MQ=255)

                                gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                              >  1:278779/1‑141 (MQ=255)

                                gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                              <  1:250747/141‑1 (MQ=255)

                                 tgtagtttGACGAGATGGAATAAAAATATGATTATCATGAAGATAATAAAAAAGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                                             <  2:5615/136‑1 (MQ=255)

                                 atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGACGAACCCTTAACTAAAATCGCAGACGAATGTCGGCATCGCGTGAGc                                                                                                             >  2:212537/1‑141 (MQ=255)

                                  tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCCTAGCGTGAGCt                                                                                                            >  1:246911/1‑141 (MQ=255)

                                  tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                                                            >  1:158576/1‑141 (MQ=255)

                                   gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                           >  1:274277/1‑141 (MQ=255)

                                   gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                           >  1:295767/1‑141 (MQ=255)

                                   gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                           >  1:127788/1‑141 (MQ=255)

                                      tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAACATTTATTGATGTTGAGAAGAACCCTTAACTAAACTCGCAGACGAATGTCGGCATAGCGTCAGCTactc                                                                                                        >  2:4143/1‑138 (MQ=255)

                                              gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                                >  1:123455/1‑141 (MQ=255)

                                              gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATATATTCATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTTGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                                >  1:152313/1‑141 (MQ=255)

                                                     gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                                         <  1:227787/141‑1 (MQ=255)

                                                           tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                                                   <  2:194207/141‑1 (MQ=255)

                                                            atGATTAGTATGAAGATAATAAAGAATAGACGACGCAGTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                  <  2:61896/141‑1 (MQ=255)

                                                                ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTTTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                                              <  1:304066/141‑1 (MQ=255)

                                                                    cATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                                          >  1:311219/1‑141 (MQ=255)

                                                                    cATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                                          >  2:300600/1‑141 (MQ=255)

                                                                    cATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGATGAGAAGAACGCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                                          >  2:82309/1‑141 (MQ=255)

                                                                        aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                                      <  2:305449/141‑1 (MQ=255)

                                                                        aaGATAATAAAAAATAGACGACGCATATATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                                      <  2:86391/141‑1 (MQ=255)

                                                                         aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                                                     >  1:183125/1‑141 (MQ=255)

                                                                          ggacataaGATATAGAGGACGCATTTCTGCCGAGAAAAGTTATGGATGTTGAGAAGAACCCTAAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCATTTGACAAGTTTTGGGATTGTTAAggg                                                                    <  2:292688/137‑1 (MQ=11)

                                                                          aataataAAAAATAGACGACGCATTTATGGCGAGAAAATTTATTGATTTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                                                    <  2:175471/140‑1 (MQ=255)

                                                                             aataaAAAATAGACGACGCATTTATGCCGAGACAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCATACGAATGTCGGCATAGCGTGAGCTATTAACCCGACCATTCGACAAGTTTTGGGATTGATACGGGTTc                                                                 >  2:284697/1‑141 (MQ=14)

                                                                              ataaAAAATGGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                                <  2:320246/141‑1 (MQ=255)

                                                                              ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGGGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                                >  2:165579/1‑141 (MQ=255)

                                                                              ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                                <  1:88923/141‑1 (MQ=255)

                                                                              ataaAAAATAAATGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                                <  1:37973/141‑1 (MQ=255)

                                                                               taaAAAATAGACTACTCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                                               <  1:322021/141‑1 (MQ=255)

                                                                               aaaaaaaGAGACGACGCATTTATGCCGTGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                                               <  2:130132/140‑1 (MQ=255)

                                                                                   aaaTAGACGACGCATTTATGTCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                                           <  2:201268/141‑1 (MQ=255)

                                                                                    aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                                          <  1:180594/141‑1 (MQ=38)

                                                                                    aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                                          <  1:134607/141‑1 (MQ=38)

                                                                                     aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                                                         <  2:25329/141‑1 (MQ=37)

                                                                                        gacgagGCATTTATGTTGAGAAAATTTATTTATGTTGAGGAGAACCCTTAGCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATGAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                                      <  2:123681/141‑1 (MQ=11)

                                                                                             cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                                 >  1:257621/1‑141 (MQ=32)

                                                                                               cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                                               >  1:222392/1‑141 (MQ=17)

                                                                                                aTTGATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCAGAACATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                                              <  1:5141/141‑1 (MQ=12)

                                                                                                  ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaat                                            >  2:73576/1‑140 (MQ=17)

                                                                                                   tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                                           <  2:188534/141‑1 (MQ=32)

                                                                                                   tATGCCGAGAAAATTTAATGTAATATAAAATAACCCTTAACTAAACTTGCAAACGAATGTCGGCATAGCGTGAGCTATTAAGCTTACAATACGACAAGTTTTGAGATTGTTAATGATTTCGAGACTAAACTACAATAAAga                                           >  2:264588/1‑140 (MQ=2)

                                                                                                      accGAGAAAATTTATTGATGTTGAGAAAAACCCGTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                                        <  2:225828/140‑1 (MQ=17)

                                                                                                        cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                                      <  1:269929/141‑1 (MQ=32)

                                                                                                        agagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCACTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                                      <  1:164157/140‑1 (MQ=17)

                                                                                                         gagaAAATTTATTGATGTTGAGACGAACCCTTAACTAACCTTGCAGACGAATGTCGGGATAGCGTCAGCTACTAAGCCGCCCATTCGGGAAGTTTTGGGATTGACAAAGAAAATATTGCTCTACGTCAATAAAGCAATTgg                                     <  2:39496/141‑1 (MQ=2)

                                                                                                         gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg                                     <  2:220443/141‑1 (MQ=32)

                                                                                                                tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGaaataaat                              >  2:105571/1‑141 (MQ=11)

                                                                                                                 ttATTGATGTTGAGAGGAACCATTAACTAAACTTGCAGACCAACTTCTCTATAGGTTGTGGTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                             <  2:145127/141‑1 (MQ=11)

                                                                                                                 ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGCGTGCACTCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                             <  2:312119/141‑1 (MQ=11)

                                                                                                                 ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGCTTGTTAAGGGTTCCGATGCTCAACGTCAATAAAGCACTTGGaataaata                             >  2:120067/1‑141 (MQ=9)

                                                                                                                 ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                             <  1:176546/141‑1 (MQ=31)

                                                                                                                 ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                             <  1:57890/141‑1 (MQ=31)

                                                                                                                 gtATTGATGTTGAGAAGAACCCTTAACTGAACTTGCAGAGGAATGTCGGCGTAGCGTGAGCTATTAAGCCGAACATTCGACAAGGTTTGGGATTGTTAAGGGTTGCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                             <  1:169845/140‑1 (MQ=11)

                                                                                                                  tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAg                            <  2:35526/141‑1 (MQ=32)

                                                                                                                  tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAg                            <  2:242250/141‑1 (MQ=17)

                                                                                                                   aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGt                           >  1:264839/1‑141 (MQ=32)

                                                                                                                      gATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAGCGTCAATAAAGCAATTGGAATAAATAGTGTc                        >  1:217851/1‑141 (MQ=17)

                                                                                                                         gTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTaa                     >  1:241199/1‑141 (MQ=38)

                                                                                                                             agaagaACCCTTAACGAAACTGGCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa                 <  1:81925/141‑1 (MQ=255)

                                                                                                                                  aaCCCTTAAGTAAACTTGCAGACGAATGTTGGCAGAGCGTGAGCTATTAAGCCGACCATTCGACGAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg            <  1:307336/141‑1 (MQ=255)

                                                                                                                                  aaCCCTTAAGTAAACTGACAGACGAATGTCGGCATAGCGTGCGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg            <  1:284999/141‑1 (MQ=255)

                                                                                                                                  aaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg            <  1:196707/141‑1 (MQ=255)

                                                                                                                                  aaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCCCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg            <  1:116925/141‑1 (MQ=255)

                                                                                                                                  aaCCATTAACTAAACTTGCACATGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg            <  2:157201/141‑1 (MQ=255)

                                                                                                                                   aCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTCTTAAGCCGACCATTCGACACGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTGAATAAAGCAATTGTAATAAATAGTATATAAAGTAACCCGt           >  1:96303/1‑141 (MQ=14)

                                                                                                                                   aCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAACGTAACCCGt           >  2:67461/1‑141 (MQ=255)

                                                                                                                                   aCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGt           <  1:191012/141‑1 (MQ=255)

                                                                                                                                    cccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTa          >  2:289514/1‑141 (MQ=255)

                                                                                                                                      atgaaCTAAACTTGCAGAAGAATGTCGGCATAGCGTGACATATTAATCCGACCATTCGCCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAtt        <  1:145342/138‑1 (MQ=17)

                                                                                                                                       ttAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAttt       <  1:14114/141‑1 (MQ=255)

                                                                                                                                       ttAACTAAACTGGCGGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAttt       <  2:250223/141‑1 (MQ=255)

                                                                                                                                         aaCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTaa     >  2:151108/1‑141 (MQ=255)

TTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGAT  >  NC_012417/1835‑2115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.