BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 868310	77 (0.780)	6 (0.070)	5/148	NT	8.3%	coding (458/465 nt)	smpB	SsrA‑binding protein
*	?	USA300TCH1516_ALE	= 868335	61 (0.670)	6 (0.070)	5/148	NT	8.3%	intergenic (+18/+1304)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 116 total aligned reads displayed.

TGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868221‑868400

tgtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGt                                                                                           <  1:344797/91‑1 (MQ=255)

   tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                        >  1:3038393/1‑91 (MQ=255)

   tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                        <  1:180046/91‑1 (MQ=255)

    gCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatt                                                                                       >  1:1762270/1‑91 (MQ=255)

     cACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatta                                                                                      >  1:705246/1‑91 (MQ=255)

      aCGAGGTAAGAAAAAATATGATAAACGTCAAGTTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                                     <  1:3535730/91‑1 (MQ=255)

      aCGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                                     <  1:413696/91‑1 (MQ=255)

      aCGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                                     <  1:1373291/91‑1 (MQ=255)

        gAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGc                                                                                   <  1:2322372/91‑1 (MQ=255)

         aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                                  <  1:902647/91‑1 (MQ=255)

          ggTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGa                                                                                 <  1:223684/91‑1 (MQ=255)

           ggaaGAAAAAAGATGATAAGCGCCAAGCTCTGAAAGAAAAAGCAGTCAATCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  1:1894877/89‑1 (MQ=255)

           gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  1:5646/91‑1 (MQ=255)

           gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  1:5731/91‑1 (MQ=255)

             aaGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAttt                                                                              >  1:3355903/1‑91 (MQ=255)

              ccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGt                                                                           >  1:547743‑M1/71‑91 (MQ=255)

              ccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGt                                                                           >  1:547732‑M1/71‑91 (MQ=255)

              aGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTa                                                                             <  1:3680775/91‑1 (MQ=255)

                ccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGTTg                                                                         >  1:2583364‑M1/69‑91 (MQ=255)

                aaaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGt                                                                           <  1:4145069/91‑1 (MQ=255)

                 aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                          <  1:881215/91‑1 (MQ=255)

                 aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                          >  1:2819734/1‑91 (MQ=255)

                 aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                          <  1:3532387/91‑1 (MQ=255)

                  aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTg                                                                         <  1:772592/91‑1 (MQ=255)

                   aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        >  1:1104222/1‑91 (MQ=255)

                   aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        <  1:470491/91‑1 (MQ=255)

                   aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        <  1:3608802/91‑1 (MQ=255)

                    aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttattaagcaactaaatcgct                                                                       <  1:769201‑M1/91‑22 (MQ=255)

                    aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCt                                                                       >  1:2855527/1‑91 (MQ=255)

                     atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                                      <  1:533958‑M1/91‑23 (MQ=255)

                     atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCtt                                                                      >  1:309914/1‑91 (MQ=255)

                     atatGATAAACGTCAAGCTTTGAAACAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCtt                                                                      <  1:3864664/91‑1 (MQ=255)

                      tatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTa                                                                     >  1:2952718/1‑91 (MQ=255)

                       atGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaata                                                                    <  1:1090251‑M1/91‑25 (MQ=255)

                        tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   >  1:1099634/1‑91 (MQ=255)

                        tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   >  1:1099456/1‑91 (MQ=255)

                        tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   <  1:1683918/91‑1 (MQ=255)

                        ataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   >  1:722631‑M1/61‑91 (MQ=255)

                        ataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   >  1:1785344‑M1/61‑91 (MQ=255)

                          aaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCg                                                                 >  1:1226686‑M1/59‑91 (MQ=255)

                           tAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgg                                                                >  1:82679‑M2/1‑88 (MQ=255)

                            atcaaaccaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCggg                                                               >  1:2079890‑M1/57‑91 (MQ=255)

                            atcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCggg                                                               >  1:2531838‑M1/57‑91 (MQ=255)

                            aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataacggg                                                               <  1:1063166‑M1/91‑30 (MQ=255)

                            aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                               >  1:2133159‑M2/1‑87 (MQ=255)

                            aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                               >  1:2133269‑M2/1‑87 (MQ=255)

                            aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                               >  1:3039554‑M2/1‑87 (MQ=255)

                                aacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtat                                                           >  1:2155118‑M1/53‑91 (MQ=255)

                                 tCAAGCTTTGAAAGAAAAAGCAGTCGAACGAGATGTTGCGCGCGATATGAAAGGCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtata                                                          <  1:3857698/91‑1 (MQ=255)

                                  cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         <  1:1278972/91‑1 (MQ=255)

                                   aaGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATCtt                                                        >  1:814782/1‑91 (MQ=255)

                                    aGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATAttt                                                       <  1:708234/91‑1 (MQ=255)

                                     gCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTg                                                      <  1:3609799/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:2975062/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:484066/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:632041/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:3819785/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:3819190/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:2272835/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:2821792/91‑1 (MQ=255)

                                      cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     <  1:890556/91‑1 (MQ=255)

                                              gaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTta                                             >  1:1030413/1‑91 (MQ=255)

                                                aaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATCGTtata                                           <  1:3221901/91‑1 (MQ=255)

                                                aaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtata                                           <  1:863289/91‑1 (MQ=255)

                                                 aaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTatat                                          >  1:1772932/1‑91 (MQ=255)

                                                     cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                                      >  1:1750120/1‑91 (MQ=255)

                                                     cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                                      >  1:201597/1‑91 (MQ=255)

                                                      aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     >  1:2557696/1‑91 (MQ=255)

                                                      aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     <  1:144072/91‑1 (MQ=255)

                                                      aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     <  1:144056/91‑1 (MQ=255)

                                                      aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     <  1:2851926/91‑1 (MQ=255)

                                                       gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtt                                    >  1:1226359/1‑91 (MQ=255)

                                                         cAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtttt                                  <  1:2729596/91‑1 (MQ=255)

                                                           aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                                >  1:966826/1‑91 (MQ=255)

                                                           aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                                >  1:3354516/1‑91 (MQ=255)

                                                           aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                                >  1:3354212/1‑91 (MQ=255)

                                                             cGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTaa                              >  1:640318/1‑91 (MQ=255)

                                                               agaTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAAt                            >  1:4094969/1‑91 (MQ=255)

                                                                   gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTACTTTTGTAATTTACa                        <  1:2830205/91‑1 (MQ=255)

                                                                      gcgcgcGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaaa                     <  1:1979475/91‑1 (MQ=255)

                                                                         cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa                  <  1:1869323/91‑1 (MQ=255)

                                                                         cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa                  <  1:3804800/91‑1 (MQ=255)

                                                                         cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa                  <  1:2559127/91‑1 (MQ=255)

                                                                             atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTATAAAAGTATGAt              <  1:316404/91‑1 (MQ=255)

                                                                             atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt              >  1:46398/1‑91 (MQ=255)

                                                                             atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTCTGTAAATTACAAAAGTATGAt              >  1:908205/1‑91 (MQ=255)

                                                                              tatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtt             <  1:223021/91‑1 (MQ=255)

                                                                                 gAAAGCCCGTTAGTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgt          >  1:3182547/1‑91 (MQ=255)

                                                                                      cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     >  1:2133031‑M1/1‑4 (MQ=255)

                                                                                      cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     >  1:3039554‑M1/1‑4 (MQ=255)

                                                                                      cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     >  1:2133269‑M1/1‑4 (MQ=255)

                                                                                      cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     >  1:2133159‑M1/1‑4 (MQ=255)

                                                                                      cccGTTATTAAGCGATTTAGTTGCTTAATcgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     <  1:1063166‑M2/91‑63 (MQ=255)

                                                                                       ccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttta    >  1:82679‑M1/1‑3 (MQ=255)

                                                                                       CCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAtt    >  1:685682‑M1/1‑91 (MQ=255)

                                                                                        CGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAttt   >  1:891507‑M1/1‑91 (MQ=255)

                                                                                        CGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAttt   <  1:3024731‑M1/91‑1 (MQ=255)

                                                                                         gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:88791‑M1/91‑91 (MQ=255)

                                                                                         GTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTa  >  1:345512‑M1/1‑91 (MQ=255)

                                                                                         GTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTa  >  1:935093‑M1/1‑91 (MQ=255)

TGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868221‑868400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.