| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 868310 | 77 (0.780) | 6 (0.070) | 5/148 | NT | 8.3% | coding (458/465 nt) | smpB | SsrA‑binding protein |
| ? | USA300TCH1516_ALE | = 868335 | 61 (0.670) | intergenic (+18/+1304) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein | |||||
ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAA > 1:3450051/1‑91 CTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG > 1:2175375/1‑91 CTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG < 1:3423643/91‑1 TTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC > 1:2597287/1‑91 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC > 1:3671223/1‑91 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGCT < 1:769201/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTA < 1:3439019/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:533958/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:533929/91‑1 ATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATA < 1:1090251/91‑1 AAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGG < 1:1063166/91‑1 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT > 1:3039554/1‑91 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT > 1:2133269/1‑91 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT > 1:2133159/1‑91 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT > 1:2133031/1‑91 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA > 1:82679/1‑91 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:88791/91‑1 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |